Wall clock time and date at job start Tue Mar 31 2020 00:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.30452 * 125.99019 * 270.14731 * 4 3 2 6 6 N 1.39937 * 108.89475 * 180.26008 * 5 4 3 7 7 H 0.96997 * 125.74934 * 179.73000 * 6 5 4 8 8 C 1.34254 * 108.49367 * 359.75076 * 6 5 4 9 9 C 1.38048 * 107.41763 * 0.02562 * 8 6 5 10 10 C 1.47432 * 126.41355 * 179.97438 * 9 8 6 11 11 O 1.21608 * 119.99684 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99874 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99438 * 180.02562 * 12 10 9 14 14 C 1.53498 * 114.20367 * 155.00573 * 13 12 10 15 15 N 1.47065 * 87.98675 * 87.51602 * 14 13 12 16 16 C 1.36935 * 136.05778 * 207.07950 * 15 14 13 17 17 H 1.07997 * 119.99961 * 6.77313 * 16 15 14 18 18 C 1.38812 * 119.99962 * 186.76980 * 16 15 14 19 19 N 1.31618 * 119.99992 * 172.26235 * 18 16 15 20 20 Si 1.86794 * 120.00220 * 352.26666 * 18 16 15 21 21 H 1.48493 * 109.47463 * 175.35996 * 20 18 16 22 22 H 1.48510 * 109.46810 * 295.35961 * 20 18 16 23 23 H 1.48498 * 109.47153 * 55.35226 * 20 18 16 24 24 C 1.47070 * 87.88470 * 27.34556 * 15 14 13 25 25 H 1.09001 * 109.47073 * 59.99718 * 1 2 3 26 26 H 1.09003 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47412 * 300.00022 * 1 2 3 28 28 H 1.08998 * 109.47412 * 239.99978 * 2 1 3 29 29 H 1.08997 * 109.47351 * 119.99870 * 2 1 3 30 30 H 1.09006 * 109.46829 * 60.00040 * 3 2 1 31 31 H 1.09001 * 109.47280 * 300.00155 * 3 2 1 32 32 H 1.07997 * 126.28992 * 179.97438 * 8 6 5 33 33 H 0.96999 * 120.00385 * 0.02562 * 12 10 9 34 34 H 1.09000 * 113.28874 * 21.93582 * 13 12 10 35 35 H 1.09003 * 113.46903 * 332.73508 * 14 13 12 36 36 H 1.09002 * 113.47097 * 202.29943 * 14 13 12 37 37 H 0.97005 * 119.99783 * 4.88000 * 19 18 16 38 38 H 1.08996 * 113.47141 * 87.43428 * 24 15 14 39 39 H 1.09002 * 113.46180 * 217.88172 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4400 1.0565 6 7 5.6508 1.4470 0.6457 7 1 6.4236 1.4506 1.2319 8 6 5.6842 1.4484 -0.6964 9 6 4.3777 1.4429 -1.1423 10 6 3.9326 1.4428 -2.5478 11 8 2.7450 1.4380 -2.8094 12 7 4.8418 1.4478 -3.5426 13 6 4.3994 1.4482 -4.9392 14 6 5.4167 2.0453 -5.9214 15 7 6.0192 0.7081 -6.0295 16 6 7.2606 0.2062 -6.3160 17 1 8.1015 0.8751 -6.4252 18 6 7.4383 -1.1623 -6.4662 19 7 8.5919 -1.6336 -6.8898 20 14 6.0402 -2.3350 -6.0671 21 1 6.4425 -3.7215 -6.4147 22 1 5.7289 -2.2588 -4.6170 23 1 4.8376 -1.9569 -6.8520 24 6 4.7001 0.1469 -5.7010 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.5703 1.4538 -1.3138 33 1 5.7891 1.4512 -3.3339 34 1 3.3825 1.8185 -5.0690 35 1 6.0774 2.7836 -5.4668 36 1 4.9684 2.3959 -6.8511 37 1 9.3398 -1.0319 -7.0294 38 1 4.0628 -0.0030 -6.5724 39 1 4.7502 -0.7322 -5.0585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030589823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:34 Heat of formation + Delta-G solvation = 61.935684 kcal Electronic energy + Delta-G solvation = -21680.910918 eV Core-core repulsion = 18432.845149 eV Total energy + Delta-G solvation = -3248.065769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.45881 -40.86484 -39.15164 -36.19649 -35.01790 -34.05383 -32.57000 -31.40292 -29.56547 -28.01823 -26.97428 -25.07771 -23.77229 -22.88274 -21.72735 -21.02514 -20.55654 -19.54352 -19.29748 -17.63459 -17.34548 -16.52977 -16.19897 -16.04028 -15.83572 -15.51317 -15.31932 -15.12529 -15.03814 -14.51904 -14.23035 -13.90719 -13.50699 -13.25678 -12.87994 -12.74596 -12.45061 -12.44534 -12.14479 -12.03152 -11.96391 -11.54510 -11.33247 -11.20934 -11.00081 -10.82488 -10.52676 -10.03981 -9.70919 -9.17711 -8.61107 -5.43240 0.51222 1.07803 1.40956 1.46329 1.65966 1.77241 2.27077 2.44232 2.52594 2.98027 3.27368 3.43732 3.67786 3.72687 4.11968 4.14476 4.23485 4.34367 4.37785 4.39902 4.44905 4.61260 4.69283 4.74055 4.82642 4.86588 4.90372 4.99841 5.05077 5.15367 5.21997 5.36545 5.44378 5.47826 5.67206 5.98397 6.23030 6.47891 6.70353 6.73895 7.33572 7.35688 8.30450 8.94782 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.004858 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.284978 B = 5762.285274 C = 6044.254421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.042 4.042 4 C 0.127 3.873 5 N -0.319 5.319 6 N -0.446 5.446 7 H 0.460 0.540 8 C 0.130 3.870 9 C -0.317 4.317 10 C 0.595 3.405 11 O -0.571 6.571 12 N -0.694 5.694 13 C 0.125 3.875 14 C 0.118 3.882 15 N -0.654 5.654 16 C -0.282 4.282 17 H 0.059 0.941 18 C -0.079 4.079 19 N -0.974 5.974 20 Si 1.105 2.895 21 H -0.310 1.310 22 H -0.281 1.281 23 H -0.266 1.266 24 C 0.073 3.927 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.219 0.781 33 H 0.407 0.593 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 8.487 16.145 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.041 4.041 5 N -0.141 5.141 6 N -0.152 5.152 7 H 0.309 0.691 8 C -0.025 4.025 9 C -0.332 4.332 10 C 0.384 3.616 11 O -0.451 6.451 12 N -0.344 5.344 13 C 0.018 3.982 14 C -0.008 4.008 15 N -0.384 5.384 16 C -0.410 4.410 17 H 0.077 0.923 18 C -0.271 4.271 19 N -0.620 5.620 20 Si 0.934 3.066 21 H -0.238 1.238 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.235 0.765 33 H 0.243 0.757 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.923 6.851 17.184 22.008 hybrid contribution 2.147 1.378 -1.026 2.750 sum -9.776 8.229 16.158 20.600 Atomic orbital electron populations 1.21707 0.93916 1.02236 1.02351 1.21313 0.97198 0.94990 1.01063 1.20201 0.85003 0.98839 1.04035 1.22655 0.97685 0.94918 0.88809 1.77088 0.87357 1.27141 1.22561 1.46129 1.07637 1.55761 1.05676 0.69121 1.23657 0.99214 0.93652 0.85953 1.20296 0.93561 1.25599 0.93699 1.17464 0.85246 0.74793 0.84093 1.90693 1.17229 1.52511 1.84707 1.45311 1.10024 1.74447 1.04609 1.22177 0.99139 0.96050 0.80834 1.22903 0.92676 0.88568 0.96662 1.46171 1.03716 1.04460 1.84011 1.19995 0.84384 0.92513 1.44089 0.92344 1.26722 1.04085 0.97231 0.99111 1.71019 1.03537 1.37926 1.49541 0.83239 0.73118 0.73538 0.76699 1.23823 1.20793 1.19108 1.23506 0.86944 0.97610 0.97204 0.92765 0.92112 0.91376 0.93773 0.92204 0.89344 0.89287 0.76500 0.75696 0.86034 0.91991 0.91120 0.94239 0.91863 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 3 C -0.04 -0.98 5.25 29.85 0.16 -0.82 16 4 C 0.13 3.29 6.52 43.51 0.28 3.57 16 5 N -0.32 -7.61 12.63 -46.68 -0.59 -8.20 16 6 N -0.45 -7.63 7.29 -56.32 -0.41 -8.05 16 7 H 0.46 4.27 8.96 -213.43 -1.91 2.36 16 8 C 0.13 2.42 11.52 84.28 0.97 3.39 16 9 C -0.32 -8.22 6.13 -20.15 -0.12 -8.34 16 10 C 0.59 18.09 7.81 86.67 0.68 18.77 16 11 O -0.57 -20.01 14.51 -4.06 -0.06 -20.07 16 12 N -0.69 -20.52 5.39 -444.76 -2.40 -22.92 16 13 C 0.13 3.99 4.61 45.55 0.21 4.20 16 14 C 0.12 3.97 8.44 83.18 0.70 4.67 16 15 N -0.65 -29.28 3.70 -737.96 -2.73 -32.01 16 16 C -0.28 -15.50 11.08 84.03 0.93 -14.57 16 17 H 0.06 3.42 8.05 -2.91 -0.02 3.40 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 19 N -0.97 -61.67 13.70 21.65 0.30 -61.37 16 20 Si 1.11 53.97 25.13 68.60 1.72 55.70 16 21 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 22 H -0.28 -12.88 6.65 99.48 0.66 -12.22 16 23 H -0.27 -11.89 6.13 99.48 0.61 -11.28 16 24 C 0.07 2.90 5.54 83.27 0.46 3.36 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.09 2.34 6.56 -2.39 -0.02 2.32 16 32 H 0.22 2.58 7.46 -2.91 -0.02 2.56 16 33 H 0.41 11.04 7.68 -92.71 -0.71 10.33 16 34 H 0.12 3.59 7.45 -2.39 -0.02 3.57 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.25 15.65 8.73 -92.70 -0.81 14.84 16 38 H 0.06 2.41 7.73 -2.39 -0.02 2.39 16 39 H 0.04 1.73 4.65 -2.39 -0.01 1.72 16 Total: -1.00 -74.39 322.87 -0.25 -74.64 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -1.72 Total: 16.38 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.63 Total: 5.89 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -5.83 Total: -132.54 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 1.72 Total: 55.70 kcal Total: -74.39 -0.25 -74.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030589823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.575 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds