Wall clock time and date at job start Tue Mar 31 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 N 1.46494 * 109.47163 * 120.00038 * 2 1 3 5 5 N 1.28442 * 125.19174 * 294.78240 * 4 2 1 6 6 C 1.30866 * 110.92592 * 180.02562 * 5 4 2 7 7 C 1.39670 * 107.86149 * 0.26067 * 6 5 4 8 8 C 1.36601 * 125.18958 * 114.78167 * 4 2 1 9 9 C 1.47168 * 126.88362 * 0.02562 * 8 4 2 10 10 O 1.21626 * 119.99670 * 4.98919 * 9 8 4 11 11 N 1.34779 * 119.99840 * 184.98355 * 9 8 4 12 12 C 1.46499 * 119.99869 * 185.15499 * 11 9 8 13 13 C 1.53942 * 113.74365 * 253.74658 * 12 11 9 14 14 N 1.47809 * 86.03411 * 222.08316 * 13 12 11 15 15 C 1.36944 * 134.45816 * 204.64069 * 14 13 12 16 16 H 1.07996 * 120.00340 * 174.58168 * 15 14 13 17 17 C 1.38810 * 119.99572 * 354.58341 * 15 14 13 18 18 N 1.31624 * 120.00508 * 5.01059 * 17 15 14 19 19 Si 1.86805 * 119.99894 * 185.01091 * 17 15 14 20 20 H 1.48496 * 109.47026 * 94.99901 * 19 17 15 21 21 H 1.48500 * 109.47118 * 214.99577 * 19 17 15 22 22 H 1.48494 * 109.46944 * 334.99433 * 19 17 15 23 23 C 1.47579 * 91.05323 * 24.55006 * 14 13 12 24 24 H 1.08994 * 109.47300 * 59.99744 * 1 2 3 25 25 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46782 * 300.00106 * 1 2 3 27 27 H 1.09000 * 109.46782 * 239.99894 * 2 1 3 28 28 H 1.09002 * 109.47445 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47143 * 300.00174 * 3 2 1 30 30 H 1.09000 * 109.47367 * 60.00252 * 3 2 1 31 31 H 1.08003 * 126.06848 * 180.02562 * 6 5 4 32 32 H 1.07999 * 127.31791 * 179.74000 * 7 6 5 33 33 H 0.96998 * 119.99615 * 5.15951 * 11 9 8 34 34 H 1.09003 * 112.93943 * 25.34076 * 12 11 9 35 35 H 1.08996 * 113.76946 * 336.35099 * 13 12 11 36 36 H 1.09006 * 113.76994 * 107.74807 * 13 12 11 37 37 H 0.97000 * 120.00142 * 180.02562 * 18 17 15 38 38 H 1.08996 * 113.77091 * 221.15004 * 23 14 13 39 39 H 1.09000 * 113.77166 * 89.75074 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.8503 -0.2876 2.4040 6 6 2.4010 -1.1162 3.2541 7 6 2.9866 -2.1528 2.5239 8 6 2.7220 -1.8615 1.1970 9 6 3.1248 -2.6508 0.0220 10 8 2.9094 -2.2276 -1.0977 11 7 3.7324 -3.8425 0.1869 12 6 4.2346 -4.5759 -0.9776 13 6 3.3809 -5.8001 -1.3546 14 7 4.6646 -6.5011 -1.5679 15 6 5.0577 -7.5739 -2.3229 16 1 6.1017 -7.8458 -2.3725 17 6 4.1142 -8.3118 -3.0245 18 7 2.8568 -7.9234 -3.0443 19 14 4.6291 -9.8563 -3.9405 20 1 4.3973 -11.0433 -3.0788 21 1 3.8286 -9.9839 -5.1847 22 1 6.0707 -9.7693 -4.2860 23 6 5.3526 -5.5798 -0.6429 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 2.4055 -1.0144 4.3293 32 1 3.5281 -3.0027 2.9122 33 1 3.8370 -4.2145 1.0765 34 1 4.4666 -3.9259 -1.8214 35 1 2.7948 -6.1988 -0.5266 36 1 2.7964 -5.6648 -2.2647 37 1 2.1974 -8.4392 -3.5343 38 1 6.3395 -5.2689 -0.9856 39 1 5.3470 -5.9137 0.3947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030366909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:46 Heat of formation + Delta-G solvation = 73.948373 kcal Electronic energy + Delta-G solvation = -21480.934298 eV Core-core repulsion = 18233.389438 eV Total energy + Delta-G solvation = -3247.544859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.53196 -40.84270 -39.13776 -36.74251 -35.20109 -33.86984 -31.80534 -31.27108 -29.36954 -28.29455 -26.63376 -25.74883 -24.15980 -23.69092 -22.02024 -21.47313 -20.44210 -18.82388 -18.74077 -17.53706 -17.06987 -16.90598 -16.74041 -15.81429 -15.78239 -15.61131 -15.52902 -14.86862 -14.59086 -14.06795 -13.97282 -13.73456 -13.36016 -13.23053 -13.17648 -13.11207 -12.83670 -12.65688 -12.42275 -12.33426 -12.28887 -11.93383 -11.75907 -11.52605 -10.99371 -10.88966 -10.31423 -10.01730 -9.91245 -8.97208 -7.93431 -5.28044 0.24378 1.36155 1.46816 1.48683 1.57733 1.70913 2.14046 2.16443 2.49610 3.23125 3.37096 3.50510 3.59702 3.81837 3.87786 4.00586 4.17775 4.20573 4.29565 4.49807 4.58377 4.60550 4.64007 4.72029 4.76283 4.85313 4.91034 4.91333 5.06588 5.12382 5.17800 5.22255 5.48081 5.59340 5.65887 5.82409 5.88165 6.43997 6.87464 7.07061 7.15157 7.57751 8.50315 9.23906 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.003572 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.035951 B = 7836.358188 C = 8229.694676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.116 3.884 3 C -0.147 4.147 4 N -0.258 5.258 5 N -0.291 5.291 6 C -0.008 4.008 7 C -0.175 4.175 8 C -0.064 4.064 9 C 0.588 3.412 10 O -0.577 6.577 11 N -0.683 5.683 12 C 0.123 3.877 13 C 0.154 3.846 14 N -0.638 5.638 15 C -0.236 4.236 16 H 0.092 0.908 17 C -0.067 4.067 18 N -0.954 5.954 19 Si 0.981 3.019 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.263 1.263 23 C 0.124 3.876 24 H 0.100 0.900 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.219 0.781 32 H 0.191 0.809 33 H 0.418 0.582 34 H 0.097 0.903 35 H 0.026 0.974 36 H 0.031 0.969 37 H 0.248 0.752 38 H 0.068 0.932 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 16.112 12.909 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.205 4.205 4 N -0.048 5.048 5 N -0.124 5.124 6 C -0.183 4.183 7 C -0.204 4.204 8 C -0.192 4.192 9 C 0.375 3.625 10 O -0.458 6.458 11 N -0.335 5.335 12 C 0.017 3.983 13 C 0.027 3.973 14 N -0.366 5.366 15 C -0.364 4.364 16 H 0.110 0.890 17 C -0.260 4.260 18 N -0.603 5.603 19 Si 0.809 3.191 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.188 1.188 23 C -0.002 4.002 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.208 0.792 33 H 0.256 0.744 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.312 17.221 11.697 20.860 hybrid contribution 0.299 -2.028 -0.293 2.071 sum -1.012 15.193 11.404 19.024 Atomic orbital electron populations 1.22082 0.91891 1.02405 1.04557 1.22209 0.96864 0.95366 0.83958 1.22030 1.01149 0.92744 1.04570 1.46154 1.37167 1.15438 1.05996 1.73092 1.22468 1.26854 0.89987 1.24191 1.00203 0.92678 1.01256 1.22697 1.05108 1.03137 0.89440 1.21456 1.07861 0.93763 0.96084 1.17273 0.77191 0.81220 0.86863 1.90710 1.56848 1.71458 1.26782 1.45538 1.57929 1.18718 1.11275 1.23304 0.95649 0.90969 0.88372 1.22556 0.89843 0.87772 0.97128 1.46019 1.07101 1.34563 1.48875 1.19445 0.93414 1.03090 1.20420 0.89029 1.25711 0.95476 1.02427 1.02403 1.70048 1.02228 1.40888 1.47124 0.85025 0.77834 0.79133 0.77141 1.21298 1.22403 1.18760 1.23028 0.95654 0.86761 0.94723 0.88153 0.93653 0.90988 0.86697 0.93046 0.88221 0.90908 0.76404 0.79193 0.74426 0.88470 0.95584 0.95073 0.94264 0.91341 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.45 71.98 0.68 -2.40 16 2 C 0.12 2.78 3.55 44.99 0.16 2.94 16 3 C -0.15 -2.75 9.30 71.98 0.67 -2.08 16 4 N -0.26 -6.78 3.09 -314.29 -0.97 -7.75 16 5 N -0.29 -7.00 11.52 -57.14 -0.66 -7.66 16 6 C -0.01 -0.16 12.03 85.18 1.02 0.87 16 7 C -0.17 -3.44 10.50 22.65 0.24 -3.20 16 8 C -0.06 -1.71 6.96 40.79 0.28 -1.42 16 9 C 0.59 18.76 7.79 86.59 0.67 19.43 16 10 O -0.58 -22.43 14.05 -4.11 -0.06 -22.49 16 11 N -0.68 -19.97 5.35 -450.96 -2.41 -22.39 16 12 C 0.12 4.59 4.36 46.75 0.20 4.80 16 13 C 0.15 7.42 7.26 86.44 0.63 8.05 16 14 N -0.64 -32.13 3.70 -716.82 -2.65 -34.79 16 15 C -0.24 -13.05 10.70 84.03 0.90 -12.15 16 16 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 17 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 18 N -0.95 -58.50 11.48 21.65 0.25 -58.25 16 19 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 C 0.12 4.52 8.69 86.49 0.75 5.27 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 3.32 5.32 -2.39 -0.01 3.31 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 31 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.19 2.37 7.62 -2.91 -0.02 2.35 16 33 H 0.42 9.23 7.79 -92.71 -0.72 8.51 16 34 H 0.10 3.98 7.57 -2.39 -0.02 3.96 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.03 1.76 7.31 -2.38 -0.02 1.74 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 Total: -1.00 -73.61 329.19 2.54 -71.08 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.34 Total: 17.96 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.68 Total: 16.75 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -6.45 Total: -130.84 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.61 2.54 -71.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030366909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.025 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds