Wall clock time and date at job start Mon Mar 30 2020 23:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65039 * 2 1 4 4 C 1.34129 * 109.25671 * 179.73373 * 3 2 1 5 5 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 6 6 N 1.35047 * 125.65399 * 179.97438 * 2 1 3 7 7 C 1.46507 * 126.39328 * 0.02641 * 6 2 1 8 8 C 1.50694 * 109.47371 * 85.01751 * 7 6 2 9 9 O 1.21287 * 120.00054 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00160 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00517 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84360 * 334.66731 * 11 10 8 13 13 C 1.53779 * 113.61711 * 105.85869 * 11 10 8 14 14 C 1.54054 * 86.98509 * 89.16410 * 13 11 10 15 15 H 1.09003 * 113.69677 * 139.98551 * 14 13 11 16 16 N 1.46497 * 113.61446 * 270.89007 * 14 13 11 17 17 C 1.36944 * 119.99507 * 252.48828 * 16 14 13 18 18 H 1.07989 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99424 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00564 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99536 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47202 * 59.99822 * 21 19 17 23 23 H 1.48497 * 109.47149 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47140 * 300.00007 * 21 19 17 25 25 C 1.53780 * 113.61798 * 203.47262 * 11 10 8 26 26 H 1.09000 * 109.46827 * 270.02260 * 1 2 3 27 27 H 1.09001 * 109.47579 * 30.02373 * 1 2 3 28 28 H 1.09000 * 109.47253 * 150.02525 * 1 2 3 29 29 H 1.08003 * 125.99108 * 180.25065 * 4 3 2 30 30 H 1.08002 * 126.59556 * 179.87817 * 5 4 3 31 31 H 1.09000 * 109.46583 * 205.02344 * 7 6 2 32 32 H 1.09008 * 109.46472 * 325.01713 * 7 6 2 33 33 H 0.97009 * 119.99750 * 0.02562 * 10 8 7 34 34 H 1.08997 * 113.61683 * 203.66787 * 13 11 10 35 35 H 1.09002 * 113.61600 * 334.57313 * 13 11 10 36 36 H 0.97002 * 120.00496 * 72.48717 * 16 14 13 37 37 H 0.97002 * 120.00190 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61401 * 25.42664 * 25 11 10 39 39 H 1.09002 * 113.61583 * 156.24862 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0059 5 6 3.5926 -0.6642 0.0007 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4911 0.0006 8 6 1.5708 -2.9312 -1.4148 9 8 1.7384 -2.1571 -2.3334 10 7 1.1427 -4.1853 -1.6601 11 6 0.8790 -4.6135 -3.0361 12 1 0.6342 -3.7829 -3.6982 13 6 1.9516 -5.5581 -3.6036 14 6 1.1188 -6.7185 -3.0265 15 1 1.0677 -7.5888 -3.6809 16 7 1.4705 -7.0639 -1.6470 17 6 2.1535 -8.2213 -1.3838 18 1 2.4324 -8.8796 -2.1932 19 6 2.4872 -8.5483 -0.0767 20 7 2.1467 -7.7463 0.9098 21 14 3.4195 -10.1268 0.2822 22 1 4.7245 -10.1029 -0.4259 23 1 3.6512 -10.2433 1.7444 24 1 2.6232 -11.2895 -0.1864 25 6 -0.1036 -5.7920 -3.1371 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 4.4098 1.3411 0.0112 30 1 4.4777 -1.2832 0.0014 31 1 2.6163 -3.1236 0.4357 32 1 0.9293 -2.5770 0.5895 33 1 1.0090 -4.8046 -0.9255 34 1 2.0029 -5.5567 -4.6924 35 1 2.9280 -5.4432 -3.1328 36 1 1.2196 -6.4728 -0.9199 37 1 2.3796 -7.9750 1.8233 38 1 -0.7854 -5.8659 -2.2899 39 1 -0.6144 -5.8536 -4.0981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023091370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:01 Heat of formation + Delta-G solvation = 66.687858 kcal Electronic energy + Delta-G solvation = -21676.857854 eV Core-core repulsion = 18428.998155 eV Total energy + Delta-G solvation = -3247.859699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05881 -39.94501 -38.05732 -33.91406 -33.80026 -32.75382 -31.69335 -30.08252 -28.03127 -26.67115 -25.24906 -24.55557 -22.91179 -21.33248 -20.76235 -19.71781 -19.00237 -17.71993 -17.11214 -17.04051 -15.60916 -15.39077 -15.10563 -14.77290 -14.45291 -14.14996 -13.93519 -13.60516 -13.27733 -13.09149 -12.95963 -12.63542 -12.52745 -12.34889 -12.16649 -11.96400 -11.60458 -10.98169 -10.93951 -10.35870 -10.30477 -10.25286 -9.97116 -9.90499 -9.72521 -9.34504 -9.05532 -8.75870 -8.23627 -7.20552 -6.00119 -3.28720 2.04238 2.59095 2.66598 3.24840 3.32243 3.36678 3.37618 3.39734 4.41122 4.53174 4.63193 4.66910 4.84889 4.95095 5.01582 5.12936 5.30894 5.32651 5.38387 5.45764 5.50754 5.72534 5.76931 5.80488 5.88499 6.02147 6.09350 6.19359 6.35152 6.43395 6.58242 6.67872 6.83797 6.94827 7.19934 7.53886 7.64042 8.18256 8.19200 8.27959 9.30564 9.83585 10.17037 11.22898 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.004443 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.270015 B = 6300.910065 C = 7138.011866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.216 3.784 3 N -0.495 5.495 4 C -0.032 4.032 5 C -0.047 4.047 6 N -0.438 5.438 7 C 0.082 3.918 8 C 0.499 3.501 9 O -0.533 6.533 10 N -0.694 5.694 11 C 0.124 3.876 12 H 0.091 0.909 13 C -0.186 4.186 14 C 0.164 3.836 15 H 0.068 0.932 16 N -0.704 5.704 17 C -0.245 4.245 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.937 5.937 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.166 4.166 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.377 0.623 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 9.576 -1.904 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 N -0.215 5.215 4 C -0.179 4.179 5 C -0.180 4.180 6 N -0.120 5.120 7 C -0.045 4.045 8 C 0.283 3.717 9 O -0.409 6.409 10 N -0.348 5.348 11 C 0.018 3.982 12 H 0.109 0.891 13 C -0.228 4.228 14 C 0.052 3.948 15 H 0.086 0.914 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.585 5.585 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.206 4.206 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.248 0.752 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.213 0.787 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.503 10.601 -2.510 11.443 hybrid contribution 0.954 -1.937 0.801 2.303 sum -2.549 8.664 -1.709 9.191 Atomic orbital electron populations 1.20162 0.85296 1.04071 1.03109 1.23189 0.95562 0.81237 1.04654 1.70206 1.02306 1.28129 1.20847 1.22177 0.94724 0.92642 1.08361 1.22677 0.86864 0.96918 1.11499 1.44841 1.06759 1.05999 1.54427 1.21736 1.04737 0.81574 0.96465 1.20591 0.77702 0.82554 0.90839 1.90750 1.51409 1.53154 1.45585 1.45809 1.66658 1.12582 1.09781 1.21801 0.97624 0.96049 0.82681 0.89129 1.24329 0.99479 0.99212 0.99824 1.21273 0.91375 0.93945 0.88246 0.91421 1.42192 1.66730 1.24702 1.00777 1.19261 1.28146 0.97734 0.92412 0.90806 1.24727 1.01332 0.98952 0.95518 1.69588 1.51782 1.37995 0.99118 0.86212 0.79737 0.82922 0.76988 1.21160 1.21596 1.21101 1.23862 0.97999 0.96358 1.02392 0.90235 0.89235 0.91080 0.81460 0.81017 0.85316 0.85985 0.75194 0.90340 0.91124 0.78742 0.93225 0.90984 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.04 36.00 0.36 -0.39 16 2 C 0.22 3.18 7.89 -155.42 -1.23 1.95 16 3 N -0.50 -8.05 11.25 -10.82 -0.12 -8.17 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 5 C -0.05 -0.66 11.58 -16.56 -0.19 -0.85 16 6 N -0.44 -6.20 2.24 -115.18 -0.26 -6.46 16 7 C 0.08 1.01 6.16 -5.19 -0.03 0.98 16 8 C 0.50 7.69 7.90 -10.99 -0.09 7.60 16 9 O -0.53 -10.09 16.04 5.55 0.09 -10.00 16 10 N -0.69 -10.59 5.12 -53.02 -0.27 -10.86 16 11 C 0.12 1.91 4.29 -67.12 -0.29 1.62 16 12 H 0.09 1.41 7.50 -51.93 -0.39 1.02 16 13 C -0.19 -3.10 7.70 -25.78 -0.20 -3.30 16 14 C 0.16 2.94 4.57 -66.97 -0.31 2.63 16 15 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 16 N -0.70 -15.61 5.18 -52.50 -0.27 -15.88 16 17 C -0.24 -6.24 9.97 -15.06 -0.15 -6.39 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.94 -25.39 13.06 55.49 0.72 -24.66 16 21 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.17 -2.42 7.58 -25.91 -0.20 -2.62 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 29 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.12 1.18 7.91 -51.92 -0.41 0.76 16 33 H 0.41 6.39 6.16 -40.82 -0.25 6.14 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.38 8.41 5.34 -40.82 -0.22 8.19 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -32.14 330.90 -8.22 -40.36 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.45 Total: 14.50 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.62 Total: 0.24 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.20 Total: -66.04 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.14 -8.22 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023091370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.048 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds