Wall clock time and date at job start Mon Mar 30 2020 23:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30852 * 125.42217 * 2 1 4 4 C 1.33323 * 109.68860 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78451 * 359.97438 * 4 3 2 6 6 C 1.46760 * 126.84587 * 180.02562 * 5 4 3 7 7 O 1.21688 * 119.99867 * 0.02682 * 6 5 4 8 8 N 1.34774 * 120.00175 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99832 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47114 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.64142 * 305.70316 * 10 9 8 12 12 C 1.55150 * 110.72108 * 182.55796 * 10 9 8 13 13 C 1.54913 * 101.58162 * 206.13560 * 12 10 9 14 14 N 1.47423 * 104.83095 * 37.01013 * 13 12 10 15 15 C 1.36937 * 125.64707 * 155.91227 * 14 13 12 16 16 H 1.08005 * 119.99757 * 342.04054 * 15 14 13 17 17 C 1.38809 * 120.00337 * 162.05170 * 15 14 13 18 18 N 1.31618 * 120.00566 * 156.23433 * 17 15 14 19 19 Si 1.86803 * 119.99486 * 336.24028 * 17 15 14 20 20 H 1.48490 * 109.47497 * 84.67106 * 19 17 15 21 21 H 1.48508 * 109.46950 * 204.66763 * 19 17 15 22 22 H 1.48497 * 109.47085 * 324.66439 * 19 17 15 23 23 C 1.47320 * 108.73599 * 335.71687 * 14 13 12 24 24 N 1.34499 * 125.41586 * 180.31042 * 2 1 3 25 25 H 0.97004 * 126.47608 * 0.02659 * 24 2 1 26 26 H 1.09005 * 109.46942 * 89.97515 * 1 2 3 27 27 H 1.08999 * 109.47069 * 209.97277 * 1 2 3 28 28 H 1.08999 * 109.47018 * 329.97745 * 1 2 3 29 29 H 1.07994 * 126.10638 * 180.02562 * 4 3 2 30 30 H 0.96997 * 119.99866 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.47463 * 299.99805 * 9 8 6 32 32 H 1.09002 * 109.47502 * 60.00171 * 9 8 6 33 33 H 1.09007 * 111.00630 * 324.20643 * 12 10 9 34 34 H 1.08998 * 111.00773 * 88.02527 * 12 10 9 35 35 H 1.09006 * 110.36816 * 155.84743 * 13 12 10 36 36 H 1.09004 * 110.36215 * 278.06136 * 13 12 10 37 37 H 0.96998 * 120.00410 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.05796 * 241.87603 * 23 14 13 39 39 H 1.08992 * 109.85181 * 120.61349 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0006 5 6 3.5976 -0.6610 0.0015 6 6 4.8028 -1.4984 0.0029 7 8 5.9038 -0.9802 0.0038 8 7 4.6902 -2.8415 0.0032 9 6 5.8933 -3.6774 0.0052 10 6 5.4890 -5.1531 0.0058 11 1 4.8124 -5.3658 0.8335 12 6 6.7421 -6.0655 0.0726 13 6 6.2217 -7.3585 -0.6034 14 7 5.3346 -6.8890 -1.6833 15 6 5.0158 -7.5900 -2.8156 16 1 5.6268 -8.4256 -3.1234 17 6 3.9074 -7.2264 -3.5680 18 7 3.8443 -7.5450 -4.8434 19 14 2.5052 -6.2846 -2.7701 20 1 2.8170 -4.8328 -2.7767 21 1 1.2520 -6.5251 -3.5297 22 1 2.3318 -6.7474 -1.3698 23 6 4.8438 -5.5429 -1.3408 24 7 2.2864 -1.0961 -0.0059 25 1 1.9849 -2.0181 -0.0113 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.3978 1.3720 0.0011 30 1 3.8126 -3.2545 0.0029 31 1 6.4861 -3.4631 -0.8840 32 1 6.4837 -3.4625 0.8959 33 1 7.5693 -5.6352 -0.4920 34 1 7.0334 -6.2542 1.1058 35 1 7.0521 -7.9312 -1.0167 36 1 5.6641 -7.9627 0.1123 37 1 3.0696 -7.2912 -5.3691 38 1 3.7583 -5.5546 -1.2421 39 1 5.1403 -4.8333 -2.1131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028442089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:15 Heat of formation + Delta-G solvation = 45.620642 kcal Electronic energy + Delta-G solvation = -21514.737567 eV Core-core repulsion = 18265.964325 eV Total energy + Delta-G solvation = -3248.773242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44423 -39.54638 -38.02993 -34.92648 -33.09590 -32.57133 -32.13220 -30.52868 -28.89545 -27.70243 -25.82908 -23.98208 -22.67924 -21.15938 -20.78978 -20.36991 -20.14485 -18.68485 -17.04961 -16.41398 -16.18402 -15.97132 -15.82444 -14.89408 -14.58217 -14.18358 -14.01644 -13.63757 -13.53960 -13.43261 -13.04605 -12.81469 -12.77505 -12.58610 -12.06173 -11.68983 -11.41786 -11.06958 -10.83709 -10.69183 -10.63549 -10.43470 -10.33623 -10.07788 -9.97591 -9.46138 -9.23625 -8.73291 -8.68303 -7.16318 -6.03750 -3.32089 1.08782 2.56664 2.59155 3.00550 3.17143 3.21836 3.30294 3.37044 4.06099 4.43573 4.53600 4.65422 4.80886 4.92220 4.95324 5.02272 5.12161 5.14599 5.27814 5.35935 5.50723 5.51762 5.57524 5.70664 5.77754 5.92035 5.98260 6.17687 6.19150 6.31148 6.35553 6.50045 6.62513 6.70176 6.89274 7.26807 7.61860 7.67158 7.99678 8.22846 8.74634 9.59905 10.08621 11.12997 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.005160 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.292928 B = 5425.100127 C = 6626.387189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.238 3.762 3 N -0.496 5.496 4 C 0.072 3.928 5 C -0.089 4.089 6 C 0.595 3.405 7 O -0.527 6.527 8 N -0.726 5.726 9 C 0.133 3.867 10 C -0.117 4.117 11 H 0.079 0.921 12 C -0.121 4.121 13 C 0.132 3.868 14 N -0.610 5.610 15 C -0.243 4.243 16 H 0.094 0.906 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.886 3.114 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.281 1.281 23 C 0.125 3.875 24 N -0.552 5.552 25 H 0.422 0.578 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.185 0.815 30 H 0.395 0.605 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.021 0.979 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 11.472 13.255 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 N -0.217 5.217 4 C -0.082 4.082 5 C -0.205 4.205 6 C 0.381 3.619 7 O -0.403 6.403 8 N -0.376 5.376 9 C 0.009 3.991 10 C -0.137 4.137 11 H 0.098 0.902 12 C -0.160 4.160 13 C 0.007 3.993 14 N -0.337 5.337 15 C -0.370 4.370 16 H 0.112 0.888 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.718 3.282 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.208 1.208 23 C 0.000 4.000 24 N -0.158 5.158 25 H 0.261 0.739 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.202 0.798 30 H 0.228 0.772 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.683 12.568 13.001 18.454 hybrid contribution -1.283 -1.096 0.276 1.709 sum -4.965 11.472 13.278 18.236 Atomic orbital electron populations 1.20332 0.84172 1.04576 1.04283 1.23492 0.95948 0.81509 1.01582 1.70205 1.02125 1.28154 1.21191 1.22658 0.94756 0.91167 0.99632 1.21214 0.83686 0.96123 1.19489 1.16822 0.87011 0.81443 0.76641 1.90850 1.25772 1.73223 1.50429 1.45962 1.10534 1.05776 1.75342 1.21491 0.86311 0.88421 1.02828 1.22475 0.99036 0.93007 0.99144 0.90218 1.22732 0.96309 0.96446 1.00478 1.21624 0.93689 0.93916 0.90094 1.44857 1.55149 1.13006 1.20656 1.18695 1.08110 1.13305 0.96869 0.88826 1.24961 0.98174 0.99086 0.95544 1.69853 1.30203 1.49753 1.05011 0.86876 0.83327 0.79222 0.78729 1.21652 1.23176 1.20780 1.21756 0.95953 0.88870 0.93459 1.43300 1.06202 1.10376 1.55906 0.73939 0.89421 0.90316 0.88580 0.79792 0.77221 0.90514 0.90891 0.90746 0.91114 0.93027 0.95733 0.92667 0.96163 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.24 2.49 8.12 -155.61 -1.26 1.23 16 3 N -0.50 -6.44 11.20 -10.58 -0.12 -6.56 16 4 C 0.07 0.94 11.66 -17.47 -0.20 0.74 16 5 C -0.09 -1.16 7.08 -82.14 -0.58 -1.74 16 6 C 0.59 8.67 7.79 -12.82 -0.10 8.57 16 7 O -0.53 -9.18 16.90 5.20 0.09 -9.09 16 8 N -0.73 -9.65 5.43 -61.59 -0.33 -9.99 16 9 C 0.13 1.83 5.00 -4.04 -0.02 1.81 16 10 C -0.12 -1.76 2.98 -88.79 -0.26 -2.02 16 11 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.12 -1.75 6.54 -24.58 -0.16 -1.91 16 13 C 0.13 2.45 7.23 -2.53 -0.02 2.43 16 14 N -0.61 -14.28 3.22 -169.83 -0.55 -14.83 16 15 C -0.24 -6.78 10.56 -15.06 -0.16 -6.94 16 16 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 17 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 18 N -0.90 -27.61 13.97 55.49 0.78 -26.84 16 19 Si 0.89 21.77 24.38 -169.99 -4.15 17.63 16 20 H -0.29 -6.73 6.83 56.52 0.39 -6.34 16 21 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 22 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 23 C 0.12 2.54 4.55 -2.90 -0.01 2.53 16 24 N -0.55 -5.72 6.07 -7.02 -0.04 -5.76 16 25 H 0.42 3.29 8.32 -40.82 -0.34 2.96 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.39 4.61 7.65 -40.82 -0.31 4.29 16 31 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.06 8.05 -51.92 -0.42 0.65 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.02 0.45 3.55 -51.93 -0.18 0.26 16 39 H 0.04 0.95 7.73 -51.93 -0.40 0.54 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -34.84 322.28 -7.43 -42.27 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.46 Total: 3.19 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.50 Total: 5.12 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.27 Total: -63.97 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.84 -7.43 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028442089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.892 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds