Wall clock time and date at job start Tue Mar 31 2020 00:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46982 * 2 1 4 4 N 1.30443 * 125.98569 * 269.99548 * 3 2 1 5 5 N 1.39940 * 108.89740 * 180.02562 * 4 3 2 6 6 C 1.46498 * 125.75730 * 180.02562 * 5 4 3 7 7 C 1.34269 * 108.48955 * 359.75458 * 5 4 3 8 8 C 1.38047 * 107.41302 * 0.39244 * 7 5 4 9 9 C 1.47432 * 126.41064 * 179.87502 * 8 7 5 10 10 O 1.21608 * 119.99684 * 179.69236 * 9 8 7 11 11 N 1.34775 * 119.99874 * 359.68229 * 9 8 7 12 12 C 1.46500 * 119.99438 * 180.02562 * 11 9 8 13 13 C 1.53498 * 114.20367 * 155.00573 * 12 11 9 14 14 N 1.47065 * 87.98675 * 87.51602 * 13 12 11 15 15 C 1.36935 * 136.05778 * 207.07950 * 14 13 12 16 16 H 1.07997 * 119.99961 * 6.77313 * 15 14 13 17 17 C 1.38812 * 119.99962 * 186.76980 * 15 14 13 18 18 N 1.31618 * 119.99992 * 172.26235 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 352.26666 * 17 15 14 20 20 H 1.48493 * 109.47463 * 175.35996 * 19 17 15 21 21 H 1.48510 * 109.46810 * 295.35961 * 19 17 15 22 22 H 1.48498 * 109.47153 * 55.35226 * 19 17 15 23 23 C 1.47070 * 87.88470 * 27.34556 * 14 13 12 24 24 H 1.09000 * 109.47072 * 60.00019 * 1 2 3 25 25 H 1.09005 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46973 * 300.00121 * 1 2 3 27 27 H 1.08996 * 109.46973 * 239.99879 * 2 1 3 28 28 H 1.09000 * 109.47072 * 119.99980 * 2 1 3 29 29 H 1.09007 * 109.46986 * 89.97759 * 6 5 4 30 30 H 1.08997 * 109.47242 * 209.97869 * 6 5 4 31 31 H 1.08996 * 109.46951 * 329.97818 * 6 5 4 32 32 H 1.07998 * 126.29137 * 180.24358 * 7 5 4 33 33 H 0.96999 * 120.00385 * 0.02562 * 11 9 8 34 34 H 1.09000 * 113.28874 * 21.93582 * 12 11 9 35 35 H 1.09003 * 113.46903 * 332.73508 * 13 12 11 36 36 H 1.09002 * 113.47097 * 202.29943 * 13 12 11 37 37 H 0.97005 * 119.99783 * 4.88000 * 18 17 15 38 38 H 1.08996 * 113.47141 * 87.43428 * 23 14 13 39 39 H 1.09002 * 113.46180 * 217.88172 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1434 -1.0555 5 7 2.7342 3.4044 -0.6443 6 6 3.1232 4.5053 -1.5291 7 6 2.7403 3.4371 0.6980 8 6 2.3096 2.2034 1.1432 9 6 2.1608 1.7833 2.5486 10 8 1.7642 0.6637 2.8097 11 7 2.4644 2.6400 3.5437 12 6 2.3169 2.2223 4.9402 13 6 3.2150 2.9856 5.9235 14 7 2.1514 3.9956 6.0302 15 6 2.0869 5.3331 6.3166 16 1 2.9957 5.9061 6.4269 17 6 0.8536 5.9525 6.4651 18 7 0.7888 7.1970 6.8886 19 14 -0.7143 5.0197 6.0640 20 1 -1.8908 5.8571 6.4101 21 1 -0.7432 4.7006 4.6139 22 1 -0.7553 3.7598 6.8489 23 6 1.1867 2.9356 5.7005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2507 5.1209 -1.7482 30 1 3.8834 5.1138 -1.0394 31 1 3.5247 4.1004 -2.4580 32 1 3.0311 4.2738 1.3157 33 1 2.7804 3.5330 3.3354 34 1 2.3306 1.1401 5.0700 35 1 4.1305 3.3655 5.4701 36 1 3.3968 2.4467 6.8534 37 1 1.6035 7.7044 7.0293 38 1 0.8338 2.3835 6.5715 39 1 0.3743 3.2730 5.0569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030488525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:49 Heat of formation + Delta-G solvation = 74.776628 kcal Electronic energy + Delta-G solvation = -21757.759752 eV Core-core repulsion = 18510.250808 eV Total energy + Delta-G solvation = -3247.508944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.47258 -40.88560 -39.18154 -35.72482 -35.01091 -34.10109 -32.64413 -31.40795 -29.62299 -27.80685 -26.98152 -25.24716 -24.24085 -23.31310 -21.72998 -21.04468 -20.48360 -19.47719 -18.71262 -17.41920 -17.16084 -16.76264 -16.35410 -15.92429 -15.80602 -15.42800 -15.27218 -15.15008 -15.02721 -14.52329 -14.06646 -13.79019 -13.53238 -13.48885 -13.26266 -12.89095 -12.75567 -12.45877 -12.43169 -12.10428 -12.00830 -11.75850 -11.33834 -11.21733 -11.00491 -10.82681 -10.40638 -9.99382 -9.60693 -9.18030 -8.61255 -5.43389 0.48461 1.08718 1.40613 1.43099 1.45913 1.65496 2.24905 2.43561 2.52055 2.97490 3.26869 3.33804 3.65423 3.68876 3.99134 4.17268 4.25904 4.34886 4.38474 4.41923 4.43183 4.48393 4.63379 4.68153 4.68343 4.70928 4.74231 4.82296 4.99556 5.05197 5.19713 5.21465 5.31948 5.50334 5.65396 5.86485 5.98033 6.49835 6.69125 6.73409 7.31988 7.35312 8.30108 8.94559 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.005138 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.681118 B = 5448.056616 C = 5913.687644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C 0.124 3.876 4 N -0.324 5.324 5 N -0.358 5.358 6 C 0.086 3.914 7 C 0.116 3.884 8 C -0.317 4.317 9 C 0.596 3.404 10 O -0.572 6.572 11 N -0.695 5.695 12 C 0.124 3.876 13 C 0.118 3.882 14 N -0.654 5.654 15 C -0.281 4.281 16 H 0.059 0.941 17 C -0.079 4.079 18 N -0.974 5.974 19 Si 1.105 2.895 20 H -0.309 1.309 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.074 3.926 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.212 0.788 33 H 0.407 0.593 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -10.584 -17.189 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.043 4.043 4 N -0.146 5.146 5 N -0.135 5.135 6 C -0.053 4.053 7 C -0.038 4.038 8 C -0.331 4.331 9 C 0.386 3.614 10 O -0.453 6.453 11 N -0.344 5.344 12 C 0.017 3.983 13 C -0.008 4.008 14 N -0.383 5.383 15 C -0.409 4.409 16 H 0.077 0.923 17 C -0.272 4.272 18 N -0.620 5.620 19 Si 0.934 3.066 20 H -0.238 1.238 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.053 4.053 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.229 0.771 33 H 0.242 0.758 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.907 -10.847 -18.349 21.671 hybrid contribution 1.830 1.141 1.246 2.491 sum 5.737 -9.706 -17.103 20.485 Atomic orbital electron populations 1.21563 0.93663 1.02858 1.00940 1.20112 0.96761 0.87601 1.04007 1.22681 0.95299 0.97549 0.88798 1.77091 1.22949 0.91667 1.22881 1.48691 1.48043 1.11570 1.05229 1.22417 1.02939 0.85260 0.94707 1.23571 0.95843 0.98618 0.85719 1.20261 1.22219 0.96963 0.93707 1.17442 0.75885 0.84074 0.84033 1.90682 1.48524 1.21326 1.84722 1.45313 1.67347 1.17089 1.04656 1.22191 0.96270 0.99028 0.80777 1.22901 0.92983 0.88232 0.96650 1.46167 1.05520 1.02670 1.83990 1.19987 0.94129 0.82723 1.44053 0.92335 1.26715 1.03077 0.98238 0.99157 1.71019 1.29990 1.11423 1.49528 0.83235 0.72831 0.73896 0.76622 1.23755 1.20950 1.19092 1.23506 0.95007 0.89539 0.97200 0.92864 0.90083 0.94342 0.89299 0.89291 0.89108 0.86162 0.88064 0.77100 0.75786 0.86023 0.92035 0.91025 0.94234 0.91768 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.12 5.97 29.85 0.18 -0.94 16 3 C 0.12 3.44 6.52 43.51 0.28 3.73 16 4 N -0.32 -8.55 12.50 -46.68 -0.58 -9.13 16 5 N -0.36 -7.40 3.98 -367.77 -1.46 -8.87 16 6 C 0.09 0.89 11.44 127.77 1.46 2.35 16 7 C 0.12 2.52 10.99 84.27 0.93 3.44 16 8 C -0.32 -8.89 6.13 -20.15 -0.12 -9.02 16 9 C 0.60 19.01 7.81 86.67 0.68 19.69 16 10 O -0.57 -20.73 14.51 -4.06 -0.06 -20.79 16 11 N -0.69 -21.40 5.39 -444.76 -2.40 -23.80 16 12 C 0.12 4.06 4.61 45.55 0.21 4.27 16 13 C 0.12 4.04 8.44 83.18 0.70 4.75 16 14 N -0.65 -29.57 3.70 -737.96 -2.73 -32.29 16 15 C -0.28 -15.53 11.08 84.03 0.93 -14.60 16 16 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 17 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 18 N -0.97 -61.75 13.70 21.65 0.30 -61.45 16 19 Si 1.11 54.35 25.13 68.60 1.72 56.08 16 20 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 21 H -0.28 -13.11 6.65 99.48 0.66 -12.45 16 22 H -0.27 -11.97 6.13 99.48 0.61 -11.36 16 23 C 0.07 2.95 5.54 83.27 0.46 3.41 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 2.41 6.55 -2.39 -0.02 2.39 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.21 3.21 7.46 -2.91 -0.02 3.19 16 33 H 0.41 11.62 7.68 -92.71 -0.71 10.91 16 34 H 0.12 3.67 7.45 -2.39 -0.02 3.66 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.25 15.68 8.73 -92.70 -0.81 14.87 16 38 H 0.06 2.47 7.73 -2.39 -0.02 2.45 16 39 H 0.04 1.74 4.65 -2.39 -0.01 1.73 16 Total: -1.00 -75.86 324.30 1.85 -74.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.17 Total: 15.70 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.89 Total: 10.55 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -6.87 Total: -135.54 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.72 Total: 56.08 kcal Total: -75.86 1.85 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030488525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.786 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds