Wall clock time and date at job start Tue Mar 31 2020 00:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46982 * 2 1 4 4 N 1.30443 * 125.98569 * 269.99548 * 3 2 1 5 5 N 1.39940 * 108.89740 * 180.02562 * 4 3 2 6 6 C 1.46498 * 125.75730 * 180.02562 * 5 4 3 7 7 C 1.34269 * 108.48955 * 359.75458 * 5 4 3 8 8 C 1.38047 * 107.41302 * 0.39244 * 7 5 4 9 9 C 1.47432 * 126.41064 * 179.87502 * 8 7 5 10 10 O 1.21608 * 119.99684 * 179.69236 * 9 8 7 11 11 N 1.34775 * 119.99874 * 359.68229 * 9 8 7 12 12 C 1.46500 * 119.99438 * 180.02562 * 11 9 8 13 13 C 1.53498 * 114.20367 * 155.00573 * 12 11 9 14 14 N 1.47065 * 87.98675 * 87.51602 * 13 12 11 15 15 C 1.36935 * 136.05778 * 207.07950 * 14 13 12 16 16 H 1.07997 * 119.99961 * 6.77313 * 15 14 13 17 17 C 1.38812 * 119.99962 * 186.76980 * 15 14 13 18 18 N 1.31618 * 119.99992 * 172.26235 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 352.26666 * 17 15 14 20 20 H 1.48493 * 109.47463 * 175.35996 * 19 17 15 21 21 H 1.48510 * 109.46810 * 295.35961 * 19 17 15 22 22 H 1.48498 * 109.47153 * 55.35226 * 19 17 15 23 23 C 1.47070 * 87.88470 * 27.34556 * 14 13 12 24 24 H 1.09000 * 109.47072 * 60.00019 * 1 2 3 25 25 H 1.09005 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46973 * 300.00121 * 1 2 3 27 27 H 1.08996 * 109.46973 * 239.99879 * 2 1 3 28 28 H 1.09000 * 109.47072 * 119.99980 * 2 1 3 29 29 H 1.09007 * 109.46986 * 89.97759 * 6 5 4 30 30 H 1.08997 * 109.47242 * 209.97869 * 6 5 4 31 31 H 1.08996 * 109.46951 * 329.97818 * 6 5 4 32 32 H 1.07998 * 126.29137 * 180.24358 * 7 5 4 33 33 H 0.96999 * 120.00385 * 0.02562 * 11 9 8 34 34 H 1.09000 * 113.28874 * 21.93582 * 12 11 9 35 35 H 1.09003 * 113.46903 * 332.73508 * 13 12 11 36 36 H 1.09002 * 113.47097 * 202.29943 * 13 12 11 37 37 H 0.97005 * 119.99783 * 4.88000 * 18 17 15 38 38 H 1.08996 * 113.47141 * 87.43428 * 23 14 13 39 39 H 1.09002 * 113.46180 * 217.88172 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1434 -1.0555 5 7 2.7342 3.4044 -0.6443 6 6 3.1232 4.5053 -1.5291 7 6 2.7403 3.4371 0.6980 8 6 2.3096 2.2034 1.1432 9 6 2.1608 1.7833 2.5486 10 8 1.7642 0.6637 2.8097 11 7 2.4644 2.6400 3.5437 12 6 2.3169 2.2223 4.9402 13 6 3.2150 2.9856 5.9235 14 7 2.1514 3.9956 6.0302 15 6 2.0869 5.3331 6.3166 16 1 2.9957 5.9061 6.4269 17 6 0.8536 5.9525 6.4651 18 7 0.7888 7.1970 6.8886 19 14 -0.7143 5.0197 6.0640 20 1 -1.8908 5.8571 6.4101 21 1 -0.7432 4.7006 4.6139 22 1 -0.7553 3.7598 6.8489 23 6 1.1867 2.9356 5.7005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2507 5.1209 -1.7482 30 1 3.8834 5.1138 -1.0394 31 1 3.5247 4.1004 -2.4580 32 1 3.0311 4.2738 1.3157 33 1 2.7804 3.5330 3.3354 34 1 2.3306 1.1401 5.0700 35 1 4.1305 3.3655 5.4701 36 1 3.3968 2.4467 6.8534 37 1 1.6035 7.7044 7.0293 38 1 0.8338 2.3835 6.5715 39 1 0.3743 3.2730 5.0569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030488525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:50 Heat of formation + Delta-G solvation = 100.808225 kcal Electronic energy + Delta-G solvation = -21756.630937 eV Core-core repulsion = 18510.250808 eV Total energy + Delta-G solvation = -3246.380129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.48035 -39.44544 -37.72690 -34.76809 -33.42065 -32.27379 -31.71403 -30.28986 -27.85224 -26.94655 -25.36440 -24.02335 -22.87375 -22.06991 -20.45237 -19.64259 -19.27029 -17.62146 -17.48051 -16.13441 -15.83194 -15.72359 -14.94186 -14.76924 -14.35809 -14.15959 -13.90801 -13.74017 -13.34356 -13.17950 -13.02486 -12.94701 -12.75007 -12.07702 -11.96888 -11.47636 -11.35965 -11.13382 -11.02692 -10.73817 -10.55987 -10.30107 -9.58664 -9.47721 -9.44566 -9.22639 -8.89243 -8.76431 -8.38697 -7.18597 -6.35900 -3.26936 1.46811 2.17039 2.23054 3.42884 3.43276 3.53472 3.63115 3.66724 4.21723 4.54119 4.56800 4.73206 4.74905 4.86637 5.08154 5.12164 5.16339 5.27592 5.39447 5.40631 5.44904 5.59178 5.65562 5.88909 5.96616 5.97947 6.16832 6.21855 6.27203 6.30155 6.34080 6.45491 6.51805 6.68274 7.04284 7.08176 7.51351 7.94260 8.19154 8.59164 8.93424 9.46521 10.33204 11.16748 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.005138 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.681118 B = 5448.056616 C = 5913.687644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.136 3.864 4 N -0.305 5.305 5 N -0.364 5.364 6 C 0.097 3.903 7 C 0.102 3.898 8 C -0.284 4.284 9 C 0.594 3.406 10 O -0.548 6.548 11 N -0.695 5.695 12 C 0.102 3.898 13 C 0.113 3.887 14 N -0.629 5.629 15 C -0.306 4.306 16 H 0.082 0.918 17 C -0.023 4.023 18 N -0.934 5.934 19 Si 1.070 2.930 20 H -0.296 1.296 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.084 3.916 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -9.449 -15.820 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.032 4.032 4 N -0.126 5.126 5 N -0.142 5.142 6 C -0.044 4.044 7 C -0.049 4.049 8 C -0.299 4.299 9 C 0.382 3.618 10 O -0.427 6.427 11 N -0.344 5.344 12 C -0.004 4.004 13 C -0.014 4.014 14 N -0.358 5.358 15 C -0.433 4.433 16 H 0.100 0.900 17 C -0.222 4.222 18 N -0.576 5.576 19 Si 0.903 3.097 20 H -0.224 1.224 21 H -0.223 1.223 22 H -0.213 1.213 23 C -0.043 4.043 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.202 0.798 33 H 0.236 0.764 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.213 -9.671 -16.938 19.767 hybrid contribution 1.898 0.785 0.904 2.243 sum 5.110 -8.886 -16.035 19.031 Atomic orbital electron populations 1.21619 0.94046 1.01943 1.02077 1.20103 0.96487 0.88033 1.03915 1.22441 0.95174 0.96872 0.88705 1.77143 1.22269 0.90488 1.22716 1.48278 1.49607 1.11531 1.04762 1.21982 1.01561 0.86199 0.94612 1.23193 0.97650 0.98889 0.85214 1.20292 1.19530 0.95398 0.94644 1.17203 0.76712 0.84527 0.83357 1.90702 1.47399 1.20311 1.84242 1.45330 1.67233 1.16766 1.05109 1.22428 0.98820 0.98568 0.80607 1.22719 0.93440 0.89705 0.95526 1.46117 1.02573 1.03164 1.83931 1.20099 0.95336 0.80547 1.47277 0.90023 1.25697 1.00142 0.98078 0.98236 1.70935 1.30588 1.10067 1.46020 0.83682 0.75965 0.74207 0.75820 1.22388 1.22265 1.21321 1.23284 0.94603 0.89915 0.96477 0.93134 0.91975 0.91990 0.90901 0.88003 0.90242 0.88988 0.88993 0.79842 0.76356 0.87713 0.93371 0.93096 0.92959 0.92777 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.30 16 2 C -0.05 -0.59 5.97 -27.88 -0.17 -0.75 16 3 C 0.14 1.96 6.52 -82.02 -0.53 1.43 16 4 N -0.31 -4.27 12.50 33.89 0.42 -3.85 16 5 N -0.36 -4.21 3.98 -67.60 -0.27 -4.48 16 6 C 0.10 0.65 11.44 59.85 0.68 1.34 16 7 C 0.10 1.23 10.99 -16.56 -0.18 1.05 16 8 C -0.28 -4.19 6.13 -105.06 -0.64 -4.84 16 9 C 0.59 9.92 7.81 -12.52 -0.10 9.83 16 10 O -0.55 -10.22 14.51 5.27 0.08 -10.15 16 11 N -0.70 -11.48 5.39 -54.55 -0.29 -11.78 16 12 C 0.10 1.81 4.61 -67.67 -0.31 1.50 16 13 C 0.11 2.11 8.44 -8.51 -0.07 2.03 16 14 N -0.63 -14.80 3.70 -184.60 -0.68 -15.48 16 15 C -0.31 -8.51 11.08 -15.06 -0.17 -8.68 16 16 H 0.08 2.38 8.05 -52.49 -0.42 1.95 16 17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -29.03 13.70 55.49 0.76 -28.27 16 19 Si 1.07 27.01 25.13 -169.99 -4.27 22.74 16 20 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.29 -7.14 6.65 56.52 0.38 -6.76 16 22 H -0.29 -6.82 6.13 56.52 0.35 -6.47 16 23 C 0.08 1.78 5.54 -8.36 -0.05 1.73 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.40 6.55 -51.93 -0.34 1.06 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.18 1.70 7.46 -52.49 -0.39 1.30 16 33 H 0.40 6.22 7.68 -40.82 -0.31 5.90 16 34 H 0.11 1.75 7.45 -51.93 -0.39 1.36 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.96 8.73 -40.82 -0.36 7.60 16 38 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 39 H 0.05 1.21 4.65 -51.93 -0.24 0.97 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -35.00 324.30 -6.17 -41.17 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.54 Total: 2.61 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.27 Total: 2.59 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.06 Total: -63.85 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 27.01 SS G_CDS: -4.27 Total: 22.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.00 -6.17 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030488525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.975 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds