Wall clock time and date at job start Tue Mar 31 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 N 1.46500 * 109.46773 * 179.97438 * 3 2 1 5 5 N 1.28439 * 125.19213 * 274.52364 * 4 3 2 6 6 C 1.30864 * 110.92345 * 180.16491 * 5 4 3 7 7 C 1.39671 * 107.86373 * 359.61600 * 6 5 4 8 8 C 1.36602 * 125.18662 * 94.26342 * 4 3 2 9 9 C 1.47166 * 126.88496 * 359.97438 * 8 4 3 10 10 O 1.21626 * 119.99927 * 354.42280 * 9 8 4 11 11 N 1.34773 * 119.99977 * 174.42981 * 9 8 4 12 12 C 1.46495 * 119.99902 * 185.18046 * 11 9 8 13 13 C 1.53952 * 113.74227 * 253.73847 * 12 11 9 14 14 N 1.47811 * 86.03967 * 222.08447 * 13 12 11 15 15 C 1.36937 * 134.46111 * 204.64528 * 14 13 12 16 16 H 1.07995 * 120.00349 * 174.49410 * 15 14 13 17 17 C 1.38816 * 119.99513 * 354.48578 * 15 14 13 18 18 N 1.31620 * 119.99962 * 5.02079 * 17 15 14 19 19 Si 1.86797 * 119.99834 * 185.01533 * 17 15 14 20 20 H 1.48497 * 109.47139 * 94.99867 * 19 17 15 21 21 H 1.48497 * 109.47277 * 215.00030 * 19 17 15 22 22 H 1.48500 * 109.47073 * 335.00070 * 19 17 15 23 23 C 1.47588 * 91.05144 * 24.54917 * 14 13 12 24 24 H 1.08996 * 109.47313 * 60.00111 * 1 2 3 25 25 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47420 * 300.00124 * 1 2 3 27 27 H 1.09000 * 109.47420 * 239.99876 * 2 1 3 28 28 H 1.09003 * 109.47008 * 119.99673 * 2 1 3 29 29 H 1.09000 * 109.47082 * 59.99669 * 3 2 1 30 30 H 1.08996 * 109.46944 * 300.00115 * 3 2 1 31 31 H 1.08008 * 126.06803 * 179.87457 * 6 5 4 32 32 H 1.08003 * 127.31956 * 180.24847 * 7 6 5 33 33 H 0.97006 * 119.99741 * 5.18243 * 11 9 8 34 34 H 1.09000 * 112.94745 * 25.33068 * 12 11 9 35 35 H 1.09005 * 113.76791 * 336.35366 * 13 12 11 36 36 H 1.08994 * 113.76788 * 107.74631 * 13 12 11 37 37 H 0.97000 * 119.99825 * 179.97438 * 18 17 15 38 38 H 1.08995 * 113.77324 * 221.15606 * 23 14 13 39 39 H 1.09004 * 113.76756 * 89.74764 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.2448 1.3598 1.0473 6 6 5.5132 1.3886 0.7266 7 6 5.6014 1.4920 -0.6635 8 6 4.2926 1.5252 -1.1124 9 6 3.8402 1.6286 -2.5090 10 8 2.6557 1.5451 -2.7722 11 7 4.7384 1.8157 -3.4962 12 6 4.2813 2.0321 -4.8711 13 6 4.4971 0.8191 -5.7942 14 7 4.9362 1.7995 -6.8095 15 6 4.9807 1.8082 -8.1781 16 1 5.2732 2.7055 -8.7032 17 6 4.6499 0.6637 -8.8906 18 7 4.1990 -0.3984 -8.2572 19 14 4.8445 0.6310 -10.7481 20 1 6.1611 0.0396 -11.0975 21 1 3.7597 -0.1886 -11.3451 22 1 4.7676 2.0160 -11.2783 23 6 5.3050 2.7656 -5.7565 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 6.3443 1.3370 1.4144 32 1 6.4999 1.5361 -1.2611 33 1 5.6876 1.8071 -3.2963 34 1 3.2760 2.4503 -4.9238 35 1 5.2886 0.1481 -5.4601 36 1 3.5769 0.2966 -6.0554 37 1 3.9675 -1.1980 -8.7551 38 1 5.0286 3.7943 -5.9877 39 1 6.3343 2.6676 -5.4113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030377519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:50 Heat of formation + Delta-G solvation = 93.232400 kcal Electronic energy + Delta-G solvation = -21367.255023 eV Core-core repulsion = 18120.546382 eV Total energy + Delta-G solvation = -3246.708641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56203 -39.39329 -37.51536 -35.55595 -33.67164 -32.02890 -31.57531 -30.67859 -27.49247 -26.61651 -24.88824 -24.07303 -22.48360 -22.23129 -21.22876 -20.00735 -19.48995 -17.78899 -16.82533 -16.21500 -15.99307 -15.54614 -15.29511 -14.97436 -14.42455 -14.27848 -13.99942 -13.83395 -13.33215 -13.20503 -12.73868 -12.31096 -12.13968 -11.97111 -11.54488 -11.53068 -11.51153 -10.99052 -10.90632 -10.86592 -10.81475 -10.52383 -10.09606 -9.78721 -9.57858 -9.25559 -9.08082 -8.84938 -8.53125 -6.96025 -5.82516 -3.16001 1.29064 2.35064 2.56985 3.33130 3.35556 3.38695 3.44231 3.44939 4.40862 4.43651 4.66305 4.69906 4.86276 5.00174 5.07602 5.13869 5.26087 5.39071 5.41374 5.50855 5.52097 5.58109 5.66764 5.82759 5.92594 5.95582 6.06349 6.13700 6.34328 6.42714 6.48611 6.65200 6.68830 7.19071 7.27119 7.50207 7.70624 7.91539 8.02274 8.33726 8.98294 9.64760 10.50871 11.34593 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.003705 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.629740 B = 7555.953872 C = 8253.563508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.256 5.256 5 N -0.283 5.283 6 C -0.006 4.006 7 C -0.194 4.194 8 C -0.030 4.030 9 C 0.585 3.415 10 O -0.540 6.540 11 N -0.697 5.697 12 C 0.093 3.907 13 C 0.157 3.843 14 N -0.606 5.606 15 C -0.228 4.228 16 H 0.083 0.917 17 C -0.004 4.004 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.113 3.887 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.184 0.816 32 H 0.160 0.840 33 H 0.400 0.600 34 H 0.112 0.888 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.051 0.949 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 3.534 18.192 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.005 4.005 4 N -0.043 5.043 5 N -0.116 5.116 6 C -0.182 4.182 7 C -0.223 4.223 8 C -0.159 4.159 9 C 0.370 3.630 10 O -0.418 6.418 11 N -0.347 5.347 12 C -0.012 4.012 13 C 0.030 3.970 14 N -0.333 5.333 15 C -0.355 4.355 16 H 0.101 0.899 17 C -0.201 4.201 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.014 4.014 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.201 0.799 32 H 0.178 0.822 33 H 0.235 0.765 34 H 0.130 0.870 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.234 3.297 18.547 18.969 hybrid contribution 1.407 -0.178 -1.526 2.083 sum -0.827 3.120 17.021 17.324 Atomic orbital electron populations 1.21659 0.94022 1.02503 1.02286 1.21810 0.97076 0.95065 1.03274 1.22324 0.72482 0.99912 1.05736 1.45814 1.07646 1.48890 1.01960 1.73165 1.04332 1.19973 1.14095 1.23533 0.93453 1.06170 0.95046 1.22263 0.95689 1.08680 0.95630 1.21633 0.91440 1.12608 0.90187 1.16963 0.86075 0.77115 0.82871 1.90779 1.16346 1.50854 1.83829 1.45879 1.09307 1.71384 1.08159 1.24040 0.99694 1.00798 0.76633 1.22674 0.98945 0.91147 0.84194 1.45701 1.73069 1.14300 1.00245 1.18991 1.40614 0.97103 0.78831 0.89943 1.24842 1.01310 0.95711 0.98272 1.69844 1.48290 1.03680 1.34440 0.86093 0.77415 0.77490 0.84728 1.21545 1.21614 1.20450 1.22880 0.95343 0.94931 0.88234 0.91771 0.91948 0.92554 0.90726 0.91410 0.88796 0.86304 0.79860 0.82215 0.76547 0.87022 0.95097 0.90672 0.93477 0.93104 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.46 6.26 -26.73 -0.17 -1.63 16 3 C 0.12 1.33 5.86 -4.04 -0.02 1.31 16 4 N -0.26 -3.43 3.35 -57.14 -0.19 -3.62 16 5 N -0.28 -3.71 11.90 30.59 0.36 -3.34 16 6 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 7 C -0.19 -2.19 10.50 -38.99 -0.41 -2.60 16 8 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 9 C 0.59 9.30 7.78 -12.64 -0.10 9.20 16 10 O -0.54 -10.02 14.34 5.25 0.08 -9.94 16 11 N -0.70 -10.54 5.36 -56.49 -0.30 -10.85 16 12 C 0.09 1.74 4.36 -70.13 -0.31 1.44 16 13 C 0.16 3.68 7.26 -2.84 -0.02 3.66 16 14 N -0.61 -15.26 3.70 -177.83 -0.66 -15.92 16 15 C -0.23 -6.32 10.70 -15.06 -0.16 -6.48 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -27.17 11.48 55.49 0.64 -26.54 16 19 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.11 2.18 8.69 -2.96 -0.03 2.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.51 6.20 -51.93 -0.32 1.19 16 31 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.16 1.35 7.59 -52.48 -0.40 0.96 16 33 H 0.40 4.92 7.75 -40.82 -0.32 4.60 16 34 H 0.11 2.24 7.57 -51.93 -0.39 1.85 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 2.01 7.31 -51.93 -0.38 1.63 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -32.91 330.69 -7.42 -40.33 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.58 Total: 3.39 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.72 Total: 4.63 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.15 Total: -60.27 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.91 -7.42 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030377519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.561 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds