Wall clock time and date at job start Tue Mar 31 2020 00:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.30452 * 125.99019 * 270.14731 * 4 3 2 6 6 N 1.39937 * 108.89475 * 180.26008 * 5 4 3 7 7 H 0.96997 * 125.74934 * 179.73000 * 6 5 4 8 8 C 1.34254 * 108.49367 * 359.75076 * 6 5 4 9 9 C 1.38048 * 107.41763 * 0.02562 * 8 6 5 10 10 C 1.47432 * 126.41355 * 179.97438 * 9 8 6 11 11 O 1.21608 * 119.99684 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99874 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99438 * 180.02562 * 12 10 9 14 14 C 1.53498 * 114.20367 * 155.00573 * 13 12 10 15 15 N 1.47065 * 87.98675 * 87.51602 * 14 13 12 16 16 C 1.36935 * 136.05778 * 207.07950 * 15 14 13 17 17 H 1.07997 * 119.99961 * 6.77313 * 16 15 14 18 18 C 1.38812 * 119.99962 * 186.76980 * 16 15 14 19 19 N 1.31618 * 119.99992 * 172.26235 * 18 16 15 20 20 Si 1.86794 * 120.00220 * 352.26666 * 18 16 15 21 21 H 1.48493 * 109.47463 * 175.35996 * 20 18 16 22 22 H 1.48510 * 109.46810 * 295.35961 * 20 18 16 23 23 H 1.48498 * 109.47153 * 55.35226 * 20 18 16 24 24 C 1.47070 * 87.88470 * 27.34556 * 15 14 13 25 25 H 1.09001 * 109.47073 * 59.99718 * 1 2 3 26 26 H 1.09003 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47412 * 300.00022 * 1 2 3 28 28 H 1.08998 * 109.47412 * 239.99978 * 2 1 3 29 29 H 1.08997 * 109.47351 * 119.99870 * 2 1 3 30 30 H 1.09006 * 109.46829 * 60.00040 * 3 2 1 31 31 H 1.09001 * 109.47280 * 300.00155 * 3 2 1 32 32 H 1.07997 * 126.28992 * 179.97438 * 8 6 5 33 33 H 0.96999 * 120.00385 * 0.02562 * 12 10 9 34 34 H 1.09000 * 113.28874 * 21.93582 * 13 12 10 35 35 H 1.09003 * 113.46903 * 332.73508 * 14 13 12 36 36 H 1.09002 * 113.47097 * 202.29943 * 14 13 12 37 37 H 0.97005 * 119.99783 * 4.88000 * 19 18 16 38 38 H 1.08996 * 113.47141 * 87.43428 * 24 15 14 39 39 H 1.09002 * 113.46180 * 217.88172 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4400 1.0565 6 7 5.6508 1.4470 0.6457 7 1 6.4236 1.4506 1.2319 8 6 5.6842 1.4484 -0.6964 9 6 4.3777 1.4429 -1.1423 10 6 3.9326 1.4428 -2.5478 11 8 2.7450 1.4380 -2.8094 12 7 4.8418 1.4478 -3.5426 13 6 4.3994 1.4482 -4.9392 14 6 5.4167 2.0453 -5.9214 15 7 6.0192 0.7081 -6.0295 16 6 7.2606 0.2062 -6.3160 17 1 8.1015 0.8751 -6.4252 18 6 7.4383 -1.1623 -6.4662 19 7 8.5919 -1.6336 -6.8898 20 14 6.0402 -2.3350 -6.0671 21 1 6.4425 -3.7215 -6.4147 22 1 5.7289 -2.2588 -4.6170 23 1 4.8376 -1.9569 -6.8520 24 6 4.7001 0.1469 -5.7010 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.5703 1.4538 -1.3138 33 1 5.7891 1.4512 -3.3339 34 1 3.3825 1.8185 -5.0690 35 1 6.0774 2.7836 -5.4668 36 1 4.9684 2.3959 -6.8511 37 1 9.3398 -1.0319 -7.0294 38 1 4.0628 -0.0030 -6.5724 39 1 4.7502 -0.7322 -5.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030589823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:36 Heat of formation + Delta-G solvation = 87.853330 kcal Electronic energy + Delta-G solvation = -21679.787044 eV Core-core repulsion = 18432.845149 eV Total energy + Delta-G solvation = -3246.941895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50160 -39.45261 -37.72860 -35.27069 -33.41114 -32.21097 -31.66900 -30.29395 -27.79217 -27.11180 -25.37689 -23.69669 -22.33956 -21.91918 -20.50278 -19.63320 -19.41949 -18.35277 -17.49116 -16.44908 -15.78135 -15.27960 -15.14638 -14.81841 -14.49111 -14.22083 -13.95317 -13.65980 -13.37332 -13.25225 -13.03220 -12.95911 -12.02846 -11.99561 -11.56439 -11.37183 -11.28437 -11.07346 -11.00962 -10.59937 -10.56504 -10.31299 -9.65903 -9.57331 -9.48855 -9.23575 -8.92387 -8.90077 -8.43000 -7.19624 -6.36732 -3.27906 1.44119 2.11444 2.57426 3.41857 3.42276 3.50902 3.60315 3.64901 4.38201 4.56027 4.57106 4.72021 4.98341 5.09282 5.12589 5.17708 5.27973 5.38616 5.39591 5.50955 5.72642 5.79805 5.86317 5.88926 5.95466 6.02731 6.20496 6.25122 6.26540 6.32627 6.32856 6.41179 6.47228 6.94666 7.02889 7.06950 7.42553 7.91451 8.18421 8.56127 8.92584 9.45656 10.32184 11.15924 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.004858 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.284978 B = 5762.285274 C = 6044.254421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.043 4.043 4 C 0.138 3.862 5 N -0.302 5.302 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.107 3.893 9 C -0.283 4.283 10 C 0.593 3.407 11 O -0.546 6.546 12 N -0.695 5.695 13 C 0.102 3.898 14 C 0.113 3.887 15 N -0.629 5.629 16 C -0.307 4.307 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.934 5.934 20 Si 1.070 2.930 21 H -0.296 1.296 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.084 3.916 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.188 0.812 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 7.516 14.751 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.083 4.083 4 C -0.030 4.030 5 N -0.124 5.124 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.046 4.046 9 C -0.298 4.298 10 C 0.381 3.619 11 O -0.425 6.425 12 N -0.344 5.344 13 C -0.004 4.004 14 C -0.014 4.014 15 N -0.358 5.358 16 C -0.433 4.433 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.576 5.576 20 Si 0.903 3.097 21 H -0.224 1.224 22 H -0.223 1.223 23 H -0.213 1.213 24 C -0.043 4.043 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.205 0.795 33 H 0.237 0.763 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.747 5.823 15.743 19.931 hybrid contribution 1.754 1.553 -0.650 2.431 sum -8.993 7.376 15.093 19.055 Atomic orbital electron populations 1.21729 0.95397 1.01608 1.01841 1.21373 0.95911 0.95480 1.02289 1.20216 0.85296 0.98695 1.04057 1.22456 0.97055 0.94853 0.88656 1.77132 0.86244 1.26562 1.22511 1.46084 1.07796 1.57361 1.05481 0.71229 1.23269 0.99328 0.96341 0.85628 1.20346 0.92050 1.22610 0.94764 1.17203 0.85675 0.75701 0.83369 1.90709 1.16196 1.51365 1.84213 1.45330 1.09644 1.74303 1.05126 1.22432 0.98596 0.98823 0.80581 1.22719 0.92721 0.90421 0.95531 1.46120 1.04129 1.01579 1.83958 1.20102 0.82896 0.93004 1.47345 0.90011 1.25698 1.03036 0.95184 0.98200 1.70934 1.02800 1.37884 1.45975 0.83684 0.74408 0.75773 0.75813 1.22376 1.22257 1.21315 1.23282 0.88142 0.96364 0.96477 0.92214 0.92778 0.92972 0.91273 0.92402 0.90811 0.87924 0.79531 0.76331 0.87703 0.93360 0.93099 0.92940 0.92783 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.15 0.37 -1.09 16 2 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.04 -0.53 5.25 -27.88 -0.15 -0.68 16 4 C 0.14 1.88 6.52 -82.02 -0.53 1.35 16 5 N -0.30 -3.91 12.63 33.90 0.43 -3.48 16 6 N -0.46 -4.60 7.29 30.85 0.22 -4.38 16 7 H 0.44 2.74 8.96 -182.72 -1.64 1.11 16 8 C 0.11 1.15 11.52 -16.56 -0.19 0.96 16 9 C -0.28 -3.93 6.13 -105.06 -0.64 -4.57 16 10 C 0.59 9.53 7.81 -12.52 -0.10 9.43 16 11 O -0.55 -9.89 14.51 5.27 0.08 -9.81 16 12 N -0.69 -11.11 5.39 -54.55 -0.29 -11.40 16 13 C 0.10 1.78 4.61 -67.67 -0.31 1.47 16 14 C 0.11 2.08 8.44 -8.51 -0.07 2.01 16 15 N -0.63 -14.66 3.70 -184.60 -0.68 -15.35 16 16 C -0.31 -8.49 11.08 -15.06 -0.17 -8.66 16 17 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 18 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 19 N -0.93 -28.94 13.70 55.49 0.76 -28.18 16 20 Si 1.07 26.84 25.13 -169.99 -4.27 22.56 16 21 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 22 H -0.29 -7.07 6.65 56.52 0.38 -6.69 16 23 H -0.29 -6.77 6.13 56.52 0.35 -6.42 16 24 C 0.08 1.76 5.54 -8.36 -0.05 1.71 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.37 6.56 -51.93 -0.34 1.03 16 32 H 0.19 1.46 7.46 -52.49 -0.39 1.07 16 33 H 0.40 5.98 7.68 -40.82 -0.31 5.67 16 34 H 0.11 1.72 7.45 -51.93 -0.39 1.33 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 38 H 0.05 1.11 7.73 -51.93 -0.40 0.71 16 39 H 0.05 1.20 4.65 -51.93 -0.24 0.96 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -34.36 322.87 -7.74 -42.10 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.75 Total: 3.37 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.10 Total: -0.29 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.44 Total: -62.79 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.27 Total: 22.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.36 -7.74 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030589823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.952 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds