Wall clock time and date at job start Tue Mar 31 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35314 * 126.13167 * 2 1 4 4 C 1.39864 * 107.92635 * 179.97438 * 3 2 1 5 5 N 1.30841 * 108.20123 * 359.73755 * 4 3 2 6 6 N 1.34956 * 126.12642 * 179.97438 * 2 1 3 7 7 C 1.46499 * 126.03479 * 359.97438 * 6 2 1 8 8 C 1.50701 * 109.46992 * 90.00132 * 7 6 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.85056 * 25.34023 * 11 10 8 13 13 C 1.53784 * 113.61126 * 156.53132 * 11 10 8 14 14 C 1.53786 * 87.07801 * 139.98073 * 13 11 10 15 15 H 1.09004 * 113.61038 * 89.20549 * 14 13 11 16 16 N 1.46498 * 113.61439 * 220.01531 * 14 13 11 17 17 C 1.36928 * 120.00483 * 205.00156 * 16 14 13 18 18 H 1.08007 * 119.99727 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00568 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99457 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00285 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47593 * 89.99754 * 21 19 17 23 23 H 1.48504 * 109.46982 * 210.00021 * 21 19 17 24 24 H 1.48505 * 109.47095 * 329.99487 * 21 19 17 25 25 C 1.53787 * 113.61653 * 254.13757 * 11 10 8 26 26 H 1.08997 * 109.46910 * 270.02631 * 1 2 3 27 27 H 1.08994 * 109.46984 * 30.02583 * 1 2 3 28 28 H 1.09001 * 109.47418 * 150.02539 * 1 2 3 29 29 H 1.08006 * 126.03636 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.90397 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47391 * 330.00123 * 7 6 2 32 32 H 1.09001 * 109.46813 * 210.00179 * 7 6 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 34 34 H 1.08998 * 113.61799 * 254.52676 * 13 11 10 35 35 H 1.09002 * 113.61654 * 25.43637 * 13 11 10 36 36 H 0.97010 * 120.00043 * 25.00473 * 16 14 13 37 37 H 0.97011 * 120.00003 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.61076 * 334.57310 * 25 11 10 39 39 H 1.08995 * 113.61025 * 105.47189 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6334 -0.6525 0.0066 6 7 2.3026 -1.0901 0.0005 7 6 1.8539 -2.4846 0.0016 8 6 1.6995 -2.9638 -1.4188 9 8 1.9411 -2.2143 -2.3412 10 7 1.2940 -4.2255 -1.6640 11 6 1.1445 -4.6915 -3.0449 12 1 1.7725 -4.1430 -3.7470 13 6 1.2430 -6.2189 -3.1936 14 6 0.0981 -6.1144 -4.2150 15 1 0.4390 -5.9564 -5.2383 16 7 -0.8877 -7.1923 -4.1039 17 6 -1.6410 -7.5460 -5.1913 18 1 -1.5081 -7.0306 -6.1311 19 6 -2.5756 -8.5671 -5.0859 20 7 -2.7371 -9.1956 -3.9408 21 14 -3.6027 -9.0501 -6.5695 22 1 -2.8987 -10.1099 -7.3352 23 1 -4.9206 -9.5609 -6.1140 24 1 -3.8055 -7.8632 -7.4387 25 6 -0.3199 -4.8182 -3.4972 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.9741 2.1211 -0.0004 30 1 4.5085 1.2891 0.0004 31 1 0.8955 -2.5575 0.5159 32 1 2.5900 -3.1027 0.5157 33 1 1.1011 -4.8250 -0.9263 34 1 2.1849 -6.5557 -3.6265 35 1 0.9728 -6.7641 -2.2892 36 1 -1.0069 -7.6555 -3.2600 37 1 -3.3899 -9.9094 -3.8672 38 1 -1.0181 -4.9796 -2.6759 39 1 -0.6377 -4.0258 -4.1747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022790373.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:05 Heat of formation + Delta-G solvation = 75.434417 kcal Electronic energy + Delta-G solvation = -20855.962049 eV Core-core repulsion = 17608.481629 eV Total energy + Delta-G solvation = -3247.480420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -41.43748 -39.84368 -38.00845 -34.19153 -33.66153 -32.76890 -32.16112 -29.97779 -27.72496 -27.09713 -25.20578 -24.50034 -22.57419 -21.30560 -20.75879 -19.98339 -19.24132 -17.50460 -17.19702 -16.93405 -16.04099 -15.57273 -15.08417 -14.66394 -14.47643 -14.19343 -13.95736 -13.75237 -13.16103 -13.09493 -12.98007 -12.88597 -12.59901 -12.23377 -12.07664 -11.99422 -11.32164 -10.97523 -10.74357 -10.72897 -10.56002 -10.42000 -10.17659 -10.04275 -9.69911 -9.29850 -8.97920 -8.87277 -8.61763 -7.04279 -5.85205 -3.14231 1.66361 2.20710 2.43839 2.74787 3.18982 3.39350 3.45149 3.46398 4.28633 4.44162 4.51001 4.55994 4.72213 4.84326 4.95856 5.00196 5.15429 5.22062 5.29673 5.41459 5.51296 5.56509 5.61409 5.79667 5.86100 6.00594 6.04289 6.18377 6.23151 6.38254 6.52188 6.53694 6.65243 6.79960 6.98589 7.44900 7.58903 7.64415 8.09868 8.33245 9.44792 10.00671 10.35294 11.37156 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.002850 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.562137 B = 9823.498612 C =10036.974007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.095 3.905 3 C -0.277 4.277 4 C 0.048 3.952 5 N -0.291 5.291 6 N -0.355 5.355 7 C 0.112 3.888 8 C 0.493 3.507 9 O -0.524 6.524 10 N -0.710 5.710 11 C 0.118 3.882 12 H 0.108 0.892 13 C -0.158 4.158 14 C 0.169 3.831 15 H 0.080 0.920 16 N -0.710 5.710 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.176 4.176 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.182 0.818 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 16.249 11.806 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.031 4.031 3 C -0.306 4.306 4 C -0.138 4.138 5 N -0.111 5.111 6 N -0.138 5.138 7 C -0.015 4.015 8 C 0.277 3.723 9 O -0.400 6.400 10 N -0.361 5.361 11 C 0.014 3.986 12 H 0.126 0.874 13 C -0.198 4.198 14 C 0.056 3.944 15 H 0.098 0.902 16 N -0.348 5.348 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.218 4.218 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.164 0.836 30 H 0.199 0.801 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.306 15.536 10.951 21.163 hybrid contribution -1.215 -0.043 -0.132 1.223 sum 8.092 15.493 10.819 20.556 Atomic orbital electron populations 1.20476 0.87409 1.04319 1.03118 1.21085 0.94665 0.87227 1.00170 1.21186 0.92354 0.98815 1.18247 1.23807 0.98133 0.92153 0.99705 1.77364 0.96196 1.13212 1.24293 1.47922 1.04120 1.04411 1.57344 1.21482 1.03297 0.80404 0.96270 1.20763 0.77637 0.82811 0.91102 1.90764 1.49069 1.54575 1.45549 1.46005 1.67967 1.12481 1.09665 1.22536 0.98910 0.95235 0.81936 0.87409 1.23867 1.00846 0.93500 1.01575 1.21370 0.88986 0.88186 0.95830 0.90198 1.42349 1.41708 1.38314 1.12380 1.19316 1.13540 1.13813 0.90965 0.90975 1.24769 1.00036 0.98886 0.97142 1.69656 1.38193 1.26411 1.23840 0.86172 0.79649 0.78349 0.81926 1.21620 1.21730 1.20662 1.24365 0.94724 1.01429 1.01291 0.90108 0.89428 0.91114 0.83616 0.80073 0.86104 0.85785 0.76471 0.91394 0.89853 0.78085 0.93416 0.90159 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.90 36.00 0.36 -0.40 16 2 C 0.10 1.07 6.93 -82.26 -0.57 0.50 16 3 C -0.28 -2.97 10.72 -40.02 -0.43 -3.40 16 4 C 0.05 0.55 12.03 -17.37 -0.21 0.34 16 5 N -0.29 -4.02 12.58 30.62 0.39 -3.63 16 6 N -0.36 -4.39 3.10 -58.31 -0.18 -4.58 16 7 C 0.11 1.06 6.55 -5.19 -0.03 1.03 16 8 C 0.49 6.40 7.90 -10.98 -0.09 6.31 16 9 O -0.52 -9.33 16.05 5.56 0.09 -9.24 16 10 N -0.71 -8.29 5.36 -53.01 -0.28 -8.58 16 11 C 0.12 1.71 4.21 -67.11 -0.28 1.42 16 12 H 0.11 1.69 7.50 -51.93 -0.39 1.30 16 13 C -0.16 -2.38 7.58 -25.91 -0.20 -2.58 16 14 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 15 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 16 N -0.71 -17.10 5.40 -52.55 -0.28 -17.39 16 17 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.18 -2.96 7.69 -25.83 -0.20 -3.15 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 29 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.12 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 3.49 8.71 -40.82 -0.36 3.14 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 36 H 0.39 9.74 7.92 -40.82 -0.32 9.42 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -35.18 336.69 -7.33 -42.51 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.64 Total: 9.88 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.20 Total: -4.27 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.36 Total: -60.92 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.18 -7.33 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022790373.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.949 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds