Wall clock time and date at job start Tue Mar 31 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35314 * 126.13167 * 2 1 4 4 C 1.39864 * 107.92635 * 179.97438 * 3 2 1 5 5 N 1.30841 * 108.20123 * 359.73755 * 4 3 2 6 6 N 1.34956 * 126.12642 * 179.97438 * 2 1 3 7 7 C 1.46499 * 126.03479 * 359.97438 * 6 2 1 8 8 C 1.50701 * 109.46992 * 90.00132 * 7 6 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.85056 * 25.34023 * 11 10 8 13 13 C 1.53784 * 113.61126 * 156.53132 * 11 10 8 14 14 C 1.53786 * 87.07801 * 139.98073 * 13 11 10 15 15 H 1.09004 * 113.61038 * 89.20549 * 14 13 11 16 16 N 1.46498 * 113.61439 * 220.01531 * 14 13 11 17 17 C 1.36928 * 120.00483 * 205.00156 * 16 14 13 18 18 H 1.08007 * 119.99727 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00568 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99457 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00285 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47593 * 89.99754 * 21 19 17 23 23 H 1.48504 * 109.46982 * 210.00021 * 21 19 17 24 24 H 1.48505 * 109.47095 * 329.99487 * 21 19 17 25 25 C 1.53787 * 113.61653 * 254.13757 * 11 10 8 26 26 H 1.08997 * 109.46910 * 270.02631 * 1 2 3 27 27 H 1.08994 * 109.46984 * 30.02583 * 1 2 3 28 28 H 1.09001 * 109.47418 * 150.02539 * 1 2 3 29 29 H 1.08006 * 126.03636 * 359.97438 * 3 2 1 30 30 H 1.08003 * 125.90397 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47391 * 330.00123 * 7 6 2 32 32 H 1.09001 * 109.46813 * 210.00179 * 7 6 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 34 34 H 1.08998 * 113.61799 * 254.52676 * 13 11 10 35 35 H 1.09002 * 113.61654 * 25.43637 * 13 11 10 36 36 H 0.97010 * 120.00043 * 25.00473 * 16 14 13 37 37 H 0.97011 * 120.00003 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.61076 * 334.57310 * 25 11 10 39 39 H 1.08995 * 113.61025 * 105.47189 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6334 -0.6525 0.0066 6 7 2.3026 -1.0901 0.0005 7 6 1.8539 -2.4846 0.0016 8 6 1.6995 -2.9638 -1.4188 9 8 1.9411 -2.2143 -2.3412 10 7 1.2940 -4.2255 -1.6640 11 6 1.1445 -4.6915 -3.0449 12 1 1.7725 -4.1430 -3.7470 13 6 1.2430 -6.2189 -3.1936 14 6 0.0981 -6.1144 -4.2150 15 1 0.4390 -5.9564 -5.2383 16 7 -0.8877 -7.1923 -4.1039 17 6 -1.6410 -7.5460 -5.1913 18 1 -1.5081 -7.0306 -6.1311 19 6 -2.5756 -8.5671 -5.0859 20 7 -2.7371 -9.1956 -3.9408 21 14 -3.6027 -9.0501 -6.5695 22 1 -2.8987 -10.1099 -7.3352 23 1 -4.9206 -9.5609 -6.1140 24 1 -3.8055 -7.8632 -7.4387 25 6 -0.3199 -4.8182 -3.4972 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.9741 2.1211 -0.0004 30 1 4.5085 1.2891 0.0004 31 1 0.8955 -2.5575 0.5159 32 1 2.5900 -3.1027 0.5157 33 1 1.1011 -4.8250 -0.9263 34 1 2.1849 -6.5557 -3.6265 35 1 0.9728 -6.7641 -2.2892 36 1 -1.0069 -7.6555 -3.2600 37 1 -3.3899 -9.9094 -3.8672 38 1 -1.0181 -4.9796 -2.6759 39 1 -0.6377 -4.0258 -4.1747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022790373.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:05 Heat of formation + Delta-G solvation = 49.995162 kcal Electronic energy + Delta-G solvation = -20857.065178 eV Core-core repulsion = 17608.481629 eV Total energy + Delta-G solvation = -3248.583549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25958 -40.98880 -39.32590 -35.81759 -34.63203 -34.12539 -32.93480 -31.82282 -28.63254 -27.81624 -26.57463 -26.27652 -24.00831 -22.23050 -21.78446 -21.08347 -20.41041 -19.18445 -18.40438 -17.93097 -17.25506 -16.55909 -16.32179 -16.14603 -15.82674 -15.17369 -15.00535 -14.93090 -14.63740 -14.37268 -13.80634 -13.74173 -13.55871 -13.32586 -13.18965 -13.12188 -12.90795 -12.82942 -12.25283 -12.20868 -12.09556 -11.79191 -11.57271 -11.54831 -11.22752 -10.88027 -10.18240 -10.07236 -9.43491 -8.99789 -7.96467 -5.24256 0.83268 1.43781 1.45713 1.48158 1.48662 1.57076 1.94670 2.22441 2.56428 3.35180 3.55240 3.64398 3.68638 3.77825 3.82443 3.94573 4.09618 4.17094 4.24344 4.28725 4.34048 4.68470 4.70010 4.80426 4.84637 4.87055 4.88584 5.01866 5.10248 5.13233 5.26564 5.32518 5.49454 5.63119 5.74801 6.05454 6.26259 6.48970 6.76204 7.13434 7.33178 8.08235 8.32098 9.26511 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.002850 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.562137 B = 9823.498612 C =10036.974007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.084 3.916 3 C -0.290 4.290 4 C 0.041 3.959 5 N -0.335 5.335 6 N -0.368 5.368 7 C 0.112 3.888 8 C 0.495 3.505 9 O -0.577 6.577 10 N -0.697 5.697 11 C 0.137 3.863 12 H 0.098 0.902 13 C -0.138 4.138 14 C 0.149 3.851 15 H 0.075 0.925 16 N -0.722 5.722 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.272 1.272 25 C -0.167 4.167 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.167 0.833 30 H 0.207 0.793 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.419 0.581 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.637 17.089 12.693 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 C -0.319 4.319 4 C -0.144 4.144 5 N -0.155 5.155 6 N -0.151 5.151 7 C -0.013 4.013 8 C 0.281 3.719 9 O -0.456 6.456 10 N -0.349 5.349 11 C 0.031 3.969 12 H 0.116 0.884 13 C -0.178 4.178 14 C 0.038 3.962 15 H 0.093 0.907 16 N -0.360 5.360 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.197 1.197 25 C -0.209 4.209 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.185 0.815 30 H 0.224 0.776 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.257 0.743 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.413 16.398 11.859 22.319 hybrid contribution -1.186 -0.208 -0.413 1.273 sum 8.226 16.190 11.446 21.466 Atomic orbital electron populations 1.20575 0.85310 1.04418 1.04719 1.21704 0.96136 0.87184 0.99299 1.21582 0.92160 0.99976 1.18164 1.24355 0.99550 0.91929 0.98592 1.77280 0.97625 1.14478 1.26136 1.48150 1.03854 1.05439 1.57632 1.21738 1.05894 0.79744 0.93918 1.21383 0.76144 0.82260 0.92148 1.90745 1.51375 1.55957 1.47474 1.45809 1.67334 1.12698 1.09058 1.22101 0.96699 0.94718 0.83367 0.88430 1.23670 0.99553 0.93995 1.00573 1.21685 0.89694 0.87822 0.97001 0.90713 1.42474 1.42675 1.39598 1.11262 1.19674 1.13197 1.13102 0.91796 0.90797 1.25512 1.01768 0.99580 0.99656 1.69790 1.39145 1.27188 1.25623 0.85197 0.77782 0.78086 0.79049 1.21426 1.22167 1.19688 1.24173 0.96318 0.99637 1.00754 0.87645 0.88588 0.91718 0.81530 0.77647 0.82314 0.83616 0.74346 0.90174 0.88827 0.79052 0.93953 0.90436 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.90 71.24 0.71 -0.54 16 2 C 0.08 1.73 6.93 41.40 0.29 2.02 16 3 C -0.29 -5.82 10.72 21.99 0.24 -5.58 16 4 C 0.04 0.91 12.03 85.23 1.02 1.93 16 5 N -0.33 -9.01 12.58 -57.02 -0.72 -9.73 16 6 N -0.37 -8.55 3.10 -338.40 -1.05 -9.60 16 7 C 0.11 1.86 6.55 85.63 0.56 2.42 16 8 C 0.49 12.02 7.90 87.66 0.69 12.71 16 9 O -0.58 -20.24 16.05 -3.03 -0.05 -20.29 16 10 N -0.70 -14.79 5.36 -440.02 -2.36 -17.15 16 11 C 0.14 3.75 4.21 45.52 0.19 3.94 16 12 H 0.10 2.98 7.50 -2.39 -0.02 2.96 16 13 C -0.14 -3.93 7.58 31.12 0.24 -3.70 16 14 C 0.15 5.54 4.48 45.58 0.20 5.74 16 15 H 0.07 2.84 8.10 -2.38 -0.02 2.82 16 16 N -0.72 -34.77 5.40 -320.17 -1.73 -36.50 16 17 C -0.25 -13.34 9.97 84.04 0.84 -12.50 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 20 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 21 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 C -0.17 -5.48 7.69 31.18 0.24 -5.24 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.96 7.72 -2.39 -0.02 0.94 16 29 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.16 1.37 7.66 -2.39 -0.02 1.35 16 32 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.42 6.04 8.71 -92.71 -0.81 5.23 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.52 8.09 -2.39 -0.02 2.50 16 36 H 0.38 19.12 7.92 -92.70 -0.73 18.39 16 37 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.85 336.69 1.62 -75.24 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.47 Total: 30.23 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.68 Total: -2.40 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.57 Total: -130.16 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.85 1.62 -75.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022790373.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.232 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds