Wall clock time and date at job start Tue Mar 31 2020 00:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47143 * 2 1 4 4 N 1.33323 * 126.10270 * 270.11873 * 3 2 1 5 5 C 1.30860 * 109.68042 * 180.28012 * 4 3 2 6 6 N 1.34497 * 109.16259 * 359.76167 * 5 4 3 7 7 H 0.97000 * 126.46819 * 180.02562 * 6 5 4 8 8 C 1.36654 * 126.11015 * 90.00214 * 3 2 1 9 9 C 1.46764 * 126.84258 * 359.97438 * 8 3 2 10 10 O 1.21688 * 119.99890 * 359.70565 * 9 8 3 11 11 N 1.34774 * 120.00149 * 179.71302 * 9 8 3 12 12 C 1.46504 * 120.00232 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84919 * 336.18786 * 12 11 9 14 14 C 1.53782 * 113.61834 * 107.49820 * 12 11 9 15 15 C 1.53775 * 87.08309 * 139.98015 * 14 12 11 16 16 H 1.09005 * 113.68977 * 89.12360 * 15 14 12 17 17 N 1.46499 * 113.61628 * 220.01891 * 15 14 12 18 18 C 1.36935 * 119.99938 * 252.49687 * 17 15 14 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99577 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00184 * 22 20 18 26 26 C 1.53784 * 113.61332 * 204.99818 * 12 11 9 27 27 H 1.08997 * 109.47179 * 299.99851 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46843 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47261 * 120.00133 * 2 1 3 32 32 H 1.08000 * 125.41571 * 179.79092 * 5 4 3 33 33 H 0.97003 * 119.99855 * 359.97438 * 11 9 8 34 34 H 1.09003 * 113.61105 * 25.43091 * 14 12 11 35 35 H 1.08997 * 113.61173 * 254.53414 * 14 12 11 36 36 H 0.96999 * 119.99984 * 72.50304 * 17 15 14 37 37 H 0.97000 * 120.00284 * 359.97438 * 21 20 18 38 38 H 1.08996 * 113.61383 * 105.46808 * 26 12 11 39 39 H 1.08999 * 113.69209 * 334.57353 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1622 -1.0772 5 6 2.7169 3.3434 -0.7073 6 7 2.7398 3.4035 0.6362 7 1 3.0128 4.1626 1.1747 8 6 2.3008 2.1801 1.1040 9 6 2.1569 1.7746 2.5072 10 8 1.7561 0.6585 2.7799 11 7 2.4687 2.6384 3.4936 12 6 2.3256 2.2335 4.8943 13 1 1.6053 1.4267 5.0302 14 6 3.6672 1.9903 5.6055 15 6 3.0501 2.6769 6.8353 16 1 2.5286 1.9918 7.5037 17 7 3.9793 3.5630 7.5407 18 6 4.4901 3.1919 8.7558 19 1 4.2077 2.2462 9.1943 20 6 5.3702 4.0318 9.4244 21 7 5.7140 5.1845 8.8902 22 14 6.0676 3.5252 11.0816 23 1 6.9751 4.5886 11.5827 24 1 4.9565 3.3282 12.0470 25 1 6.8252 2.2567 10.9331 26 6 2.1181 3.4134 5.8585 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0030 4.1429 -1.3746 33 1 2.7885 3.5280 3.2762 34 1 4.4993 2.5426 5.1686 35 1 3.8936 0.9356 5.7618 36 1 4.2326 4.4126 7.1471 37 1 5.3527 5.4470 8.0291 38 1 1.0939 3.5075 6.2193 39 1 2.5260 4.3554 5.4921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023036151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:11 Heat of formation + Delta-G solvation = 43.968805 kcal Electronic energy + Delta-G solvation = -21041.189199 eV Core-core repulsion = 17792.344328 eV Total energy + Delta-G solvation = -3248.844871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49112 -39.77014 -38.00391 -34.81848 -34.14062 -33.03781 -32.08133 -29.84121 -29.10449 -25.31007 -24.97444 -23.90950 -23.10983 -22.37776 -20.96797 -20.18490 -19.40880 -18.66825 -17.49214 -16.41751 -16.19837 -15.79865 -15.07637 -15.06429 -14.41648 -14.36820 -14.06614 -13.83929 -13.69410 -13.56448 -13.04747 -12.49089 -12.37002 -12.12003 -11.58994 -11.17382 -11.08450 -10.94879 -10.72286 -10.60235 -10.58154 -10.38196 -10.29571 -10.01705 -9.86916 -9.24227 -9.07653 -8.95704 -8.68996 -7.13829 -6.19755 -3.20327 1.07202 2.59165 2.60465 3.05832 3.17013 3.47883 3.50800 3.68188 4.15925 4.55526 4.61627 4.73520 4.84696 4.94847 5.04747 5.18320 5.33515 5.37977 5.40236 5.44150 5.53995 5.68031 5.73821 5.90719 5.92517 6.04366 6.09953 6.11972 6.14019 6.27983 6.35653 6.45761 6.54901 6.85427 6.90922 7.35294 7.66197 7.73270 8.05208 8.65816 9.11305 9.97848 10.11932 11.28218 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035729 B = 0.003096 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.499868 B = 9042.406656 C = 9486.288128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C 0.099 3.901 4 N -0.499 5.499 5 C 0.217 3.783 6 N -0.556 5.556 7 H 0.423 0.577 8 C -0.090 4.090 9 C 0.592 3.408 10 O -0.523 6.523 11 N -0.714 5.714 12 C 0.121 3.879 13 H 0.114 0.886 14 C -0.176 4.176 15 C 0.175 3.825 16 H 0.083 0.917 17 N -0.722 5.722 18 C -0.337 4.337 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.294 1.294 26 C -0.161 4.161 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.215 0.785 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.368 0.632 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -3.226 -18.354 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.035 4.035 4 N -0.218 5.218 5 C -0.067 4.067 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.205 4.205 9 C 0.379 3.621 10 O -0.399 6.399 11 N -0.363 5.363 12 C 0.016 3.984 13 H 0.132 0.868 14 C -0.218 4.218 15 C 0.062 3.938 16 H 0.101 0.899 17 N -0.361 5.361 18 C -0.468 4.468 19 H 0.085 0.915 20 C -0.241 4.241 21 N -0.588 5.588 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.201 4.201 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.232 0.768 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.782 -4.040 -17.516 19.588 hybrid contribution -0.390 1.167 -0.613 1.374 sum -8.172 -2.873 -18.128 20.092 Atomic orbital electron populations 1.21609 0.94384 1.01787 1.01712 1.20066 0.96232 0.88725 1.03745 1.21060 0.98855 0.97003 0.86595 1.70134 1.18486 1.02704 1.30500 1.25148 1.01476 0.98023 0.82058 1.43360 1.50273 1.13552 1.08869 0.73855 1.21053 1.15821 0.88320 0.95348 1.16868 0.77672 0.85066 0.82540 1.90816 1.46541 1.19722 1.82802 1.45960 1.67231 1.16365 1.06723 1.22542 0.99810 0.98835 0.77199 0.86783 1.24330 0.96234 1.01719 0.99519 1.21290 0.90207 0.92271 0.90041 0.89921 1.42357 1.52090 1.20118 1.21503 1.20119 1.25220 1.04727 0.96712 0.91485 1.25820 0.97961 0.95123 1.05201 1.70907 1.46841 1.21827 1.19179 0.83241 0.76077 0.75068 0.74571 1.21002 1.22137 1.22142 1.23890 1.01261 0.97475 0.97430 0.92598 0.92970 0.92159 0.90671 0.88711 0.76838 0.77489 0.90475 0.91898 0.79894 0.93507 0.91246 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.05 -0.58 5.93 -27.88 -0.17 -0.74 16 3 C 0.10 1.25 6.40 -82.52 -0.53 0.72 16 4 N -0.50 -5.84 11.20 -10.64 -0.12 -5.96 16 5 C 0.22 1.74 13.01 -90.57 -1.18 0.57 16 6 N -0.56 -4.44 6.07 -10.79 -0.07 -4.50 16 7 H 0.42 2.02 8.32 -40.82 -0.34 1.68 16 8 C -0.09 -1.06 7.07 -82.15 -0.58 -1.64 16 9 C 0.59 8.05 7.79 -12.82 -0.10 7.95 16 10 O -0.52 -8.57 14.42 5.20 0.07 -8.49 16 11 N -0.71 -8.66 5.35 -54.29 -0.29 -8.95 16 12 C 0.12 1.71 4.24 -67.11 -0.28 1.43 16 13 H 0.11 1.69 7.46 -51.93 -0.39 1.30 16 14 C -0.18 -2.98 7.68 -25.92 -0.20 -3.18 16 15 C 0.17 3.31 4.48 -67.12 -0.30 3.01 16 16 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 17 N -0.72 -17.38 5.40 -52.64 -0.28 -17.67 16 18 C -0.34 -9.27 9.97 -15.06 -0.15 -9.42 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 21 N -0.94 -28.51 13.70 55.49 0.76 -27.75 16 22 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.16 -2.39 7.58 -25.91 -0.20 -2.59 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.22 6.49 -51.93 -0.34 0.89 16 32 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.39 3.74 7.97 -40.82 -0.33 3.41 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.37 9.02 6.75 -40.82 -0.28 8.75 16 37 H 0.25 7.49 6.77 -40.82 -0.28 7.22 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -34.51 329.77 -8.82 -43.34 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.37 Total: 10.96 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.41 Total: -6.31 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.00 Total: -64.84 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.51 -8.82 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023036151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.307 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds