Wall clock time and date at job start Mon Mar 30 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 6 6 C 1.46763 * 126.84575 * 179.80041 * 5 4 3 7 7 O 1.21680 * 120.00308 * 359.95735 * 6 5 4 8 8 N 1.34778 * 120.00191 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00164 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46974 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.88576 * 51.12255 * 10 9 8 12 12 C 1.55157 * 111.00225 * 175.00018 * 10 9 8 13 13 C 1.54322 * 102.94226 * 153.57544 * 12 10 9 14 14 N 1.47025 * 107.27059 * 337.80635 * 13 12 10 15 15 C 1.36932 * 125.64821 * 178.91839 * 14 13 12 16 16 H 1.08004 * 120.00142 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00030 * 0.02856 * 15 14 13 18 18 N 1.31616 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47092 * 59.99645 * 19 17 15 21 21 H 1.48500 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47102 * 299.99964 * 19 17 15 23 23 C 1.47421 * 108.70097 * 358.93967 * 14 13 12 24 24 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 25 25 H 0.97004 * 126.47269 * 359.95323 * 24 2 1 26 26 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 29 29 H 1.08004 * 126.10479 * 180.13988 * 4 3 2 30 30 H 0.97008 * 119.99914 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.46822 * 299.99896 * 9 8 6 32 32 H 1.08999 * 109.47185 * 59.99959 * 9 8 6 33 33 H 1.09001 * 110.72172 * 271.93982 * 12 10 9 34 34 H 1.08997 * 110.72283 * 35.03427 * 12 10 9 35 35 H 1.09001 * 109.88561 * 97.22047 * 13 12 10 36 36 H 1.09003 * 109.88169 * 218.38929 * 13 12 10 37 37 H 0.97002 * 120.00358 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.37036 * 265.28950 * 23 14 13 39 39 H 1.09003 * 110.36573 * 142.97025 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 3.5976 -0.6608 -0.0041 6 6 4.8028 -1.4982 -0.0081 7 8 5.9038 -0.9800 -0.0059 8 7 4.6903 -2.8413 -0.0145 9 6 5.8934 -3.6772 -0.0190 10 6 5.4891 -5.1529 -0.0266 11 1 4.7698 -5.3546 -0.8203 12 6 6.7338 -6.0698 -0.1578 13 6 6.2714 -7.3788 0.5162 14 7 5.1606 -7.0373 1.4168 15 6 4.4562 -7.9237 2.1870 16 1 3.6535 -7.5717 2.8181 17 6 4.7738 -9.2746 2.1566 18 7 5.7516 -9.7037 1.3872 19 14 3.8134 -10.4838 3.2078 20 1 2.3795 -10.4435 2.8236 21 1 4.3439 -11.8544 2.9956 22 1 3.9527 -10.1146 4.6395 23 6 4.9304 -5.5825 1.3528 24 7 2.2865 -1.0961 -0.0060 25 1 1.9850 -2.0180 -0.0103 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5091 29 1 4.3978 1.3722 0.0058 30 1 3.8126 -3.2545 -0.0161 31 1 6.4845 -3.4582 -0.9082 32 1 6.4854 -3.4668 0.8717 33 1 6.9778 -6.2412 -1.2062 34 1 7.5859 -5.6413 0.3698 35 1 5.9311 -8.0854 -0.2407 36 1 7.0925 -7.8115 1.0879 37 1 5.9738 -10.6477 1.3662 38 1 5.4693 -5.0775 2.1545 39 1 3.8643 -5.3641 1.4150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028442090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:17 Heat of formation + Delta-G solvation = 13.616448 kcal Electronic energy + Delta-G solvation = -21041.158984 eV Core-core repulsion = 17790.997936 eV Total energy + Delta-G solvation = -3250.161048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.26187 -40.59233 -39.22282 -36.17741 -34.49216 -33.67880 -32.84411 -31.60670 -30.03087 -28.44212 -27.22868 -25.46858 -23.63300 -22.14002 -21.82682 -21.63314 -21.10324 -19.64133 -18.77879 -17.42358 -17.02943 -16.86332 -16.69683 -16.33138 -15.74053 -15.59516 -15.02088 -14.89566 -14.62668 -14.26174 -14.00627 -13.83985 -13.52238 -13.37411 -13.21470 -13.05412 -12.79462 -12.62473 -12.08089 -11.97448 -11.87227 -11.59009 -11.56268 -11.47454 -11.24892 -11.07299 -10.70653 -10.28405 -9.53166 -8.91152 -7.85906 -5.21716 0.20403 1.45513 1.48498 1.54900 1.74154 1.79073 2.07881 2.24510 2.48834 3.32342 3.39540 3.57656 3.71794 3.83478 3.98536 4.01179 4.09460 4.29759 4.41239 4.58267 4.60754 4.69929 4.76679 4.79158 4.85158 4.89037 5.01267 5.07093 5.12929 5.22848 5.40854 5.44433 5.47206 5.67082 5.77232 6.19116 6.23005 6.37558 6.86314 7.01044 7.09352 7.77261 8.41396 9.24298 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.003519 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.269645 B = 7954.629838 C = 8986.349622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.248 3.752 3 N -0.529 5.529 4 C 0.057 3.943 5 C -0.101 4.101 6 C 0.596 3.404 7 O -0.567 6.567 8 N -0.712 5.712 9 C 0.144 3.856 10 C -0.095 4.095 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.182 3.818 14 N -0.629 5.629 15 C -0.245 4.245 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.279 1.279 23 C 0.137 3.863 24 N -0.539 5.539 25 H 0.437 0.563 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.183 0.817 30 H 0.408 0.592 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.003 0.997 37 H 0.246 0.754 38 H 0.017 0.983 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 16.573 -5.350 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.250 5.250 4 C -0.097 4.097 5 C -0.217 4.217 6 C 0.384 3.616 7 O -0.446 6.446 8 N -0.363 5.363 9 C 0.020 3.980 10 C -0.114 4.114 11 H 0.111 0.889 12 C -0.162 4.162 13 C 0.057 3.943 14 N -0.355 5.355 15 C -0.374 4.374 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.222 1.222 22 H -0.205 1.205 23 C 0.012 3.988 24 N -0.146 5.146 25 H 0.279 0.721 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.200 0.800 30 H 0.244 0.756 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.481 17.481 -5.305 20.582 hybrid contribution -0.125 -2.498 0.673 2.590 sum -9.606 14.983 -4.632 18.391 Atomic orbital electron populations 1.20554 0.81079 1.06100 1.05497 1.24279 0.97420 0.80898 0.98997 1.70221 1.02228 1.29761 1.22810 1.22819 0.95235 0.91784 0.99826 1.20893 0.84311 0.95656 1.20821 1.16977 0.86912 0.81782 0.75969 1.90832 1.27389 1.73976 1.52384 1.45804 1.10872 1.05104 1.74505 1.21249 0.86584 0.87560 1.02580 1.22423 0.98449 0.92544 0.98030 0.88927 1.22722 0.96970 0.95061 1.01414 1.20922 0.89007 0.93037 0.91296 1.44797 1.38013 1.02807 1.49930 1.19439 1.11641 0.88305 1.18020 0.89821 1.25664 0.99981 0.98823 1.01502 1.70181 1.32729 1.13855 1.43294 0.85160 0.78185 0.77638 0.78395 1.19921 1.22238 1.20504 1.21771 0.98280 0.83903 0.94808 1.43195 1.04897 1.11207 1.55295 0.72098 0.88104 0.87734 0.88227 0.79963 0.75616 0.90230 0.91861 0.89507 0.91033 0.96827 0.97912 0.94439 0.96536 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.25 3.97 8.12 138.20 1.12 5.09 16 3 N -0.53 -12.05 11.20 -187.39 -2.10 -14.15 16 4 C 0.06 1.37 11.66 84.10 0.98 2.35 16 5 C -0.10 -2.22 7.07 40.01 0.28 -1.94 16 6 C 0.60 15.30 7.79 86.47 0.67 15.97 16 7 O -0.57 -18.75 16.90 -4.28 -0.07 -18.83 16 8 N -0.71 -15.43 5.50 -466.99 -2.57 -18.00 16 9 C 0.14 3.59 5.13 86.38 0.44 4.03 16 10 C -0.09 -2.75 3.05 -9.40 -0.03 -2.78 16 11 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 12 C -0.12 -4.14 6.42 31.78 0.20 -3.94 16 13 C 0.18 8.75 5.37 86.73 0.47 9.22 16 14 N -0.63 -31.14 3.39 -691.99 -2.35 -33.49 16 15 C -0.25 -13.38 10.28 84.03 0.86 -12.52 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 17 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 18 N -0.95 -56.72 10.31 21.65 0.22 -56.50 16 19 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 C 0.14 5.06 6.65 86.85 0.58 5.64 16 24 N -0.54 -8.05 6.07 -176.11 -1.07 -9.12 16 25 H 0.44 3.64 8.32 -92.71 -0.77 2.87 16 26 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.10 0.64 8.14 -2.38 -0.02 0.63 16 29 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.41 6.73 7.72 -92.70 -0.72 6.01 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 35 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 36 H 0.00 0.14 7.51 -2.39 -0.02 0.13 16 37 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.02 0.64 7.91 -2.39 -0.02 0.62 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.43 327.81 0.48 -74.95 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -0.41 Total: 10.19 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.80 Total: 18.13 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -7.86 Total: -131.26 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.07 Total: -18.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.43 0.48 -74.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028442090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.562 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds