Wall clock time and date at job start Tue Mar 31 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 N 1.46494 * 109.47163 * 120.00038 * 2 1 3 5 5 N 1.28442 * 125.19174 * 294.78240 * 4 2 1 6 6 C 1.30866 * 110.92592 * 180.02562 * 5 4 2 7 7 C 1.39670 * 107.86149 * 0.26067 * 6 5 4 8 8 C 1.36601 * 125.18958 * 114.78167 * 4 2 1 9 9 C 1.47168 * 126.88362 * 0.02562 * 8 4 2 10 10 O 1.21626 * 119.99670 * 4.98919 * 9 8 4 11 11 N 1.34779 * 119.99840 * 184.98355 * 9 8 4 12 12 C 1.46499 * 119.99869 * 185.15499 * 11 9 8 13 13 C 1.53942 * 113.74365 * 253.74658 * 12 11 9 14 14 N 1.47809 * 86.03411 * 222.08316 * 13 12 11 15 15 C 1.36944 * 134.45816 * 204.64069 * 14 13 12 16 16 H 1.07996 * 120.00340 * 174.58168 * 15 14 13 17 17 C 1.38810 * 119.99572 * 354.58341 * 15 14 13 18 18 N 1.31624 * 120.00508 * 5.01059 * 17 15 14 19 19 Si 1.86805 * 119.99894 * 185.01091 * 17 15 14 20 20 H 1.48496 * 109.47026 * 94.99901 * 19 17 15 21 21 H 1.48500 * 109.47118 * 214.99577 * 19 17 15 22 22 H 1.48494 * 109.46944 * 334.99433 * 19 17 15 23 23 C 1.47579 * 91.05323 * 24.55006 * 14 13 12 24 24 H 1.08994 * 109.47300 * 59.99744 * 1 2 3 25 25 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46782 * 300.00106 * 1 2 3 27 27 H 1.09000 * 109.46782 * 239.99894 * 2 1 3 28 28 H 1.09002 * 109.47445 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47143 * 300.00174 * 3 2 1 30 30 H 1.09000 * 109.47367 * 60.00252 * 3 2 1 31 31 H 1.08003 * 126.06848 * 180.02562 * 6 5 4 32 32 H 1.07999 * 127.31791 * 179.74000 * 7 6 5 33 33 H 0.96998 * 119.99615 * 5.15951 * 11 9 8 34 34 H 1.09003 * 112.93943 * 25.34076 * 12 11 9 35 35 H 1.08996 * 113.76946 * 336.35099 * 13 12 11 36 36 H 1.09006 * 113.76994 * 107.74807 * 13 12 11 37 37 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 38 38 H 1.08996 * 113.77091 * 221.15004 * 23 14 13 39 39 H 1.09000 * 113.77166 * 89.75074 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.8503 -0.2876 2.4040 6 6 2.4010 -1.1162 3.2541 7 6 2.9866 -2.1528 2.5239 8 6 2.7220 -1.8615 1.1970 9 6 3.1248 -2.6508 0.0220 10 8 2.9094 -2.2276 -1.0977 11 7 3.7324 -3.8425 0.1869 12 6 4.2346 -4.5759 -0.9776 13 6 3.3809 -5.8001 -1.3546 14 7 4.6646 -6.5011 -1.5679 15 6 5.0577 -7.5739 -2.3229 16 1 6.1017 -7.8458 -2.3725 17 6 4.1142 -8.3118 -3.0245 18 7 2.8568 -7.9234 -3.0443 19 14 4.6291 -9.8563 -3.9405 20 1 4.3973 -11.0433 -3.0788 21 1 3.8286 -9.9839 -5.1847 22 1 6.0707 -9.7693 -4.2860 23 6 5.3526 -5.5798 -0.6429 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 2.4055 -1.0144 4.3293 32 1 3.5281 -3.0027 2.9122 33 1 3.8370 -4.2145 1.0765 34 1 4.4666 -3.9259 -1.8214 35 1 2.7948 -6.1988 -0.5266 36 1 2.7964 -5.6648 -2.2647 37 1 2.1974 -8.4392 -3.5343 38 1 6.3395 -5.2689 -0.9856 39 1 5.3470 -5.9137 0.3947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030366909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:47 Heat of formation + Delta-G solvation = 96.729461 kcal Electronic energy + Delta-G solvation = -21479.946436 eV Core-core repulsion = 18233.389438 eV Total energy + Delta-G solvation = -3246.556997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.57833 -39.40756 -37.52820 -35.84132 -33.66069 -31.99655 -30.67804 -30.37336 -27.50362 -27.47401 -24.89108 -24.25686 -23.01981 -22.45297 -20.86193 -19.98660 -19.21770 -17.66769 -16.82486 -16.20246 -15.98127 -15.57069 -14.97672 -14.90682 -14.40547 -14.27717 -14.02093 -13.82749 -13.14732 -13.07984 -12.74635 -12.42909 -12.32904 -12.02551 -11.56794 -11.53730 -11.52715 -11.34939 -10.90343 -10.84299 -10.78468 -10.52746 -10.07973 -9.71488 -9.57595 -9.23506 -9.07002 -8.84956 -8.54138 -6.96044 -5.82469 -3.16022 1.30846 2.34323 2.60048 3.33853 3.35207 3.38558 3.44135 3.44956 4.37416 4.41534 4.67795 4.72786 4.82872 5.06063 5.07724 5.12438 5.34129 5.41022 5.42470 5.50869 5.52086 5.52212 5.68483 5.69056 5.90890 5.93676 6.00406 6.13649 6.34395 6.46216 6.48722 6.65449 6.74686 7.18935 7.26954 7.49991 7.70168 7.91519 8.06314 8.32984 8.98268 9.64778 10.50782 11.34604 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.003572 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.035951 B = 7836.358188 C = 8229.694676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.156 4.156 4 N -0.249 5.249 5 N -0.279 5.279 6 C -0.009 4.009 7 C -0.193 4.193 8 C -0.032 4.032 9 C 0.587 3.413 10 O -0.543 6.543 11 N -0.696 5.696 12 C 0.092 3.908 13 C 0.157 3.843 14 N -0.606 5.606 15 C -0.228 4.228 16 H 0.083 0.917 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.113 3.887 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.400 0.600 34 H 0.112 0.888 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.051 0.949 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 15.563 10.836 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.038 5.038 5 N -0.112 5.112 6 C -0.184 4.184 7 C -0.222 4.222 8 C -0.161 4.161 9 C 0.372 3.628 10 O -0.421 6.421 11 N -0.346 5.346 12 C -0.012 4.012 13 C 0.030 3.970 14 N -0.333 5.333 15 C -0.355 4.355 16 H 0.101 0.899 17 C -0.201 4.201 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.014 4.014 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.156 0.844 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.200 0.800 32 H 0.177 0.823 33 H 0.235 0.765 34 H 0.130 0.870 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.517 16.652 9.568 19.369 hybrid contribution 0.663 -1.943 0.262 2.070 sum -1.854 14.709 9.829 17.788 Atomic orbital electron populations 1.22122 0.92976 1.03252 1.03323 1.22145 0.95957 0.94563 0.84886 1.22079 1.01893 0.94036 1.03401 1.45991 1.36860 1.15393 1.05536 1.73090 1.22013 1.26125 0.89950 1.23517 1.01528 0.93593 0.99811 1.22249 1.06523 1.02623 0.90825 1.21600 1.05615 0.92884 0.96008 1.16973 0.78038 0.81258 0.86550 1.90716 1.55637 1.70657 1.25111 1.45878 1.58109 1.19052 1.11560 1.24051 0.97304 0.92312 0.87555 1.22675 0.89965 0.85162 0.99176 1.45700 1.05681 1.34361 1.47568 1.18992 0.92918 1.02842 1.20774 0.89934 1.24843 0.95365 0.99194 1.00742 1.69844 1.01131 1.39673 1.45611 0.86091 0.77650 0.83050 0.78924 1.21548 1.21615 1.20450 1.22875 0.95370 0.88839 0.94292 0.90230 0.91841 0.91436 0.84359 0.92028 0.90328 0.91214 0.79958 0.82290 0.76494 0.86995 0.95092 0.90648 0.93480 0.93084 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.45 37.16 0.35 -1.29 16 2 C 0.12 1.49 3.55 -67.93 -0.24 1.25 16 3 C -0.16 -1.53 9.30 37.16 0.35 -1.18 16 4 N -0.25 -3.37 3.09 -50.69 -0.16 -3.53 16 5 N -0.28 -3.62 11.52 30.59 0.35 -3.27 16 6 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 7 C -0.19 -2.19 10.50 -38.99 -0.41 -2.60 16 8 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 9 C 0.59 9.43 7.79 -12.63 -0.10 9.34 16 10 O -0.54 -10.22 14.05 5.25 0.07 -10.15 16 11 N -0.70 -10.59 5.35 -56.52 -0.30 -10.89 16 12 C 0.09 1.74 4.36 -70.16 -0.31 1.43 16 13 C 0.16 3.68 7.26 -2.84 -0.02 3.66 16 14 N -0.61 -15.28 3.70 -177.92 -0.66 -15.94 16 15 C -0.23 -6.32 10.70 -15.06 -0.16 -6.48 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -27.18 11.48 55.49 0.64 -26.54 16 19 Si 0.91 21.92 29.56 -169.99 -5.02 16.89 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.11 2.18 8.69 -2.97 -0.03 2.16 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.14 1.92 5.32 -51.93 -0.28 1.64 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.16 1.35 7.62 -52.49 -0.40 0.95 16 33 H 0.40 4.95 7.79 -40.82 -0.32 4.63 16 34 H 0.11 2.26 7.57 -51.93 -0.39 1.86 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 2.02 7.31 -51.93 -0.38 1.64 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.65 8.11 -51.93 -0.42 0.22 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.90 329.19 -7.10 -40.00 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.54 Total: 3.73 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.44 Total: 4.74 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.13 Total: -60.17 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.90 -7.10 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030366909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.725 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds