Wall clock time and date at job start Mon Mar 30 2020 23:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30858 * 125.42088 * 2 1 4 4 C 1.33316 * 109.68274 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.79215 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84704 * 179.97438 * 5 4 3 7 7 O 1.21678 * 120.00145 * 0.02731 * 6 5 4 8 8 N 1.34774 * 119.99764 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47177 * 185.95206 * 9 8 6 11 11 H 1.08994 * 109.99990 * 296.00537 * 10 9 8 12 12 C 1.54322 * 109.88195 * 174.90768 * 10 9 8 13 13 C 1.55276 * 103.00791 * 218.47231 * 12 10 9 14 14 C 1.54906 * 101.52921 * 35.36496 * 13 12 10 15 15 N 1.47022 * 109.87888 * 57.10221 * 10 9 8 16 16 C 1.36937 * 125.64876 * 298.33784 * 15 10 9 17 17 H 1.08004 * 119.99843 * 331.12848 * 16 15 10 18 18 C 1.38814 * 119.99857 * 151.13956 * 16 15 10 19 19 N 1.31625 * 119.99960 * 163.50083 * 18 16 15 20 20 Si 1.86796 * 120.00202 * 343.48663 * 18 16 15 21 21 H 1.48499 * 109.46824 * 85.01761 * 20 18 16 22 22 H 1.48500 * 109.47331 * 205.01652 * 20 18 16 23 23 H 1.48495 * 109.47365 * 325.02097 * 20 18 16 24 24 N 1.34504 * 125.41396 * 180.31058 * 2 1 3 25 25 H 0.96998 * 126.47532 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.46964 * 89.97904 * 1 2 3 27 27 H 1.08995 * 109.47235 * 209.97638 * 1 2 3 28 28 H 1.08995 * 109.47209 * 329.98013 * 1 2 3 29 29 H 1.08003 * 126.10262 * 180.02562 * 4 3 2 30 30 H 0.97002 * 120.00313 * 0.02562 * 8 6 5 31 31 H 1.09003 * 109.46806 * 65.95938 * 9 8 6 32 32 H 1.08992 * 109.47723 * 305.95806 * 9 8 6 33 33 H 1.09006 * 110.72213 * 336.75753 * 12 10 9 34 34 H 1.09000 * 110.72194 * 100.03226 * 12 10 9 35 35 H 1.09004 * 110.95824 * 277.33646 * 13 12 10 36 36 H 1.09000 * 111.10132 * 153.45166 * 13 12 10 37 37 H 1.09002 * 110.36899 * 204.23708 * 14 13 12 38 38 H 1.08994 * 110.37112 * 82.01676 * 14 13 12 39 39 H 0.96996 * 119.99878 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5976 -0.6610 -0.0004 6 6 4.8028 -1.4984 -0.0013 7 8 5.9038 -0.9802 -0.0019 8 7 4.6902 -2.8414 -0.0015 9 6 5.8932 -3.6774 -0.0030 10 6 5.4932 -5.1466 -0.1525 11 1 4.9097 -5.4639 0.7117 12 6 6.7562 -6.0237 -0.2835 13 6 6.3363 -7.0862 -1.3352 14 6 5.4302 -6.2512 -2.2741 15 7 4.7064 -5.3280 -1.3811 16 6 3.5007 -4.7376 -1.6512 17 1 2.8337 -4.4774 -0.8425 18 6 3.1357 -4.4738 -2.9642 19 7 1.8790 -4.2165 -3.2589 20 14 4.4282 -4.4836 -4.3128 21 1 4.6271 -5.8730 -4.7976 22 1 3.9759 -3.6267 -5.4382 23 1 5.7090 -3.9589 -3.7749 24 7 2.2864 -1.0962 -0.0059 25 1 1.9849 -2.0181 -0.0106 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5141 29 1 4.3978 1.3721 -0.0003 30 1 3.8125 -3.2546 -0.0013 31 1 6.4315 -3.5411 0.9350 32 1 6.5350 -3.3891 -0.8354 33 1 7.5984 -5.4352 -0.6476 34 1 6.9977 -6.4968 0.6683 35 1 5.7749 -7.8958 -0.8688 36 1 7.2035 -7.4722 -1.8708 37 1 4.7285 -6.8993 -2.7992 38 1 6.0358 -5.6922 -2.9873 39 1 1.6241 -4.0317 -4.1764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027782074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:09 Heat of formation + Delta-G solvation = 17.813117 kcal Electronic energy + Delta-G solvation = -22364.260196 eV Core-core repulsion = 19114.281129 eV Total energy + Delta-G solvation = -3249.979067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.21300 -40.58206 -39.35573 -35.62895 -34.70060 -33.68777 -32.83427 -31.82622 -30.91823 -28.41960 -26.66105 -25.69090 -23.69317 -22.48278 -21.77883 -21.47444 -21.00301 -19.68850 -18.69644 -17.38814 -17.20048 -16.95714 -16.79059 -16.59150 -15.67362 -15.25636 -15.12535 -14.91722 -14.86967 -14.34879 -14.24762 -14.13731 -13.45970 -13.43307 -13.21544 -13.05505 -12.82900 -12.73607 -12.35020 -12.09748 -11.85105 -11.67327 -11.55968 -11.33585 -11.21440 -11.03413 -10.83862 -10.10170 -9.47510 -8.96106 -8.24453 -5.54478 0.26866 1.21494 1.33765 1.38367 1.74800 1.90064 2.20380 2.33438 2.37604 3.08302 3.25727 3.41055 3.82444 3.85468 3.97971 4.05648 4.17560 4.29376 4.32535 4.42969 4.61259 4.66079 4.72700 4.74531 4.79568 4.88896 5.01199 5.01430 5.08348 5.13746 5.25747 5.44558 5.47022 5.50349 5.70653 6.03109 6.24698 6.50025 6.72364 6.86234 7.12133 7.50053 8.13685 8.93192 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.006738 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.872830 B = 4154.581874 C = 5022.598886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.242 3.758 3 N -0.522 5.522 4 C 0.053 3.947 5 C -0.102 4.102 6 C 0.586 3.414 7 O -0.579 6.579 8 N -0.698 5.698 9 C 0.115 3.885 10 C 0.141 3.859 11 H 0.064 0.936 12 C -0.115 4.115 13 C -0.117 4.117 14 C 0.099 3.901 15 N -0.619 5.619 16 C -0.216 4.216 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.938 5.938 20 Si 0.926 3.074 21 H -0.276 1.276 22 H -0.321 1.321 23 H -0.284 1.284 24 N -0.538 5.538 25 H 0.431 0.569 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.188 0.812 30 H 0.408 0.592 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.008 0.992 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -1.266 8.882 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.022 4.022 3 N -0.243 5.243 4 C -0.101 4.101 5 C -0.219 4.219 6 C 0.373 3.627 7 O -0.461 6.461 8 N -0.349 5.349 9 C -0.010 4.010 10 C 0.035 3.965 11 H 0.082 0.918 12 C -0.153 4.153 13 C -0.155 4.155 14 C -0.026 4.026 15 N -0.344 5.344 16 C -0.345 4.345 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.583 5.583 20 Si 0.759 3.241 21 H -0.202 1.202 22 H -0.250 1.250 23 H -0.210 1.210 24 N -0.142 5.142 25 H 0.272 0.728 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.205 0.795 30 H 0.247 0.753 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.141 -0.110 8.751 9.009 hybrid contribution 0.284 -1.070 -1.526 1.885 sum 2.425 -1.180 7.224 7.711 Atomic orbital electron populations 1.20511 0.81208 1.06098 1.05112 1.24281 0.97503 0.80890 0.99564 1.70173 1.01990 1.29204 1.22956 1.22773 0.95338 0.91359 1.00603 1.21095 0.84471 0.96005 1.20327 1.17101 0.86900 0.82363 0.76350 1.90738 1.27128 1.74256 1.53945 1.46084 1.11735 1.04864 1.72246 1.22003 0.86528 0.91854 1.00651 1.21596 0.93308 0.91523 0.90120 0.91842 1.22591 0.95392 0.96363 1.00937 1.22694 0.99040 0.97201 0.96553 1.22063 0.94516 0.91813 0.94167 1.45018 1.20433 1.51129 1.17864 1.18330 0.91104 1.32956 0.92140 0.90575 1.25543 0.96609 0.99738 0.98951 1.69806 1.15976 1.53258 1.19297 0.86234 0.80707 0.77127 0.80082 1.20173 1.24998 1.20998 1.43296 1.05390 1.11143 1.54399 0.72813 0.88968 0.88167 0.87273 0.79542 0.75279 0.90246 0.94303 0.90922 0.87435 0.89921 0.89055 0.94294 0.97425 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.51 71.24 0.75 -0.65 16 2 C 0.24 7.25 8.12 138.19 1.12 8.37 16 3 N -0.52 -17.89 11.20 -187.39 -2.10 -19.99 16 4 C 0.05 1.92 11.66 84.10 0.98 2.90 16 5 C -0.10 -3.80 7.08 40.01 0.28 -3.52 16 6 C 0.59 23.71 7.79 86.47 0.67 24.39 16 7 O -0.58 -26.13 16.89 -4.28 -0.07 -26.20 16 8 N -0.70 -26.31 4.82 -467.00 -2.25 -28.55 16 9 C 0.12 4.01 5.26 86.38 0.45 4.46 16 10 C 0.14 4.54 3.41 45.34 0.15 4.70 16 11 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 12 C -0.11 -2.82 6.48 31.82 0.21 -2.62 16 13 C -0.12 -3.09 7.10 32.03 0.23 -2.87 16 14 C 0.10 3.81 4.79 86.85 0.42 4.23 16 15 N -0.62 -25.54 2.81 -668.25 -1.88 -27.42 16 16 C -0.22 -10.43 8.44 84.03 0.71 -9.72 16 17 H 0.08 3.70 6.77 -2.91 -0.02 3.68 16 18 C -0.01 -0.61 5.47 84.86 0.46 -0.15 16 19 N -0.94 -52.77 13.97 21.65 0.30 -52.46 16 20 Si 0.93 46.31 24.37 68.60 1.67 47.98 16 21 H -0.28 -13.11 6.87 99.48 0.68 -12.43 16 22 H -0.32 -16.80 7.11 99.48 0.71 -16.09 16 23 H -0.28 -14.47 6.65 99.48 0.66 -13.81 16 24 N -0.54 -17.35 6.07 -176.11 -1.07 -18.42 16 25 H 0.43 13.02 8.32 -92.71 -0.77 12.25 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.19 6.14 8.06 -2.91 -0.02 6.12 16 30 H 0.41 15.21 4.82 -92.71 -0.45 14.76 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.04 1.55 8.05 -2.39 -0.02 1.54 16 33 H 0.07 1.77 7.80 -2.38 -0.02 1.75 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.62 7.46 -2.39 -0.02 1.60 16 38 H 0.01 0.34 5.23 -2.39 -0.01 0.33 16 39 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -67.83 316.80 0.84 -66.99 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.20 Total: 28.57 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 6.44 Total: 29.52 kcal Atomic # 7 Polarization: -139.86 SS G_CDS: -7.00 Total: -146.85 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.07 Total: -26.20 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.67 Total: 47.98 kcal Total: -67.83 0.84 -66.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027782074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.805 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds