Wall clock time and date at job start Mon Mar 30 2020 23:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30854 * 125.41751 * 2 1 4 4 C 1.33313 * 109.68959 * 180.02562 * 3 2 1 5 5 C 1.36661 * 107.78331 * 359.97438 * 4 3 2 6 6 C 1.46769 * 126.84590 * 180.02562 * 5 4 3 7 7 O 1.21680 * 119.99771 * 0.02799 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00044 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47171 * 185.08699 * 9 8 6 11 11 H 1.09001 * 109.87655 * 303.56457 * 10 9 8 12 12 C 1.54326 * 109.87875 * 64.57450 * 10 9 8 13 13 C 1.55157 * 102.94402 * 141.60853 * 12 10 9 14 14 C 1.54911 * 101.57905 * 324.50270 * 13 12 10 15 15 N 1.47020 * 109.88203 * 182.38161 * 10 9 8 16 16 C 1.36936 * 125.65196 * 61.61175 * 15 10 9 17 17 H 1.08001 * 119.99546 * 13.60038 * 16 15 10 18 18 C 1.38809 * 120.00351 * 193.60297 * 16 15 10 19 19 N 1.31626 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00218 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47091 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47256 * 119.99762 * 20 18 16 23 23 H 1.48500 * 109.47198 * 240.00195 * 20 18 16 24 24 N 1.34489 * 125.42205 * 180.31688 * 2 1 3 25 25 H 0.97010 * 126.47160 * 0.02562 * 24 2 1 26 26 H 1.09000 * 109.47215 * 90.02704 * 1 2 3 27 27 H 1.09002 * 109.46911 * 210.02873 * 1 2 3 28 28 H 1.09001 * 109.47319 * 330.02465 * 1 2 3 29 29 H 1.07995 * 126.11346 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99706 * 359.97438 * 8 6 5 31 31 H 1.09006 * 109.47108 * 65.09089 * 9 8 6 32 32 H 1.08999 * 109.47523 * 305.09305 * 9 8 6 33 33 H 1.08998 * 110.72060 * 259.97476 * 12 10 9 34 34 H 1.09005 * 110.72244 * 23.24990 * 12 10 9 35 35 H 1.09003 * 110.99947 * 82.56801 * 13 12 10 36 36 H 1.08996 * 111.00769 * 206.42617 * 13 12 10 37 37 H 1.09003 * 110.36391 * 278.16714 * 14 13 12 38 38 H 1.09005 * 110.36777 * 155.85235 * 14 13 12 39 39 H 0.96998 * 119.99756 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6607 -0.0004 6 6 4.8029 -1.4981 -0.0003 7 8 5.9038 -0.9798 0.0001 8 7 4.6904 -2.8412 -0.0006 9 6 5.8935 -3.6770 0.0001 10 6 5.4926 -5.1480 -0.1284 11 1 4.8056 -5.4163 0.6742 12 6 4.8219 -5.3916 -1.4967 13 6 5.3649 -6.7860 -1.9067 14 6 6.8069 -6.7361 -1.3430 15 7 6.6899 -5.9993 -0.0715 16 6 7.5538 -6.0920 0.9870 17 1 7.2742 -5.6886 1.9490 18 6 8.7888 -6.7043 0.8235 19 7 9.1293 -7.1963 -0.3489 20 14 9.9668 -6.8314 2.2675 21 1 9.3508 -6.2063 3.4654 22 1 10.2546 -8.2611 2.5473 23 1 11.2319 -6.1271 1.9377 24 7 2.2865 -1.0959 -0.0061 25 1 1.9850 -2.0180 -0.0115 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 4.3977 1.3723 -0.0011 30 1 3.8128 -3.2543 -0.0005 31 1 6.4383 -3.5290 0.9326 32 1 6.5296 -3.3991 -0.8403 33 1 3.7368 -5.4147 -1.3956 34 1 5.1271 -4.6321 -2.2165 35 1 4.7890 -7.5832 -1.4365 36 1 5.3728 -6.8989 -2.9907 37 1 7.4647 -6.2043 -2.0304 38 1 7.1794 -7.7448 -1.1641 39 1 9.9921 -7.6245 -0.4631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027782075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:11 Heat of formation + Delta-G solvation = 14.033306 kcal Electronic energy + Delta-G solvation = -21380.540312 eV Core-core repulsion = 18130.397341 eV Total energy + Delta-G solvation = -3250.142972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.26804 -40.61509 -39.24131 -35.95241 -34.47904 -33.74493 -32.85119 -31.46283 -30.47259 -28.36174 -26.75954 -25.77069 -23.67737 -22.09839 -21.90926 -21.52630 -21.11072 -19.76696 -18.63910 -17.42111 -17.07453 -16.86447 -16.68423 -16.08757 -15.86226 -15.65831 -14.99174 -14.88538 -14.65060 -14.26681 -13.99389 -13.68731 -13.50227 -13.36772 -13.19315 -13.02901 -12.88642 -12.71292 -12.00176 -11.91985 -11.77538 -11.61117 -11.50783 -11.43536 -11.24085 -11.12130 -10.71409 -10.29038 -9.54109 -8.89719 -7.90450 -5.28287 0.19806 1.42798 1.45425 1.54239 1.74499 1.77093 2.06631 2.23317 2.47752 3.29147 3.39435 3.66615 3.81325 3.91102 3.94347 4.09497 4.23644 4.29751 4.40270 4.50486 4.61081 4.69575 4.79691 4.85441 4.92120 4.96285 5.10294 5.13979 5.15556 5.26283 5.44678 5.45455 5.51984 5.64760 5.76635 6.20546 6.27019 6.41186 6.86564 7.04482 7.07270 7.73833 8.38742 9.20146 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.003875 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.080878 B = 7224.966639 C = 7909.490917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.251 3.749 3 N -0.529 5.529 4 C 0.056 3.944 5 C -0.096 4.096 6 C 0.590 3.410 7 O -0.576 6.576 8 N -0.701 5.701 9 C 0.128 3.872 10 C 0.149 3.851 11 H 0.055 0.945 12 C -0.114 4.114 13 C -0.133 4.133 14 C 0.171 3.829 15 N -0.611 5.611 16 C -0.240 4.240 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.296 1.296 24 N -0.536 5.536 25 H 0.439 0.561 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.411 0.589 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.082 0.918 37 H -0.010 1.010 38 H 0.038 0.962 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.003 8.037 -1.372 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.013 4.013 3 N -0.250 5.250 4 C -0.098 4.098 5 C -0.213 4.213 6 C 0.377 3.623 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.002 3.998 10 C 0.041 3.959 11 H 0.073 0.927 12 C -0.151 4.151 13 C -0.171 4.171 14 C 0.046 3.954 15 N -0.335 5.335 16 C -0.369 4.369 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.800 3.200 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.223 1.223 24 N -0.143 5.143 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.008 0.992 38 H 0.057 0.943 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.266 9.050 -1.319 23.149 hybrid contribution 1.612 -1.455 0.632 2.262 sum -19.654 7.594 -0.687 21.081 Atomic orbital electron populations 1.20571 0.80649 1.06183 1.05660 1.24352 0.97499 0.80767 0.98687 1.70216 1.01963 1.29934 1.22911 1.22757 0.95313 0.91782 0.99926 1.20750 0.84216 0.95458 1.20846 1.17193 0.87063 0.82020 0.76027 1.90848 1.28072 1.74109 1.52502 1.45653 1.10472 1.04860 1.74263 1.21792 0.86400 0.91670 0.99948 1.21349 0.89380 0.87211 0.97941 0.92716 1.22619 1.00945 0.96920 0.94633 1.22869 0.96141 0.97403 1.00730 1.21305 0.93068 0.95435 0.85550 1.44763 1.27441 1.46563 1.14759 1.19347 0.95057 1.32868 0.89617 0.90405 1.25669 0.98813 1.01591 0.99265 1.70147 1.21736 1.44007 1.23427 0.85121 0.78748 0.77069 0.79089 1.19121 1.21493 1.22310 1.43110 1.04460 1.11294 1.55406 0.71864 0.87809 0.87438 0.88373 0.80484 0.75241 0.94407 0.94194 0.87374 0.91828 0.90925 0.89980 0.99220 0.94312 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.51 71.24 0.75 0.35 16 2 C 0.25 4.01 8.12 138.20 1.12 5.13 16 3 N -0.53 -12.63 11.20 -187.41 -2.10 -14.73 16 4 C 0.06 1.49 11.66 84.10 0.98 2.47 16 5 C -0.10 -2.38 7.08 40.01 0.28 -2.10 16 6 C 0.59 18.51 7.79 86.47 0.67 19.19 16 7 O -0.58 -23.93 16.90 -4.29 -0.07 -24.00 16 8 N -0.70 -19.11 5.32 -467.00 -2.49 -21.60 16 9 C 0.13 4.80 5.07 86.38 0.44 5.23 16 10 C 0.15 5.38 3.22 45.34 0.15 5.53 16 11 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.11 -3.17 6.10 31.78 0.19 -2.98 16 13 C -0.13 -4.36 7.09 31.99 0.23 -4.14 16 14 C 0.17 8.16 5.43 86.86 0.47 8.63 16 15 N -0.61 -29.93 3.13 -668.25 -2.09 -32.02 16 16 C -0.24 -13.17 9.77 84.03 0.82 -12.35 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.06 -3.39 5.47 84.86 0.46 -2.92 16 19 N -0.95 -56.67 10.53 21.65 0.23 -56.45 16 20 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 N -0.54 -8.11 6.07 -176.12 -1.07 -9.18 16 25 H 0.44 3.13 8.32 -92.70 -0.77 2.36 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.41 7.42 7.58 -92.71 -0.70 6.72 16 31 H 0.04 1.65 7.92 -2.38 -0.02 1.63 16 32 H 0.04 1.73 8.08 -2.39 -0.02 1.72 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.82 7.81 -2.38 -0.02 1.81 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 16 38 H 0.04 2.09 6.85 -2.38 -0.02 2.08 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -78.68 327.15 0.61 -78.07 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -0.40 Total: 9.67 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 6.57 Total: 22.04 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -7.52 Total: -133.98 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.07 Total: -24.00 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -78.68 0.61 -78.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027782075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.106 kcal (2) G-P(sol) polarization free energy of solvation -78.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds