Wall clock time and date at job start Mon Mar 30 2020 23:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34128 * 125.98849 * 2 1 4 4 C 1.30496 * 109.25650 * 180.25254 * 3 2 1 5 5 N 1.35042 * 108.69916 * 359.75127 * 4 3 2 6 6 H 0.96997 * 126.40116 * 179.97438 * 5 4 3 7 7 C 1.34667 * 125.99000 * 179.82750 * 2 1 3 8 8 C 1.50701 * 126.59077 * 0.02562 * 7 2 1 9 9 C 1.50706 * 109.46973 * 84.71261 * 8 7 2 10 10 O 1.21274 * 119.99795 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99650 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99859 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.85189 * 313.72970 * 12 11 9 14 14 C 1.53786 * 113.61673 * 84.92394 * 12 11 9 15 15 C 1.53779 * 87.08058 * 89.11628 * 14 12 11 16 16 H 1.09004 * 113.61167 * 140.07039 * 15 14 12 17 17 N 1.46496 * 113.61386 * 270.88170 * 15 14 12 18 18 C 1.36941 * 120.00355 * 202.42257 * 17 15 14 19 19 H 1.07995 * 119.99267 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99939 * 179.72626 * 18 17 15 21 21 N 1.31618 * 120.00367 * 0.27804 * 20 18 17 22 22 Si 1.86803 * 119.99533 * 180.27657 * 20 18 17 23 23 H 1.48497 * 109.47568 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47056 * 120.00476 * 22 20 18 25 25 H 1.48503 * 109.47167 * 239.99989 * 22 20 18 26 26 C 1.53780 * 87.08223 * 25.43634 * 15 14 12 27 27 H 1.09007 * 109.46796 * 270.17566 * 1 2 3 28 28 H 1.09002 * 109.46994 * 30.17449 * 1 2 3 29 29 H 1.08999 * 109.47062 * 150.17392 * 1 2 3 30 30 H 1.08005 * 125.65463 * 179.78388 * 4 3 2 31 31 H 1.08998 * 109.47028 * 324.71240 * 8 7 2 32 32 H 1.09003 * 109.46774 * 204.71233 * 8 7 2 33 33 H 0.97002 * 119.99940 * 359.97438 * 11 9 8 34 34 H 1.09004 * 113.61232 * 334.56838 * 14 12 11 35 35 H 1.09004 * 113.69238 * 203.67637 * 14 12 11 36 36 H 0.97006 * 120.00368 * 22.42652 * 17 15 14 37 37 H 0.97002 * 119.99882 * 179.97438 * 21 20 18 38 38 H 1.08989 * 113.61757 * 89.11691 * 26 15 14 39 39 H 1.09005 * 113.60952 * 220.01938 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0054 5 7 3.5913 -0.6400 -0.0035 6 1 4.3913 -1.1885 -0.0069 7 6 2.2984 -1.0896 0.0033 8 6 1.8473 -2.5275 0.0071 9 6 1.5725 -2.9715 -1.4067 10 8 1.7273 -2.1964 -2.3265 11 7 1.1538 -4.2295 -1.6485 12 6 0.8861 -4.6609 -3.0226 13 1 0.2951 -3.9386 -3.5855 14 6 2.1384 -5.1484 -3.7703 15 6 1.8295 -6.5483 -3.2140 16 1 2.0007 -7.3508 -3.9315 17 7 2.4439 -6.8104 -1.9102 18 6 2.6578 -8.0995 -1.5007 19 1 2.3739 -8.9229 -2.1392 20 6 3.2451 -8.3477 -0.2677 21 7 3.5915 -7.3441 0.5102 22 14 3.5439 -10.1061 0.2875 23 1 3.0689 -11.0439 -0.7614 24 1 4.9967 -10.3133 0.5149 25 1 2.8042 -10.3590 1.5501 26 6 0.3605 -6.1026 -3.1244 27 1 -0.3633 0.0032 1.0277 28 1 -0.3633 0.8884 -0.5166 29 1 -0.3633 -0.8915 -0.5111 30 1 4.4005 1.3688 -0.0101 31 1 0.9379 -2.6214 0.6007 32 1 2.6292 -3.1524 0.4387 33 1 1.0296 -4.8492 -0.9126 34 1 3.0672 -4.7227 -3.3903 35 1 2.0548 -5.0813 -4.8550 36 1 2.6992 -6.0708 -1.3368 37 1 4.0016 -7.5176 1.3720 38 1 -0.2107 -6.2960 -4.0323 39 1 -0.1462 -6.4473 -2.2229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023025094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:39 Heat of formation + Delta-G solvation = 27.394910 kcal Electronic energy + Delta-G solvation = -21697.349718 eV Core-core repulsion = 18447.786148 eV Total energy + Delta-G solvation = -3249.563569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.03403 -41.13310 -39.22401 -35.47611 -34.22117 -34.01408 -33.43528 -31.76665 -29.81449 -27.00267 -26.53869 -26.13959 -24.27183 -22.63360 -21.65606 -20.55338 -20.19922 -19.26415 -18.63664 -18.05383 -17.02852 -16.59573 -16.45535 -16.08996 -15.86095 -15.41953 -15.22755 -14.82222 -14.48958 -14.20356 -13.72623 -13.63304 -13.49633 -13.34929 -13.15574 -13.02510 -12.96237 -12.79894 -12.54528 -12.09314 -11.88050 -11.71338 -11.10505 -10.98149 -10.92118 -10.90388 -10.70969 -9.89419 -9.14924 -8.99118 -7.94782 -5.21726 1.04575 1.49185 1.51585 1.59552 1.65688 2.09923 2.24824 2.46669 2.57631 3.38694 3.63566 3.67553 3.81721 3.85045 3.95024 4.06598 4.14646 4.29075 4.40792 4.42980 4.46364 4.56151 4.85895 4.86868 4.92668 5.00343 5.02965 5.08854 5.09584 5.25520 5.27324 5.38947 5.54777 5.75038 5.83201 6.29648 6.54825 6.62089 7.13867 7.28523 7.36545 8.10453 8.36089 9.28265 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.004520 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.210795 B = 6193.567787 C = 7056.202647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 N -0.533 5.533 4 C 0.191 3.809 5 N -0.559 5.559 6 H 0.430 0.570 7 C -0.013 4.013 8 C -0.062 4.062 9 C 0.517 3.483 10 O -0.573 6.573 11 N -0.700 5.700 12 C 0.129 3.871 13 H 0.087 0.913 14 C -0.159 4.159 15 C 0.146 3.854 16 H 0.063 0.937 17 N -0.717 5.717 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.962 5.962 22 Si 0.966 3.034 23 H -0.270 1.270 24 H -0.299 1.299 25 H -0.293 1.293 26 C -0.156 4.156 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.246 0.754 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.409 0.591 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.378 0.622 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 9.750 -1.457 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 N -0.253 5.253 4 C -0.093 4.093 5 N -0.162 5.162 6 H 0.270 0.730 7 C -0.130 4.130 8 C -0.103 4.103 9 C 0.304 3.696 10 O -0.453 6.453 11 N -0.352 5.352 12 C 0.024 3.976 13 H 0.105 0.895 14 C -0.198 4.198 15 C 0.035 3.965 16 H 0.081 0.919 17 N -0.357 5.357 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.258 4.258 21 N -0.613 5.613 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.226 1.226 25 H -0.221 1.221 26 C -0.197 4.197 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.262 0.738 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.246 0.754 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.212 0.788 37 H 0.060 0.940 38 H 0.133 0.867 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.469 10.904 -2.109 11.972 hybrid contribution 1.319 -1.963 0.929 2.541 sum -3.151 8.941 -1.179 9.553 Atomic orbital electron populations 1.20039 0.86994 1.02423 1.02711 1.20810 0.97394 0.88168 1.07369 1.70125 1.01937 1.31417 1.21855 1.25631 0.97671 0.82325 1.03644 1.43204 1.08116 1.08984 1.55936 0.73033 1.20370 0.84775 0.95625 1.12186 1.20057 1.05578 0.90414 0.94236 1.20810 0.75920 0.81398 0.91510 1.90674 1.53228 1.54100 1.47269 1.45843 1.67347 1.12626 1.09359 1.21739 0.96951 0.96195 0.82725 0.89512 1.23802 0.97516 0.97423 1.01099 1.21465 0.92583 0.94901 0.87510 0.91862 1.42353 1.71920 1.04673 1.16742 1.19676 1.31931 0.85703 1.00042 0.90654 1.25386 1.02223 1.00532 0.97700 1.69757 1.49011 1.30791 1.11721 0.85179 0.76636 0.80713 0.77814 1.19415 1.22649 1.22053 1.23961 0.99178 0.93395 1.03170 0.89928 0.91663 0.91609 0.73823 0.84510 0.87023 0.75401 0.94223 0.87255 0.78843 0.94007 0.86653 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.14 71.24 0.72 -0.86 16 2 C -0.01 -0.26 7.09 41.39 0.29 0.03 16 3 N -0.53 -16.12 11.25 -188.31 -2.12 -18.24 16 4 C 0.19 4.46 13.04 180.26 2.35 6.81 16 5 N -0.56 -13.30 6.15 -186.49 -1.15 -14.45 16 6 H 0.43 8.08 8.96 -92.71 -0.83 7.24 16 7 C -0.01 -0.37 5.73 40.95 0.23 -0.14 16 8 C -0.06 -1.61 5.81 29.10 0.17 -1.44 16 9 C 0.52 16.48 7.82 87.66 0.69 17.16 16 10 O -0.57 -22.14 15.97 -3.01 -0.05 -22.19 16 11 N -0.70 -21.79 4.33 -440.04 -1.90 -23.69 16 12 C 0.13 3.93 4.00 45.52 0.18 4.11 16 13 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 14 C -0.16 -5.17 7.62 31.12 0.24 -4.93 16 15 C 0.15 5.27 4.55 45.52 0.21 5.47 16 16 H 0.06 2.27 8.12 -2.38 -0.02 2.25 16 17 N -0.72 -32.68 5.02 -320.46 -1.61 -34.29 16 18 C -0.24 -12.38 9.97 84.03 0.84 -11.54 16 19 H 0.08 3.75 7.83 -2.91 -0.02 3.72 16 20 C -0.07 -3.47 5.50 84.86 0.47 -3.01 16 21 N -0.96 -53.49 13.06 21.65 0.28 -53.21 16 22 Si 0.97 43.36 29.55 68.60 2.03 45.38 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 C -0.16 -4.55 7.57 31.12 0.24 -4.32 16 27 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.58 7.89 -2.39 -0.02 1.57 16 30 H 0.25 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.14 2.87 8.04 -2.39 -0.02 2.85 16 32 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.41 13.00 7.83 -92.71 -0.73 12.27 16 34 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.38 18.04 6.36 -92.70 -0.59 17.45 16 37 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 38 H 0.12 2.64 8.14 -2.39 -0.02 2.63 16 39 H 0.06 2.05 8.13 -2.38 -0.02 2.03 16 Total: -1.00 -69.44 331.94 1.05 -68.39 By element: Atomic # 1 Polarization: 45.99 SS G_CDS: -1.06 Total: 44.94 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.62 Total: 7.35 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -6.50 Total: -143.88 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -69.44 1.05 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023025094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.786 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds