Wall clock time and date at job start Mon Mar 30 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 6 6 C 1.46763 * 126.84575 * 179.80041 * 5 4 3 7 7 O 1.21680 * 120.00308 * 359.95735 * 6 5 4 8 8 N 1.34778 * 120.00191 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00164 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46974 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.88576 * 51.12255 * 10 9 8 12 12 C 1.55157 * 111.00225 * 175.00018 * 10 9 8 13 13 C 1.54322 * 102.94226 * 153.57544 * 12 10 9 14 14 N 1.47025 * 107.27059 * 337.80635 * 13 12 10 15 15 C 1.36932 * 125.64821 * 178.91839 * 14 13 12 16 16 H 1.08004 * 120.00142 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00030 * 0.02856 * 15 14 13 18 18 N 1.31616 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47092 * 59.99645 * 19 17 15 21 21 H 1.48500 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47102 * 299.99964 * 19 17 15 23 23 C 1.47421 * 108.70097 * 358.93967 * 14 13 12 24 24 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 25 25 H 0.97004 * 126.47269 * 359.95323 * 24 2 1 26 26 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 29 29 H 1.08004 * 126.10479 * 180.13988 * 4 3 2 30 30 H 0.97008 * 119.99914 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.46822 * 299.99896 * 9 8 6 32 32 H 1.08999 * 109.47185 * 59.99959 * 9 8 6 33 33 H 1.09001 * 110.72172 * 271.93982 * 12 10 9 34 34 H 1.08997 * 110.72283 * 35.03427 * 12 10 9 35 35 H 1.09001 * 109.88561 * 97.22047 * 13 12 10 36 36 H 1.09003 * 109.88169 * 218.38929 * 13 12 10 37 37 H 0.97002 * 120.00358 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.37036 * 265.28950 * 23 14 13 39 39 H 1.09003 * 110.36573 * 142.97025 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 3.5976 -0.6608 -0.0041 6 6 4.8028 -1.4982 -0.0081 7 8 5.9038 -0.9800 -0.0059 8 7 4.6903 -2.8413 -0.0145 9 6 5.8934 -3.6772 -0.0190 10 6 5.4891 -5.1529 -0.0266 11 1 4.7698 -5.3546 -0.8203 12 6 6.7338 -6.0698 -0.1578 13 6 6.2714 -7.3788 0.5162 14 7 5.1606 -7.0373 1.4168 15 6 4.4562 -7.9237 2.1870 16 1 3.6535 -7.5717 2.8181 17 6 4.7738 -9.2746 2.1566 18 7 5.7516 -9.7037 1.3872 19 14 3.8134 -10.4838 3.2078 20 1 2.3795 -10.4435 2.8236 21 1 4.3439 -11.8544 2.9956 22 1 3.9527 -10.1146 4.6395 23 6 4.9304 -5.5825 1.3528 24 7 2.2865 -1.0961 -0.0060 25 1 1.9850 -2.0180 -0.0103 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5091 29 1 4.3978 1.3722 0.0058 30 1 3.8126 -3.2545 -0.0161 31 1 6.4845 -3.4582 -0.9082 32 1 6.4854 -3.4668 0.8717 33 1 6.9778 -6.2412 -1.2062 34 1 7.5859 -5.6413 0.3698 35 1 5.9311 -8.0854 -0.2407 36 1 7.0925 -7.8115 1.0879 37 1 5.9738 -10.6477 1.3662 38 1 5.4693 -5.0775 2.1545 39 1 3.8643 -5.3641 1.4150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028442090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:17 Heat of formation + Delta-G solvation = 37.895991 kcal Electronic energy + Delta-G solvation = -21040.106144 eV Core-core repulsion = 17790.997936 eV Total energy + Delta-G solvation = -3249.108208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46199 -39.47340 -37.68586 -34.86070 -33.11392 -32.51125 -32.09551 -29.92111 -28.56587 -27.54726 -25.61321 -23.95606 -22.60384 -21.13538 -20.70093 -20.07133 -19.94550 -18.63283 -16.89527 -16.29007 -16.05330 -15.95914 -15.22520 -14.75266 -14.53522 -14.17568 -14.03375 -13.67606 -13.52372 -13.26527 -12.89638 -12.81459 -12.42994 -12.09390 -11.82520 -11.48717 -10.97071 -10.83871 -10.69036 -10.50452 -10.45340 -10.26226 -10.13929 -9.98055 -9.87975 -9.72236 -9.20207 -8.69597 -8.66068 -6.90434 -5.77388 -3.11534 1.07613 2.55479 2.57058 3.04432 3.21501 3.35298 3.39797 3.41338 4.04173 4.43262 4.53690 4.73967 4.96171 5.04184 5.09219 5.12908 5.26597 5.33590 5.47542 5.48422 5.54937 5.61208 5.80026 5.94961 5.97220 6.23548 6.26747 6.31737 6.39422 6.46058 6.58799 6.81489 6.88208 7.30708 7.48792 7.56810 7.65890 7.76177 8.02129 8.19659 9.15552 9.75906 10.41731 11.34178 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003519 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.269645 B = 7954.629838 C = 8986.349622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.237 3.763 3 N -0.497 5.497 4 C 0.069 3.931 5 C -0.088 4.088 6 C 0.593 3.407 7 O -0.528 6.528 8 N -0.723 5.723 9 C 0.133 3.867 10 C -0.118 4.118 11 H 0.079 0.921 12 C -0.134 4.134 13 C 0.177 3.823 14 N -0.606 5.606 15 C -0.233 4.233 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.143 3.857 24 N -0.551 5.551 25 H 0.422 0.578 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.184 0.816 30 H 0.395 0.605 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.253 0.747 38 H 0.020 0.980 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 15.693 -5.108 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.027 4.027 3 N -0.217 5.217 4 C -0.084 4.084 5 C -0.203 4.203 6 C 0.378 3.622 7 O -0.405 6.405 8 N -0.373 5.373 9 C 0.009 3.991 10 C -0.138 4.138 11 H 0.097 0.903 12 C -0.173 4.173 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.361 4.361 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.016 3.984 24 N -0.157 5.157 25 H 0.261 0.739 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.201 0.799 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.347 16.598 -5.065 18.844 hybrid contribution -0.713 -2.280 0.571 2.456 sum -8.060 14.317 -4.493 17.033 Atomic orbital electron populations 1.20322 0.84196 1.04605 1.04179 1.23483 0.95926 0.81550 1.01718 1.70205 1.02155 1.28224 1.21159 1.22658 0.94734 0.91264 0.99766 1.21233 0.83716 0.96098 1.19293 1.16845 0.86939 0.81579 0.76792 1.90852 1.25833 1.73279 1.50486 1.45988 1.10642 1.05601 1.75089 1.21479 0.86106 0.88999 1.02468 1.22631 0.99505 0.91767 0.99930 0.90288 1.22860 0.95945 0.97940 1.00592 1.21155 0.90488 0.90617 0.92497 1.44468 1.37971 1.00658 1.50156 1.18995 1.11577 0.87506 1.18025 0.90577 1.24810 0.98719 0.96935 0.99870 1.69949 1.31070 1.14199 1.41619 0.86196 0.79139 0.80459 0.79923 1.21183 1.21524 1.21129 1.21575 0.97062 0.86894 0.92856 1.43278 1.06129 1.10350 1.55928 0.73862 0.89487 0.90297 0.88655 0.79872 0.77150 0.91247 0.90910 0.91907 0.92071 0.93514 0.93825 0.93627 0.96253 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.24 2.18 8.12 -155.61 -1.26 0.92 16 3 N -0.50 -5.97 11.20 -10.58 -0.12 -6.09 16 4 C 0.07 0.85 11.66 -17.48 -0.20 0.65 16 5 C -0.09 -1.03 7.07 -82.15 -0.58 -1.61 16 6 C 0.59 8.03 7.79 -12.81 -0.10 7.93 16 7 O -0.53 -8.91 16.90 5.21 0.09 -8.82 16 8 N -0.72 -8.72 5.50 -61.59 -0.34 -9.06 16 9 C 0.13 1.82 5.13 -4.04 -0.02 1.80 16 10 C -0.12 -1.86 3.05 -88.47 -0.27 -2.13 16 11 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16 13 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 14 N -0.61 -15.01 3.39 -170.07 -0.58 -15.59 16 15 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 16 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 19 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.14 2.75 6.65 -2.53 -0.02 2.73 16 24 N -0.55 -4.81 6.07 -7.02 -0.04 -4.86 16 25 H 0.42 2.46 8.32 -40.82 -0.34 2.12 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.18 2.03 8.06 -52.48 -0.42 1.61 16 30 H 0.40 3.88 7.72 -40.82 -0.31 3.57 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 36 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -33.91 327.81 -8.60 -42.51 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.60 Total: 1.27 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.50 Total: 5.13 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.50 Total: -61.67 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.91 -8.60 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028442090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.404 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds