Wall clock time and date at job start Mon Mar 30 2020 23:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30498 * 125.65039 * 2 1 4 4 C 1.34129 * 109.25671 * 179.73373 * 3 2 1 5 5 C 1.34666 * 108.02165 * 0.40230 * 4 3 2 6 6 N 1.35047 * 125.65399 * 179.97438 * 2 1 3 7 7 C 1.46507 * 126.39328 * 0.02641 * 6 2 1 8 8 C 1.50694 * 109.47371 * 85.01751 * 7 6 2 9 9 O 1.21287 * 120.00054 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00160 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00517 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84360 * 334.66731 * 11 10 8 13 13 C 1.53779 * 113.61711 * 105.85869 * 11 10 8 14 14 C 1.54054 * 86.98509 * 89.16410 * 13 11 10 15 15 H 1.09003 * 113.69677 * 139.98551 * 14 13 11 16 16 N 1.46497 * 113.61446 * 270.89007 * 14 13 11 17 17 C 1.36944 * 119.99507 * 252.48828 * 16 14 13 18 18 H 1.07989 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99424 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00564 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99536 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47202 * 59.99822 * 21 19 17 23 23 H 1.48497 * 109.47149 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47140 * 300.00007 * 21 19 17 25 25 C 1.53780 * 113.61798 * 203.47262 * 11 10 8 26 26 H 1.09000 * 109.46827 * 270.02260 * 1 2 3 27 27 H 1.09001 * 109.47579 * 30.02373 * 1 2 3 28 28 H 1.09000 * 109.47253 * 150.02525 * 1 2 3 29 29 H 1.08003 * 125.99108 * 180.25065 * 4 3 2 30 30 H 1.08002 * 126.59556 * 179.87817 * 5 4 3 31 31 H 1.09000 * 109.46583 * 205.02344 * 7 6 2 32 32 H 1.09008 * 109.46472 * 325.01713 * 7 6 2 33 33 H 0.97009 * 119.99750 * 0.02562 * 10 8 7 34 34 H 1.08997 * 113.61683 * 203.66787 * 13 11 10 35 35 H 1.09002 * 113.61600 * 334.57313 * 13 11 10 36 36 H 0.97002 * 120.00496 * 72.48717 * 16 14 13 37 37 H 0.97002 * 120.00190 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61401 * 25.42664 * 25 11 10 39 39 H 1.09002 * 113.61583 * 156.24862 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 0.0059 5 6 3.5926 -0.6642 0.0007 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4911 0.0006 8 6 1.5708 -2.9312 -1.4148 9 8 1.7384 -2.1571 -2.3334 10 7 1.1427 -4.1853 -1.6601 11 6 0.8790 -4.6135 -3.0361 12 1 0.6342 -3.7829 -3.6982 13 6 1.9516 -5.5581 -3.6036 14 6 1.1188 -6.7185 -3.0265 15 1 1.0677 -7.5888 -3.6809 16 7 1.4705 -7.0639 -1.6470 17 6 2.1535 -8.2213 -1.3838 18 1 2.4324 -8.8796 -2.1932 19 6 2.4872 -8.5483 -0.0767 20 7 2.1467 -7.7463 0.9098 21 14 3.4195 -10.1268 0.2822 22 1 4.7245 -10.1029 -0.4259 23 1 3.6512 -10.2433 1.7444 24 1 2.6232 -11.2895 -0.1864 25 6 -0.1036 -5.7920 -3.1371 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 4.4098 1.3411 0.0112 30 1 4.4777 -1.2832 0.0014 31 1 2.6163 -3.1236 0.4357 32 1 0.9293 -2.5770 0.5895 33 1 1.0090 -4.8046 -0.9255 34 1 2.0029 -5.5567 -4.6924 35 1 2.9280 -5.4432 -3.1328 36 1 1.2196 -6.4728 -0.9199 37 1 2.3796 -7.9750 1.8233 38 1 -0.7854 -5.8659 -2.2899 39 1 -0.6144 -5.8536 -4.0981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023091370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:01 Heat of formation + Delta-G solvation = 46.130202 kcal Electronic energy + Delta-G solvation = -21677.749301 eV Core-core repulsion = 18428.998155 eV Total energy + Delta-G solvation = -3248.751146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12041 -41.22441 -39.39168 -35.51351 -35.02187 -34.15175 -32.64534 -31.85480 -29.13187 -27.66213 -26.56644 -26.24553 -24.36699 -22.42056 -22.00353 -20.89050 -20.29729 -19.31178 -18.49772 -18.13091 -16.90148 -16.58611 -16.54169 -16.22343 -15.77398 -15.41131 -15.24564 -14.85486 -14.65927 -14.56227 -13.95575 -13.68766 -13.48967 -13.47435 -13.24140 -13.21381 -13.16356 -12.77359 -12.57143 -12.20564 -11.81071 -11.72326 -11.43982 -11.18016 -11.02497 -10.82987 -10.50295 -10.04390 -9.29273 -9.01427 -7.97057 -5.23381 0.96778 1.38947 1.50688 1.51099 1.56686 1.63866 2.15870 2.24327 2.56324 3.36480 3.48060 3.59020 3.66458 3.69219 3.84995 3.88620 4.01233 4.09659 4.30396 4.37423 4.41950 4.54500 4.68795 4.79200 4.82900 4.87904 4.95533 4.99422 5.05997 5.21404 5.30215 5.33370 5.52075 5.66578 5.80747 6.15241 6.27713 6.42486 7.04737 7.11051 7.34993 8.06819 8.30939 9.25604 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.004443 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.270015 B = 6300.910065 C = 7138.011866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.203 3.797 3 N -0.530 5.530 4 C -0.048 4.048 5 C -0.059 4.059 6 N -0.443 5.443 7 C 0.085 3.915 8 C 0.502 3.498 9 O -0.570 6.570 10 N -0.692 5.692 11 C 0.124 3.876 12 H 0.094 0.906 13 C -0.179 4.179 14 C 0.146 3.854 15 H 0.068 0.932 16 N -0.714 5.714 17 C -0.247 4.247 18 H 0.074 0.926 19 C -0.062 4.062 20 N -0.961 5.961 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.280 1.280 25 C -0.143 4.143 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.188 0.812 30 H 0.192 0.808 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.409 0.591 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.375 0.625 37 H 0.253 0.747 38 H 0.071 0.929 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 9.223 -2.307 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 N -0.250 5.250 4 C -0.195 4.195 5 C -0.191 4.191 6 N -0.125 5.125 7 C -0.041 4.041 8 C 0.287 3.713 9 O -0.449 6.449 10 N -0.345 5.345 11 C 0.018 3.982 12 H 0.112 0.888 13 C -0.221 4.221 14 C 0.036 3.964 15 H 0.086 0.914 16 N -0.354 5.354 17 C -0.379 4.379 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.610 5.610 21 Si 0.794 3.206 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.207 1.207 25 C -0.182 4.182 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.205 0.795 30 H 0.209 0.791 31 H 0.157 0.843 32 H 0.171 0.829 33 H 0.247 0.753 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.210 0.790 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.246 10.239 -2.948 11.470 hybrid contribution 1.189 -1.819 0.830 2.326 sum -3.058 8.421 -2.118 9.205 Atomic orbital electron populations 1.20297 0.83120 1.04365 1.04725 1.23864 0.96976 0.81165 1.03894 1.70195 1.03268 1.29298 1.22215 1.22632 0.94970 0.93469 1.08403 1.23105 0.87595 0.97212 1.11158 1.44988 1.06832 1.06463 1.54258 1.21877 1.06526 0.80897 0.94812 1.21029 0.76582 0.82020 0.91649 1.90733 1.53104 1.54061 1.47040 1.45839 1.66322 1.12576 1.09766 1.21830 0.97294 0.96251 0.82798 0.88840 1.24260 0.97913 0.98850 1.01086 1.21535 0.93760 0.94829 0.86307 0.91398 1.42284 1.66689 1.23923 1.02526 1.19573 1.27361 0.98536 0.92387 0.90847 1.25348 1.02929 1.01528 0.95698 1.69692 1.53180 1.39211 0.98963 0.85354 0.78664 0.80322 0.76217 1.21092 1.22202 1.20673 1.23749 0.96559 0.93735 1.04146 0.87890 0.89051 0.90605 0.79538 0.79127 0.84252 0.82923 0.75280 0.87936 0.94171 0.79032 0.93814 0.91027 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.04 71.23 0.71 -0.65 16 2 C 0.20 5.81 7.89 138.13 1.09 6.90 16 3 N -0.53 -17.04 11.25 -188.13 -2.12 -19.15 16 4 C -0.05 -1.38 11.87 83.52 0.99 -0.39 16 5 C -0.06 -1.59 11.58 83.09 0.96 -0.63 16 6 N -0.44 -12.08 2.24 -518.33 -1.16 -13.25 16 7 C 0.08 1.98 6.16 85.63 0.53 2.51 16 8 C 0.50 14.89 7.90 87.66 0.69 15.58 16 9 O -0.57 -21.21 16.04 -3.05 -0.05 -21.26 16 10 N -0.69 -20.25 5.12 -440.05 -2.25 -22.50 16 11 C 0.12 3.58 4.29 45.52 0.20 3.77 16 12 H 0.09 2.72 7.50 -2.39 -0.02 2.70 16 13 C -0.18 -5.70 7.70 31.21 0.24 -5.46 16 14 C 0.15 5.01 4.57 45.61 0.21 5.21 16 15 H 0.07 2.31 8.10 -2.39 -0.02 2.30 16 16 N -0.71 -31.11 5.18 -320.00 -1.66 -32.77 16 17 C -0.25 -12.44 9.97 84.03 0.84 -11.60 16 18 H 0.07 3.62 7.83 -2.92 -0.02 3.59 16 19 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 20 N -0.96 -51.91 13.06 21.65 0.28 -51.63 16 21 Si 0.96 42.86 29.55 68.60 2.03 44.89 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 C -0.14 -3.76 7.58 31.12 0.24 -3.52 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.46 7.82 -2.39 -0.02 1.44 16 29 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.15 2.58 7.91 -2.38 -0.02 2.56 16 33 H 0.41 12.31 6.16 -92.70 -0.57 11.74 16 34 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.37 16.49 5.34 -92.71 -0.50 15.99 16 37 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.40 330.90 2.24 -66.16 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: 0.00 Total: 40.52 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 7.16 Total: 8.98 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -6.91 Total: -139.30 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.40 2.24 -66.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023091370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.295 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds