Wall clock time and date at job start Mon Mar 30 2020 23:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30854 * 125.41751 * 2 1 4 4 C 1.33313 * 109.68959 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78331 * 359.97438 * 4 3 2 6 6 C 1.46769 * 126.84590 * 180.02562 * 5 4 3 7 7 O 1.21680 * 119.99771 * 0.02799 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00044 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47171 * 185.08699 * 9 8 6 11 11 H 1.09001 * 109.87655 * 303.56457 * 10 9 8 12 12 C 1.54326 * 109.87875 * 64.57450 * 10 9 8 13 13 C 1.55157 * 102.94402 * 141.60853 * 12 10 9 14 14 C 1.54911 * 101.57905 * 324.50270 * 13 12 10 15 15 N 1.47020 * 109.88203 * 182.38161 * 10 9 8 16 16 C 1.36936 * 125.65196 * 61.61175 * 15 10 9 17 17 H 1.08001 * 119.99546 * 13.60038 * 16 15 10 18 18 C 1.38809 * 120.00351 * 193.60297 * 16 15 10 19 19 N 1.31626 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00218 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47256 * 119.99762 * 20 18 16 23 23 H 1.48500 * 109.47198 * 240.00195 * 20 18 16 24 24 N 1.34489 * 125.42205 * 180.31688 * 2 1 3 25 25 H 0.97010 * 126.47160 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.47215 * 90.02704 * 1 2 3 27 27 H 1.09002 * 109.46911 * 210.02873 * 1 2 3 28 28 H 1.09001 * 109.47319 * 330.02465 * 1 2 3 29 29 H 1.07995 * 126.11346 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99706 * 359.97438 * 8 6 5 31 31 H 1.09006 * 109.47108 * 65.09089 * 9 8 6 32 32 H 1.08999 * 109.47523 * 305.09305 * 9 8 6 33 33 H 1.08998 * 110.72060 * 259.97476 * 12 10 9 34 34 H 1.09005 * 110.72244 * 23.24990 * 12 10 9 35 35 H 1.09003 * 110.99947 * 82.56801 * 13 12 10 36 36 H 1.08996 * 111.00769 * 206.42617 * 13 12 10 37 37 H 1.09003 * 110.36391 * 278.16714 * 14 13 12 38 38 H 1.09005 * 110.36777 * 155.85235 * 14 13 12 39 39 H 0.96998 * 119.99756 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6607 -0.0004 6 6 4.8029 -1.4981 -0.0003 7 8 5.9038 -0.9798 0.0001 8 7 4.6904 -2.8412 -0.0006 9 6 5.8935 -3.6770 0.0001 10 6 5.4926 -5.1480 -0.1284 11 1 4.8056 -5.4163 0.6742 12 6 4.8219 -5.3916 -1.4967 13 6 5.3649 -6.7860 -1.9067 14 6 6.8069 -6.7361 -1.3430 15 7 6.6899 -5.9993 -0.0715 16 6 7.5538 -6.0920 0.9870 17 1 7.2742 -5.6886 1.9490 18 6 8.7888 -6.7043 0.8235 19 7 9.1293 -7.1963 -0.3489 20 14 9.9668 -6.8314 2.2675 21 1 9.3508 -6.2063 3.4654 22 1 10.2546 -8.2611 2.5473 23 1 11.2319 -6.1271 1.9377 24 7 2.2865 -1.0959 -0.0061 25 1 1.9850 -2.0180 -0.0115 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.3977 1.3723 -0.0011 30 1 3.8128 -3.2543 -0.0005 31 1 6.4383 -3.5290 0.9326 32 1 6.5296 -3.3991 -0.8403 33 1 3.7368 -5.4147 -1.3956 34 1 5.1271 -4.6321 -2.2165 35 1 4.7890 -7.5832 -1.4365 36 1 5.3728 -6.8989 -2.9907 37 1 7.4647 -6.2043 -2.0304 38 1 7.1794 -7.7448 -1.1641 39 1 9.9921 -7.6245 -0.4631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027782075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:12 Heat of formation + Delta-G solvation = 38.621674 kcal Electronic energy + Delta-G solvation = -21379.474081 eV Core-core repulsion = 18130.397341 eV Total energy + Delta-G solvation = -3249.076740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37396 -39.25376 -37.64864 -34.49273 -32.90407 -32.51096 -32.10530 -29.78841 -28.90120 -27.46588 -25.04147 -24.14212 -22.53798 -21.04702 -20.53759 -20.20230 -19.69694 -18.56873 -16.81901 -16.06538 -15.89783 -15.84548 -14.99354 -14.72725 -14.40836 -14.06925 -13.91355 -13.66610 -13.40954 -13.24414 -12.84882 -12.78215 -12.15857 -11.97133 -11.83768 -11.40692 -10.99841 -10.84812 -10.54455 -10.37678 -10.34442 -10.17077 -10.04439 -9.94376 -9.85178 -9.73610 -8.92140 -8.66079 -8.55536 -6.91742 -5.81884 -3.19160 1.19536 2.63060 2.66882 3.26505 3.37180 3.39171 3.43595 3.45141 4.10049 4.43876 4.61883 4.86711 5.06363 5.11262 5.24133 5.30135 5.32451 5.42942 5.52150 5.54503 5.62959 5.71631 5.95207 6.03819 6.13828 6.36710 6.38410 6.45055 6.48883 6.59114 6.70424 6.93629 6.97316 7.45826 7.52403 7.55733 7.73907 7.76017 8.19032 8.27435 9.11550 9.71995 10.38150 11.29714 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.003875 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.080878 B = 7224.966639 C = 7909.490917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.231 3.769 3 N -0.497 5.497 4 C 0.065 3.935 5 C -0.082 4.082 6 C 0.587 3.413 7 O -0.525 6.525 8 N -0.720 5.720 9 C 0.108 3.892 10 C 0.152 3.848 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.236 4.236 17 H 0.077 0.923 18 C -0.001 4.001 19 N -0.915 5.915 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.288 1.288 24 N -0.552 5.552 25 H 0.421 0.579 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.184 0.816 30 H 0.389 0.611 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.033 7.981 -1.573 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.217 5.217 4 C -0.088 4.088 5 C -0.198 4.198 6 C 0.372 3.628 7 O -0.400 6.400 8 N -0.371 5.371 9 C -0.016 4.016 10 C 0.044 3.956 11 H 0.054 0.946 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.046 3.954 15 N -0.312 5.312 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.198 4.198 19 N -0.561 5.561 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.215 1.215 24 N -0.158 5.158 25 H 0.259 0.741 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.201 0.799 30 H 0.221 0.779 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.204 9.020 -1.528 19.485 hybrid contribution 0.508 -1.517 0.691 1.742 sum -16.696 7.504 -0.837 18.324 Atomic orbital electron populations 1.20291 0.84320 1.04506 1.03996 1.23441 0.95847 0.81637 1.02326 1.70181 1.02205 1.28246 1.21057 1.22651 0.94653 0.91381 1.00102 1.21380 0.83723 0.96182 1.18469 1.16896 0.86813 0.81828 0.77295 1.90873 1.25793 1.73186 1.50192 1.46056 1.10721 1.05537 1.74773 1.22339 0.85470 0.90913 1.02909 1.21122 0.90987 0.88465 0.95075 0.94602 1.22616 0.98271 0.98420 0.97182 1.23009 1.00490 0.95721 0.99487 1.21492 0.89701 0.98137 0.86035 1.44499 1.26524 1.44949 1.15267 1.19035 0.94534 1.34269 0.88582 0.90533 1.24912 0.97048 1.00882 0.96965 1.69946 1.21774 1.42650 1.21697 0.86057 0.81100 0.77313 0.81364 1.20353 1.21671 1.21516 1.43248 1.06181 1.10184 1.56137 0.74061 0.89654 0.90426 0.88722 0.79902 0.77901 0.91172 0.91186 0.92612 0.91780 0.92275 0.92279 0.95608 0.90647 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.23 2.23 8.12 -155.62 -1.26 0.97 16 3 N -0.50 -6.34 11.20 -10.59 -0.12 -6.46 16 4 C 0.07 0.88 11.66 -17.48 -0.20 0.68 16 5 C -0.08 -1.06 7.08 -82.14 -0.58 -1.65 16 6 C 0.59 9.32 7.79 -12.81 -0.10 9.22 16 7 O -0.52 -10.54 16.90 5.21 0.09 -10.45 16 8 N -0.72 -10.39 5.32 -61.59 -0.33 -10.72 16 9 C 0.11 2.03 5.07 -4.04 -0.02 2.01 16 10 C 0.15 2.88 3.22 -66.95 -0.22 2.66 16 11 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 12 C -0.13 -2.00 6.10 -24.90 -0.15 -2.16 16 13 C -0.15 -2.62 7.09 -24.58 -0.17 -2.79 16 14 C 0.17 3.99 5.43 -2.53 -0.01 3.97 16 15 N -0.59 -14.25 3.13 -162.57 -0.51 -14.76 16 16 C -0.24 -6.35 9.77 -15.06 -0.15 -6.50 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 19 N -0.91 -26.28 10.53 55.49 0.58 -25.70 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 N -0.55 -5.11 6.07 -7.02 -0.04 -5.15 16 25 H 0.42 2.48 8.32 -40.82 -0.34 2.14 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.39 4.22 7.58 -40.82 -0.31 3.91 16 31 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 32 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.08 1.96 6.85 -51.93 -0.36 1.61 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -33.59 327.15 -8.59 -42.19 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.59 Total: 2.95 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.59 Total: 6.31 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.41 Total: -62.79 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.59 -8.59 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027782075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.808 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds