Wall clock time and date at job start Tue Mar 31 2020 01:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 N 1.46500 * 109.46773 * 179.97438 * 3 2 1 5 5 N 1.28439 * 125.19213 * 274.52364 * 4 3 2 6 6 C 1.30864 * 110.92345 * 180.16491 * 5 4 3 7 7 C 1.39671 * 107.86373 * 359.61600 * 6 5 4 8 8 C 1.36602 * 125.18662 * 94.26342 * 4 3 2 9 9 C 1.47166 * 126.88496 * 359.97438 * 8 4 3 10 10 O 1.21626 * 119.99927 * 354.42280 * 9 8 4 11 11 N 1.34773 * 119.99977 * 174.42981 * 9 8 4 12 12 C 1.46495 * 119.99902 * 185.18046 * 11 9 8 13 13 C 1.53952 * 113.74227 * 253.73847 * 12 11 9 14 14 N 1.47811 * 86.03967 * 222.08447 * 13 12 11 15 15 C 1.36937 * 134.46111 * 204.64528 * 14 13 12 16 16 H 1.07995 * 120.00349 * 174.49410 * 15 14 13 17 17 C 1.38816 * 119.99513 * 354.48578 * 15 14 13 18 18 N 1.31620 * 119.99962 * 5.02079 * 17 15 14 19 19 Si 1.86797 * 119.99834 * 185.01533 * 17 15 14 20 20 H 1.48497 * 109.47139 * 94.99867 * 19 17 15 21 21 H 1.48497 * 109.47277 * 215.00030 * 19 17 15 22 22 H 1.48500 * 109.47073 * 335.00070 * 19 17 15 23 23 C 1.47588 * 91.05144 * 24.54917 * 14 13 12 24 24 H 1.08996 * 109.47313 * 60.00111 * 1 2 3 25 25 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47420 * 300.00124 * 1 2 3 27 27 H 1.09000 * 109.47420 * 239.99876 * 2 1 3 28 28 H 1.09003 * 109.47008 * 119.99673 * 2 1 3 29 29 H 1.09000 * 109.47082 * 59.99669 * 3 2 1 30 30 H 1.08996 * 109.46944 * 300.00115 * 3 2 1 31 31 H 1.08008 * 126.06803 * 179.87457 * 6 5 4 32 32 H 1.08003 * 127.31956 * 180.24847 * 7 6 5 33 33 H 0.97006 * 119.99741 * 5.18243 * 11 9 8 34 34 H 1.09000 * 112.94745 * 25.33068 * 12 11 9 35 35 H 1.09005 * 113.76791 * 336.35366 * 13 12 11 36 36 H 1.08994 * 113.76788 * 107.74631 * 13 12 11 37 37 H 0.97000 * 119.99825 * 179.97438 * 18 17 15 38 38 H 1.08995 * 113.77324 * 221.15606 * 23 14 13 39 39 H 1.09004 * 113.76756 * 89.74764 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.2448 1.3598 1.0473 6 6 5.5132 1.3886 0.7266 7 6 5.6014 1.4920 -0.6635 8 6 4.2926 1.5252 -1.1124 9 6 3.8402 1.6286 -2.5090 10 8 2.6557 1.5451 -2.7722 11 7 4.7384 1.8157 -3.4962 12 6 4.2813 2.0321 -4.8711 13 6 4.4971 0.8191 -5.7942 14 7 4.9362 1.7995 -6.8095 15 6 4.9807 1.8082 -8.1781 16 1 5.2732 2.7055 -8.7032 17 6 4.6499 0.6637 -8.8906 18 7 4.1990 -0.3984 -8.2572 19 14 4.8445 0.6310 -10.7481 20 1 6.1611 0.0396 -11.0975 21 1 3.7597 -0.1886 -11.3451 22 1 4.7676 2.0160 -11.2783 23 6 5.3050 2.7656 -5.7565 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 6.3443 1.3370 1.4144 32 1 6.4999 1.5361 -1.2611 33 1 5.6876 1.8071 -3.2963 34 1 3.2760 2.4503 -4.9238 35 1 5.2886 0.1481 -5.4601 36 1 3.5769 0.2966 -6.0554 37 1 3.9675 -1.1980 -8.7551 38 1 5.0286 3.7943 -5.9877 39 1 6.3343 2.6676 -5.4113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030377519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:48 Heat of formation + Delta-G solvation = 70.527924 kcal Electronic energy + Delta-G solvation = -21368.239563 eV Core-core repulsion = 18120.546382 eV Total energy + Delta-G solvation = -3247.693181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.51540 -40.82420 -39.11875 -36.46302 -35.19269 -33.88152 -32.47381 -31.81062 -29.36725 -27.48523 -26.62839 -25.62780 -23.87617 -23.09586 -22.33481 -21.44095 -20.78664 -18.95226 -18.76366 -17.55177 -17.05489 -16.94833 -16.66873 -16.21100 -15.78255 -15.59706 -15.54938 -14.83880 -14.58133 -14.26009 -14.11371 -13.71292 -13.37158 -13.22384 -13.08838 -12.96828 -12.82745 -12.65406 -12.35668 -12.31610 -11.95988 -11.85796 -11.78335 -11.52268 -11.11343 -10.89310 -10.32611 -10.01435 -9.91910 -8.97029 -7.93403 -5.27910 0.23065 1.36905 1.46835 1.48677 1.57707 1.67944 2.14908 2.16511 2.49753 3.23368 3.37288 3.55933 3.60402 3.81033 3.83219 4.02312 4.14941 4.22901 4.29395 4.45184 4.50105 4.52779 4.67418 4.74676 4.76589 4.88665 4.91242 5.01370 5.10627 5.11465 5.22555 5.27900 5.48386 5.56798 5.65380 5.76845 5.88347 6.45368 6.87625 7.05747 7.13779 7.57859 8.50542 9.23983 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.003705 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.629740 B = 7555.953872 C = 8253.563508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.113 3.887 4 N -0.266 5.266 5 N -0.297 5.297 6 C -0.004 4.004 7 C -0.176 4.176 8 C -0.059 4.059 9 C 0.586 3.414 10 O -0.574 6.574 11 N -0.685 5.685 12 C 0.124 3.876 13 C 0.154 3.846 14 N -0.638 5.638 15 C -0.236 4.236 16 H 0.092 0.908 17 C -0.067 4.067 18 N -0.955 5.955 19 Si 0.981 3.019 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.263 1.263 23 C 0.123 3.877 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.221 0.779 32 H 0.191 0.809 33 H 0.417 0.583 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.030 0.970 37 H 0.248 0.752 38 H 0.068 0.932 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 4.835 19.545 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.053 5.053 5 N -0.130 5.130 6 C -0.179 4.179 7 C -0.205 4.205 8 C -0.187 4.187 9 C 0.373 3.627 10 O -0.454 6.454 11 N -0.336 5.336 12 C 0.018 3.982 13 C 0.027 3.973 14 N -0.366 5.366 15 C -0.364 4.364 16 H 0.110 0.890 17 C -0.260 4.260 18 N -0.603 5.603 19 Si 0.808 3.192 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.188 1.188 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.237 0.763 32 H 0.208 0.792 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.530 4.641 19.937 20.477 hybrid contribution 0.924 -0.556 -1.822 2.117 sum 0.394 4.084 18.116 18.574 Atomic orbital electron populations 1.21646 0.92513 1.03089 1.02817 1.21734 0.98354 0.94542 1.01867 1.22374 0.72229 1.00136 1.05922 1.45970 1.08099 1.49372 1.01907 1.73170 1.05392 1.20310 1.14128 1.24208 0.93592 1.04572 0.95570 1.22712 0.95483 1.06192 0.96148 1.21470 0.92787 1.15286 0.89135 1.17253 0.85539 0.76063 0.83878 1.90769 1.17897 1.52183 1.84509 1.45538 1.10237 1.71332 1.06509 1.23291 0.99237 0.97638 0.78047 1.22556 0.96760 0.92267 0.85695 1.46020 1.73927 1.16139 1.00480 1.19443 1.39062 0.97313 0.80558 0.89049 1.25708 1.01849 0.95630 1.02805 1.70048 1.50187 1.04183 1.35875 0.85029 0.76823 0.77925 0.79385 1.21288 1.22404 1.18764 1.23031 0.96705 0.94602 0.85854 0.92742 0.91353 0.90475 0.93711 0.91020 0.86695 0.87914 0.76275 0.79184 0.74478 0.88466 0.95566 0.95127 0.94263 0.91380 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.13 -2.80 6.26 30.60 0.19 -2.60 16 3 C 0.11 2.60 5.86 86.38 0.51 3.11 16 4 N -0.27 -6.87 3.35 -334.69 -1.12 -7.99 16 5 N -0.30 -7.16 11.90 -57.14 -0.68 -7.84 16 6 C 0.00 -0.08 12.03 85.18 1.02 0.95 16 7 C -0.18 -3.45 10.50 22.65 0.24 -3.21 16 8 C -0.06 -1.55 6.96 40.79 0.28 -1.27 16 9 C 0.59 18.46 7.78 86.59 0.67 19.13 16 10 O -0.57 -21.93 14.34 -4.11 -0.06 -21.99 16 11 N -0.68 -19.85 5.36 -450.88 -2.42 -22.27 16 12 C 0.12 4.61 4.36 46.75 0.20 4.81 16 13 C 0.15 7.41 7.26 86.44 0.63 8.04 16 14 N -0.64 -32.11 3.70 -716.54 -2.65 -34.76 16 15 C -0.24 -13.05 10.70 84.03 0.90 -12.15 16 16 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 17 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 18 N -0.95 -58.50 11.48 21.65 0.25 -58.25 16 19 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 C 0.12 4.51 8.69 86.49 0.75 5.26 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 2.70 6.20 -2.39 -0.01 2.69 16 31 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.19 2.38 7.59 -2.91 -0.02 2.36 16 33 H 0.42 9.14 7.75 -92.70 -0.72 8.42 16 34 H 0.10 3.96 7.57 -2.39 -0.02 3.94 16 35 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.03 1.72 7.31 -2.39 -0.02 1.71 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.14 8.11 -2.38 -0.02 2.13 16 Total: -1.00 -73.49 330.69 2.27 -71.22 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.34 Total: 17.41 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.58 Total: 16.93 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -6.62 Total: -131.11 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.49 2.27 -71.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030377519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.753 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds