Wall clock time and date at job start Tue Mar 31 2020 00:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47143 * 2 1 4 4 N 1.33323 * 126.10270 * 270.11873 * 3 2 1 5 5 C 1.30860 * 109.68042 * 180.28012 * 4 3 2 6 6 N 1.34497 * 109.16259 * 359.76167 * 5 4 3 7 7 H 0.97000 * 126.46819 * 180.02562 * 6 5 4 8 8 C 1.36654 * 126.11015 * 90.00214 * 3 2 1 9 9 C 1.46764 * 126.84258 * 359.97438 * 8 3 2 10 10 O 1.21688 * 119.99890 * 359.70565 * 9 8 3 11 11 N 1.34774 * 120.00149 * 179.71302 * 9 8 3 12 12 C 1.46504 * 120.00232 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84919 * 336.18786 * 12 11 9 14 14 C 1.53782 * 113.61834 * 107.49820 * 12 11 9 15 15 C 1.53775 * 87.08309 * 139.98015 * 14 12 11 16 16 H 1.09005 * 113.68977 * 89.12360 * 15 14 12 17 17 N 1.46499 * 113.61628 * 220.01891 * 15 14 12 18 18 C 1.36935 * 119.99938 * 252.49687 * 17 15 14 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00227 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99577 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00184 * 22 20 18 26 26 C 1.53784 * 113.61332 * 204.99818 * 12 11 9 27 27 H 1.08997 * 109.47179 * 299.99851 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46843 * 239.99744 * 2 1 3 31 31 H 1.09004 * 109.47261 * 120.00133 * 2 1 3 32 32 H 1.08000 * 125.41571 * 179.79092 * 5 4 3 33 33 H 0.97003 * 119.99855 * 359.97438 * 11 9 8 34 34 H 1.09003 * 113.61105 * 25.43091 * 14 12 11 35 35 H 1.08997 * 113.61173 * 254.53414 * 14 12 11 36 36 H 0.96999 * 119.99984 * 72.50304 * 17 15 14 37 37 H 0.97000 * 120.00284 * 359.97438 * 21 20 18 38 38 H 1.08996 * 113.61383 * 105.46808 * 26 12 11 39 39 H 1.08999 * 113.69209 * 334.57353 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1622 -1.0772 5 6 2.7169 3.3434 -0.7073 6 7 2.7398 3.4035 0.6362 7 1 3.0128 4.1626 1.1747 8 6 2.3008 2.1801 1.1040 9 6 2.1569 1.7746 2.5072 10 8 1.7561 0.6585 2.7799 11 7 2.4687 2.6384 3.4936 12 6 2.3256 2.2335 4.8943 13 1 1.6053 1.4267 5.0302 14 6 3.6672 1.9903 5.6055 15 6 3.0501 2.6769 6.8353 16 1 2.5286 1.9918 7.5037 17 7 3.9793 3.5630 7.5407 18 6 4.4901 3.1919 8.7558 19 1 4.2077 2.2462 9.1943 20 6 5.3702 4.0318 9.4244 21 7 5.7140 5.1845 8.8902 22 14 6.0676 3.5252 11.0816 23 1 6.9751 4.5886 11.5827 24 1 4.9565 3.3282 12.0470 25 1 6.8252 2.2567 10.9331 26 6 2.1181 3.4134 5.8585 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.0030 4.1429 -1.3746 33 1 2.7885 3.5280 3.2762 34 1 4.4993 2.5426 5.1686 35 1 3.8936 0.9356 5.7618 36 1 4.2326 4.4126 7.1471 37 1 5.3527 5.4470 8.0291 38 1 1.0939 3.5075 6.2193 39 1 2.5260 4.3554 5.4921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023036151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:11 Heat of formation + Delta-G solvation = 19.726413 kcal Electronic energy + Delta-G solvation = -21042.240428 eV Core-core repulsion = 17792.344328 eV Total energy + Delta-G solvation = -3249.896100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.27102 -40.96035 -39.30245 -36.22697 -35.37691 -34.32806 -32.97512 -31.60068 -30.05600 -26.66921 -26.38806 -25.36393 -24.21080 -23.42310 -22.02283 -21.34404 -20.44760 -19.68750 -19.41098 -17.60540 -17.23113 -16.72904 -16.62587 -16.04404 -15.70742 -15.52471 -15.41742 -15.27962 -14.85304 -14.60229 -14.34209 -13.79228 -13.44940 -13.32888 -12.91241 -12.69190 -12.43290 -12.27394 -12.19084 -12.00830 -11.87215 -11.84180 -11.50713 -11.22723 -11.06503 -10.92138 -10.85084 -10.21165 -9.56132 -9.12293 -8.41250 -5.35427 0.21234 1.58606 1.67562 1.81762 1.83775 1.84752 2.10312 2.19146 2.70436 3.35268 3.47571 3.54117 3.69169 3.73625 3.80381 4.00279 4.10393 4.18379 4.18528 4.46548 4.51697 4.63589 4.64937 4.73417 4.74396 4.77437 4.97585 5.04172 5.06982 5.19091 5.25136 5.28986 5.50231 5.50544 5.60512 6.28294 6.39967 6.48757 6.89152 7.02836 7.07120 7.97448 8.07950 9.10762 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035729 B = 0.003096 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.499868 B = 9042.406656 C = 9486.288128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.085 3.915 4 N -0.533 5.533 5 C 0.241 3.759 6 N -0.542 5.542 7 H 0.439 0.561 8 C -0.110 4.110 9 C 0.592 3.408 10 O -0.556 6.556 11 N -0.703 5.703 12 C 0.141 3.859 13 H 0.112 0.888 14 C -0.169 4.169 15 C 0.153 3.847 16 H 0.077 0.923 17 N -0.735 5.735 18 C -0.336 4.336 19 H 0.067 0.933 20 C -0.102 4.102 21 N -0.975 5.975 22 Si 1.125 2.875 23 H -0.293 1.293 24 H -0.277 1.277 25 H -0.280 1.280 26 C -0.139 4.139 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.263 0.737 33 H 0.407 0.593 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.363 0.637 37 H 0.245 0.755 38 H 0.084 0.916 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -2.666 -19.526 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.049 4.049 4 N -0.253 5.253 5 C -0.044 4.044 6 N -0.148 5.148 7 H 0.281 0.719 8 C -0.226 4.226 9 C 0.380 3.620 10 O -0.435 6.435 11 N -0.353 5.353 12 C 0.035 3.965 13 H 0.130 0.870 14 C -0.212 4.212 15 C 0.043 3.957 16 H 0.095 0.905 17 N -0.375 5.375 18 C -0.468 4.468 19 H 0.085 0.915 20 C -0.294 4.294 21 N -0.623 5.623 22 Si 0.950 3.050 23 H -0.219 1.219 24 H -0.203 1.203 25 H -0.206 1.206 26 C -0.179 4.179 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.279 0.721 33 H 0.243 0.757 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.195 0.805 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.231 -3.475 -18.716 20.739 hybrid contribution -0.285 0.971 -0.374 1.078 sum -8.516 -2.504 -19.090 21.052 Atomic orbital electron populations 1.21539 0.93692 1.02469 1.01002 1.20048 0.96847 0.88896 1.03159 1.21237 0.98978 0.97396 0.87309 1.70142 1.20320 1.04254 1.30610 1.26110 0.98187 0.97759 0.82314 1.43288 1.49509 1.12875 1.09154 0.71918 1.20711 1.17757 0.90004 0.94120 1.17090 0.76929 0.84597 0.83361 1.90798 1.48070 1.21169 1.83454 1.45744 1.66990 1.16993 1.05573 1.22165 0.97671 0.98398 0.78223 0.87002 1.24158 0.97393 1.00739 0.98867 1.21612 0.90717 0.92708 0.90669 0.90462 1.42491 1.53204 1.20708 1.21088 1.20455 1.24312 1.04326 0.97692 0.91545 1.27138 0.98947 0.94993 1.08274 1.71002 1.48541 1.23268 1.19465 0.82654 0.75934 0.74953 0.71458 1.21901 1.20306 1.20606 1.23682 1.00962 0.97612 0.95639 0.94161 0.92600 0.90844 0.89989 0.90434 0.72113 0.75723 0.91183 0.92727 0.80468 0.94422 0.89736 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.05 -1.20 5.93 29.85 0.18 -1.02 16 3 C 0.09 2.07 6.40 41.96 0.27 2.34 16 4 N -0.53 -11.43 11.20 -187.59 -2.10 -13.53 16 5 C 0.24 3.05 13.01 180.33 2.35 5.40 16 6 N -0.54 -7.14 6.07 -188.05 -1.14 -8.29 16 7 H 0.44 2.74 8.32 -92.71 -0.77 1.97 16 8 C -0.11 -2.45 7.07 40.01 0.28 -2.16 16 9 C 0.59 15.59 7.79 86.47 0.67 16.26 16 10 O -0.56 -18.27 14.42 -4.31 -0.06 -18.33 16 11 N -0.70 -15.92 5.35 -443.90 -2.38 -18.29 16 12 C 0.14 3.82 4.24 45.52 0.19 4.01 16 13 H 0.11 3.20 7.46 -2.39 -0.02 3.18 16 14 C -0.17 -5.66 7.68 31.12 0.24 -5.42 16 15 C 0.15 5.74 4.48 45.52 0.20 5.95 16 16 H 0.08 2.96 8.10 -2.38 -0.02 2.94 16 17 N -0.74 -35.49 5.40 -320.44 -1.73 -37.22 16 18 C -0.34 -18.55 9.97 84.03 0.84 -17.71 16 19 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 20 C -0.10 -5.83 5.50 84.86 0.47 -5.36 16 21 N -0.97 -59.61 13.70 21.65 0.30 -59.32 16 22 Si 1.13 51.20 29.92 68.60 2.05 53.25 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.14 -3.90 7.58 31.12 0.24 -3.66 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.06 6.49 -2.39 -0.02 2.05 16 32 H 0.26 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.41 6.78 7.97 -92.71 -0.74 6.04 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.36 17.95 6.75 -92.71 -0.63 17.33 16 37 H 0.25 14.76 6.77 -92.71 -0.63 14.13 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 Total: -1.00 -75.54 329.77 0.68 -74.87 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.90 Total: 30.24 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 6.64 Total: -3.38 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -7.05 Total: -136.65 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -75.54 0.68 -74.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023036151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.593 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds