Wall clock time and date at job start Mon Mar 30 2020 23:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30852 * 125.42217 * 2 1 4 4 C 1.33323 * 109.68860 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78451 * 359.97438 * 4 3 2 6 6 C 1.46760 * 126.84587 * 180.02562 * 5 4 3 7 7 O 1.21688 * 119.99867 * 0.02682 * 6 5 4 8 8 N 1.34774 * 120.00175 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99832 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47114 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.64142 * 305.70316 * 10 9 8 12 12 C 1.55150 * 110.72108 * 182.55796 * 10 9 8 13 13 C 1.54913 * 101.58162 * 206.13560 * 12 10 9 14 14 N 1.47423 * 104.83095 * 37.01013 * 13 12 10 15 15 C 1.36937 * 125.64707 * 155.91227 * 14 13 12 16 16 H 1.08005 * 119.99757 * 342.04054 * 15 14 13 17 17 C 1.38809 * 120.00337 * 162.05170 * 15 14 13 18 18 N 1.31618 * 120.00566 * 156.23433 * 17 15 14 19 19 Si 1.86803 * 119.99486 * 336.24028 * 17 15 14 20 20 H 1.48490 * 109.47497 * 84.67106 * 19 17 15 21 21 H 1.48508 * 109.46950 * 204.66763 * 19 17 15 22 22 H 1.48497 * 109.47085 * 324.66439 * 19 17 15 23 23 C 1.47320 * 108.73599 * 335.71687 * 14 13 12 24 24 N 1.34499 * 125.41586 * 180.31042 * 2 1 3 25 25 H 0.97004 * 126.47608 * 0.02659 * 24 2 1 26 26 H 1.09005 * 109.46942 * 89.97515 * 1 2 3 27 27 H 1.08999 * 109.47069 * 209.97277 * 1 2 3 28 28 H 1.08999 * 109.47018 * 329.97745 * 1 2 3 29 29 H 1.07994 * 126.10638 * 180.02562 * 4 3 2 30 30 H 0.96997 * 119.99866 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.47463 * 299.99805 * 9 8 6 32 32 H 1.09002 * 109.47502 * 60.00171 * 9 8 6 33 33 H 1.09007 * 111.00630 * 324.20643 * 12 10 9 34 34 H 1.08998 * 111.00773 * 88.02527 * 12 10 9 35 35 H 1.09006 * 110.36816 * 155.84743 * 13 12 10 36 36 H 1.09004 * 110.36215 * 278.06136 * 13 12 10 37 37 H 0.96998 * 120.00410 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.05796 * 241.87603 * 23 14 13 39 39 H 1.08992 * 109.85181 * 120.61349 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0006 5 6 3.5976 -0.6610 0.0015 6 6 4.8028 -1.4984 0.0029 7 8 5.9038 -0.9802 0.0038 8 7 4.6902 -2.8415 0.0032 9 6 5.8933 -3.6774 0.0052 10 6 5.4890 -5.1531 0.0058 11 1 4.8124 -5.3658 0.8335 12 6 6.7421 -6.0655 0.0726 13 6 6.2217 -7.3585 -0.6034 14 7 5.3346 -6.8890 -1.6833 15 6 5.0158 -7.5900 -2.8156 16 1 5.6268 -8.4256 -3.1234 17 6 3.9074 -7.2264 -3.5680 18 7 3.8443 -7.5450 -4.8434 19 14 2.5052 -6.2846 -2.7701 20 1 2.8170 -4.8328 -2.7767 21 1 1.2520 -6.5251 -3.5297 22 1 2.3318 -6.7474 -1.3698 23 6 4.8438 -5.5429 -1.3408 24 7 2.2864 -1.0961 -0.0059 25 1 1.9849 -2.0181 -0.0113 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.3978 1.3720 0.0011 30 1 3.8126 -3.2545 0.0029 31 1 6.4861 -3.4631 -0.8840 32 1 6.4837 -3.4625 0.8959 33 1 7.5693 -5.6352 -0.4920 34 1 7.0334 -6.2542 1.1058 35 1 7.0521 -7.9312 -1.0167 36 1 5.6641 -7.9627 0.1123 37 1 3.0696 -7.2912 -5.3691 38 1 3.7583 -5.5546 -1.2421 39 1 5.1403 -4.8333 -2.1131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028442089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:14 Heat of formation + Delta-G solvation = 18.899899 kcal Electronic energy + Delta-G solvation = -21515.896265 eV Core-core repulsion = 18265.964325 eV Total energy + Delta-G solvation = -3249.931940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.32118 -40.70306 -39.45570 -36.22062 -34.61784 -33.81160 -32.95582 -32.11090 -30.29485 -28.61184 -27.31377 -25.53720 -23.76447 -22.26711 -21.91312 -21.78610 -21.22926 -19.68685 -19.00749 -17.86029 -17.23201 -17.08225 -16.88562 -16.26938 -15.79937 -15.49692 -15.15520 -15.07891 -14.95439 -14.36085 -14.31533 -14.24419 -13.58999 -13.41601 -13.27754 -13.26219 -13.04551 -12.69168 -12.43133 -12.17073 -11.87833 -11.66316 -11.61737 -11.31273 -11.26607 -11.13824 -10.79686 -10.35304 -9.59125 -9.10970 -8.21969 -5.47066 0.14265 1.19649 1.32443 1.44354 1.67509 1.73869 2.00635 2.18784 2.37836 2.97456 3.26965 3.33882 3.61000 3.72420 3.77472 3.82880 4.01576 4.24451 4.31928 4.42827 4.50223 4.54070 4.61301 4.71174 4.74781 4.79980 4.82558 4.99906 5.07409 5.07677 5.11697 5.22625 5.41004 5.42108 5.65378 6.06376 6.13999 6.27992 6.72913 6.79794 6.92861 7.50596 8.06848 8.98458 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.005160 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.292928 B = 5425.100127 C = 6626.387189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.249 3.751 3 N -0.527 5.527 4 C 0.061 3.939 5 C -0.105 4.105 6 C 0.597 3.403 7 O -0.562 6.562 8 N -0.719 5.719 9 C 0.138 3.862 10 C -0.099 4.099 11 H 0.108 0.892 12 C -0.107 4.107 13 C 0.122 3.878 14 N -0.631 5.631 15 C -0.240 4.240 16 H 0.057 0.943 17 C -0.046 4.046 18 N -0.957 5.957 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.311 1.311 22 H -0.263 1.263 23 C 0.118 3.882 24 N -0.544 5.544 25 H 0.435 0.565 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.186 0.814 30 H 0.404 0.596 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.019 0.981 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.572 12.419 16.106 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.015 4.015 3 N -0.247 5.247 4 C -0.093 4.093 5 C -0.221 4.221 6 C 0.384 3.616 7 O -0.441 6.441 8 N -0.370 5.370 9 C 0.015 3.985 10 C -0.118 4.118 11 H 0.127 0.873 12 C -0.146 4.146 13 C -0.002 4.002 14 N -0.358 5.358 15 C -0.369 4.369 16 H 0.075 0.925 17 C -0.240 4.240 18 N -0.604 5.604 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.240 1.240 22 H -0.188 1.188 23 C -0.006 4.006 24 N -0.150 5.150 25 H 0.276 0.724 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.203 0.797 30 H 0.239 0.761 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.102 13.490 15.907 21.472 hybrid contribution -0.781 -1.446 -0.644 1.765 sum -5.883 12.045 15.263 20.314 Atomic orbital electron populations 1.20571 0.81044 1.06267 1.05459 1.24308 0.97469 0.80842 0.98917 1.70226 1.02204 1.29566 1.22753 1.22845 0.95283 0.91626 0.99521 1.20957 0.84283 0.95838 1.21054 1.16963 0.86977 0.81732 0.75933 1.90827 1.27179 1.73875 1.52228 1.45883 1.10951 1.05392 1.74739 1.21403 0.86482 0.87660 1.02951 1.22400 0.99279 0.93528 0.96635 0.87342 1.22710 0.95793 0.93607 1.02453 1.21889 0.92813 0.96311 0.89218 1.44996 1.55845 1.14248 1.20717 1.18649 1.07439 1.12404 0.98410 0.92520 1.25727 1.00911 1.01538 0.95821 1.70007 1.30907 1.52793 1.06694 0.85747 0.78751 0.78748 0.78050 1.19625 1.24010 1.18845 1.21873 0.96098 0.86780 0.95879 1.43248 1.05145 1.11179 1.55469 0.72405 0.88321 0.87695 0.87853 0.79665 0.76071 0.92475 0.88775 0.90846 0.86775 0.93795 0.94426 0.92946 0.96375 0.96317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.25 4.57 8.12 138.20 1.12 5.69 16 3 N -0.53 -12.93 11.20 -187.40 -2.10 -15.02 16 4 C 0.06 1.57 11.66 84.10 0.98 2.55 16 5 C -0.11 -2.58 7.08 40.01 0.28 -2.29 16 6 C 0.60 16.48 7.79 86.47 0.67 17.16 16 7 O -0.56 -19.19 16.90 -4.31 -0.07 -19.27 16 8 N -0.72 -17.17 5.43 -466.99 -2.53 -19.71 16 9 C 0.14 3.41 5.00 86.38 0.43 3.84 16 10 C -0.10 -2.59 2.98 -9.61 -0.03 -2.62 16 11 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 12 C -0.11 -2.69 6.54 31.99 0.21 -2.48 16 13 C 0.12 4.28 7.23 86.86 0.63 4.91 16 14 N -0.63 -29.10 3.22 -691.22 -2.22 -31.32 16 15 C -0.24 -13.76 10.56 84.03 0.89 -12.87 16 16 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 17 C -0.05 -2.67 5.43 84.86 0.46 -2.21 16 18 N -0.96 -60.51 13.97 21.65 0.30 -60.20 16 19 Si 0.96 44.87 24.38 68.60 1.67 46.54 16 20 H -0.27 -11.65 6.83 99.48 0.68 -10.97 16 21 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 22 H -0.26 -11.42 6.87 99.48 0.68 -10.73 16 23 C 0.12 4.56 4.55 86.67 0.39 4.96 16 24 N -0.54 -9.80 6.07 -176.11 -1.07 -10.87 16 25 H 0.43 5.27 8.32 -92.71 -0.77 4.50 16 26 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.19 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.40 8.01 7.65 -92.71 -0.71 7.30 16 31 H 0.06 1.67 8.01 -2.39 -0.02 1.65 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.89 8.05 -2.38 -0.02 1.87 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.02 0.74 3.55 -2.39 -0.01 0.73 16 39 H 0.02 0.81 7.73 -2.39 -0.02 0.79 16 Total: -1.00 -78.73 322.28 0.32 -78.41 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.45 Total: 14.74 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.79 Total: 16.70 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -7.62 Total: -137.13 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -78.73 0.32 -78.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028442089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.314 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds