Wall clock time and date at job start Mon Mar 30 2020 23:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34128 * 125.98849 * 2 1 4 4 C 1.30496 * 109.25650 * 180.25254 * 3 2 1 5 5 N 1.35042 * 108.69916 * 359.75127 * 4 3 2 6 6 H 0.96997 * 126.40116 * 179.97438 * 5 4 3 7 7 C 1.34667 * 125.99000 * 179.82750 * 2 1 3 8 8 C 1.50701 * 126.59077 * 0.02562 * 7 2 1 9 9 C 1.50706 * 109.46973 * 84.71261 * 8 7 2 10 10 O 1.21274 * 119.99795 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99650 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99859 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.85189 * 313.72970 * 12 11 9 14 14 C 1.53786 * 113.61673 * 84.92394 * 12 11 9 15 15 C 1.53779 * 87.08058 * 89.11628 * 14 12 11 16 16 H 1.09004 * 113.61167 * 140.07039 * 15 14 12 17 17 N 1.46496 * 113.61386 * 270.88170 * 15 14 12 18 18 C 1.36941 * 120.00355 * 202.42257 * 17 15 14 19 19 H 1.07995 * 119.99267 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99939 * 179.72626 * 18 17 15 21 21 N 1.31618 * 120.00367 * 0.27804 * 20 18 17 22 22 Si 1.86803 * 119.99533 * 180.27657 * 20 18 17 23 23 H 1.48497 * 109.47568 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47056 * 120.00476 * 22 20 18 25 25 H 1.48503 * 109.47167 * 239.99989 * 22 20 18 26 26 C 1.53780 * 87.08223 * 25.43634 * 15 14 12 27 27 H 1.09007 * 109.46796 * 270.17566 * 1 2 3 28 28 H 1.09002 * 109.46994 * 30.17449 * 1 2 3 29 29 H 1.08999 * 109.47062 * 150.17392 * 1 2 3 30 30 H 1.08005 * 125.65463 * 179.78388 * 4 3 2 31 31 H 1.08998 * 109.47028 * 324.71240 * 8 7 2 32 32 H 1.09003 * 109.46774 * 204.71233 * 8 7 2 33 33 H 0.97002 * 119.99940 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61232 * 334.56838 * 14 12 11 35 35 H 1.09004 * 113.69238 * 203.67637 * 14 12 11 36 36 H 0.97006 * 120.00368 * 22.42652 * 17 15 14 37 37 H 0.97002 * 119.99882 * 179.97438 * 21 20 18 38 38 H 1.08989 * 113.61757 * 89.11691 * 26 15 14 39 39 H 1.09005 * 113.60952 * 220.01938 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0054 5 7 3.5913 -0.6400 -0.0035 6 1 4.3913 -1.1885 -0.0069 7 6 2.2984 -1.0896 0.0033 8 6 1.8473 -2.5275 0.0071 9 6 1.5725 -2.9715 -1.4067 10 8 1.7273 -2.1964 -2.3265 11 7 1.1538 -4.2295 -1.6485 12 6 0.8861 -4.6609 -3.0226 13 1 0.2951 -3.9386 -3.5855 14 6 2.1384 -5.1484 -3.7703 15 6 1.8295 -6.5483 -3.2140 16 1 2.0007 -7.3508 -3.9315 17 7 2.4439 -6.8104 -1.9102 18 6 2.6578 -8.0995 -1.5007 19 1 2.3739 -8.9229 -2.1392 20 6 3.2451 -8.3477 -0.2677 21 7 3.5915 -7.3441 0.5102 22 14 3.5439 -10.1061 0.2875 23 1 3.0689 -11.0439 -0.7614 24 1 4.9967 -10.3133 0.5149 25 1 2.8042 -10.3590 1.5501 26 6 0.3605 -6.1026 -3.1244 27 1 -0.3633 0.0032 1.0277 28 1 -0.3633 0.8884 -0.5166 29 1 -0.3633 -0.8915 -0.5111 30 1 4.4005 1.3688 -0.0101 31 1 0.9379 -2.6214 0.6007 32 1 2.6292 -3.1524 0.4387 33 1 1.0296 -4.8492 -0.9126 34 1 3.0672 -4.7227 -3.3903 35 1 2.0548 -5.0813 -4.8550 36 1 2.6992 -6.0708 -1.3368 37 1 4.0016 -7.5176 1.3720 38 1 -0.2107 -6.2960 -4.0323 39 1 -0.1462 -6.4473 -2.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023025094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:39 Heat of formation + Delta-G solvation = 49.070630 kcal Electronic energy + Delta-G solvation = -21696.409788 eV Core-core repulsion = 18447.786148 eV Total energy + Delta-G solvation = -3248.623639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01788 -39.79270 -37.83216 -33.70718 -33.00720 -32.87152 -32.22371 -29.97188 -28.73536 -25.89623 -25.19477 -24.41509 -22.77742 -21.58087 -20.37900 -19.44321 -18.80898 -17.61973 -17.46843 -16.74454 -15.68735 -15.22878 -14.93824 -14.79279 -14.65062 -14.01443 -13.83457 -13.15066 -13.11545 -13.04451 -12.71733 -12.69338 -12.18086 -12.04360 -11.98921 -11.71008 -11.49593 -10.98300 -10.87264 -10.39229 -10.22751 -9.91462 -9.89584 -9.79111 -9.63640 -9.48049 -9.05289 -8.54401 -8.10633 -7.13181 -5.94498 -3.22774 2.07905 2.92709 3.13863 3.22707 3.33249 3.40398 3.41682 3.63872 4.46054 4.60706 4.83039 5.01432 5.07962 5.16489 5.24570 5.36062 5.38086 5.41905 5.47749 5.57426 5.77849 5.79814 5.89148 6.01808 6.06610 6.11893 6.26498 6.30184 6.36070 6.57905 6.62376 6.78362 6.85440 7.06285 7.46186 7.59543 7.89560 8.15445 8.25880 8.56607 9.37313 9.93176 10.28608 11.28317 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.004520 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.210795 B = 6193.567787 C = 7056.202647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.013 3.987 3 N -0.494 5.494 4 C 0.182 3.818 5 N -0.561 5.561 6 H 0.420 0.580 7 C 0.005 3.995 8 C -0.071 4.071 9 C 0.516 3.484 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.129 3.871 13 H 0.079 0.921 14 C -0.167 4.167 15 C 0.164 3.836 16 H 0.063 0.937 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.206 0.794 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.082 0.918 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 10.019 -1.018 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 N -0.214 5.214 4 C -0.101 4.101 5 N -0.163 5.163 6 H 0.257 0.743 7 C -0.111 4.111 8 C -0.112 4.112 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.355 5.355 12 C 0.024 3.976 13 H 0.097 0.903 14 C -0.207 4.207 15 C 0.052 3.948 16 H 0.081 0.919 17 N -0.346 5.346 18 C -0.373 4.373 19 H 0.092 0.908 20 C -0.207 4.207 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.220 4.220 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.222 0.778 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.966 11.199 -1.633 11.992 hybrid contribution 1.145 -2.084 0.886 2.538 sum -2.821 9.115 -0.747 9.571 Atomic orbital electron populations 1.20004 0.88008 1.02655 1.01666 1.20367 0.96263 0.87828 1.07138 1.70124 1.00578 1.30724 1.20014 1.24794 0.97273 0.81947 1.06101 1.43145 1.08158 1.08670 1.56377 0.74255 1.20233 0.84024 0.95479 1.11392 1.20074 1.04432 0.90777 0.95882 1.20379 0.76921 0.81855 0.90738 1.90696 1.51643 1.53265 1.45975 1.45805 1.67688 1.12660 1.09301 1.21686 0.97477 0.95751 0.82689 0.90327 1.23827 0.98342 0.99014 0.99536 1.21192 0.90568 0.93919 0.89161 0.91877 1.42259 1.71205 1.05815 1.15329 1.19367 1.33265 0.84426 1.00230 0.90848 1.24729 1.01319 0.97486 0.97181 1.69640 1.47700 1.29378 1.11583 0.86091 0.77530 0.84076 0.78316 1.20483 1.21863 1.21787 1.24131 1.01399 0.94467 1.02010 0.91639 0.91309 0.91587 0.77762 0.86741 0.87373 0.75322 0.91539 0.89863 0.78069 0.93473 0.89915 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.14 36.01 0.37 -0.46 16 2 C 0.01 0.20 7.09 -82.85 -0.59 -0.39 16 3 N -0.49 -7.65 11.25 -10.87 -0.12 -7.77 16 4 C 0.18 2.26 13.04 -90.38 -1.18 1.08 16 5 N -0.56 -6.94 6.15 -10.30 -0.06 -7.00 16 6 H 0.42 4.13 8.96 -40.82 -0.37 3.77 16 7 C 0.00 0.07 5.73 -81.60 -0.47 -0.40 16 8 C -0.07 -0.94 5.81 -29.03 -0.17 -1.11 16 9 C 0.52 8.35 7.82 -10.98 -0.09 8.26 16 10 O -0.54 -10.48 15.97 5.56 0.09 -10.39 16 11 N -0.70 -11.18 4.33 -53.02 -0.23 -11.41 16 12 C 0.13 2.07 4.00 -67.12 -0.27 1.80 16 13 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 14 C -0.17 -2.84 7.62 -25.92 -0.20 -3.04 16 15 C 0.16 3.08 4.55 -67.12 -0.31 2.77 16 16 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.71 -16.25 5.02 -52.64 -0.26 -16.51 16 18 C -0.24 -6.26 9.97 -15.06 -0.15 -6.41 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -25.86 13.06 55.49 0.72 -25.14 16 22 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.18 -2.82 7.57 -25.92 -0.20 -3.01 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 30 H 0.21 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.11 1.26 8.04 -51.93 -0.42 0.85 16 32 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.41 6.62 7.83 -40.82 -0.32 6.30 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.38 9.15 6.36 -40.82 -0.26 8.89 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.08 1.11 8.14 -51.94 -0.42 0.69 16 39 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -32.66 331.94 -8.76 -41.43 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -5.54 Total: 16.95 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.34 Total: -1.30 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 0.05 Total: -67.84 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.66 -8.76 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023025094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.496 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds