Wall clock time and date at job start Tue Mar 31 2020 00:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46951 * 2 1 4 4 C 1.38045 * 126.28886 * 270.00057 * 3 2 1 5 5 C 1.47425 * 126.41650 * 359.97438 * 4 3 2 6 6 O 1.21604 * 120.00091 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00166 * 179.97438 * 7 5 4 9 9 C 1.53496 * 114.20781 * 154.99901 * 8 7 5 10 10 N 1.47062 * 87.98485 * 87.52018 * 9 8 7 11 11 C 1.36939 * 136.05593 * 207.08750 * 10 9 8 12 12 H 1.08008 * 119.99868 * 7.82597 * 11 10 9 13 13 C 1.38808 * 120.00203 * 187.82575 * 11 10 9 14 14 N 1.31618 * 119.99998 * 195.17052 * 13 11 10 15 15 Si 1.86797 * 119.99840 * 15.16580 * 13 11 10 16 16 H 1.48503 * 109.47450 * 270.00422 * 15 13 11 17 17 H 1.48503 * 109.47360 * 30.00092 * 15 13 11 18 18 H 1.48498 * 109.47360 * 150.00270 * 15 13 11 19 19 C 1.47059 * 87.88616 * 27.34176 * 10 9 8 20 20 C 1.41288 * 107.16702 * 180.24961 * 4 3 2 21 21 N 1.30447 * 108.02335 * 359.61553 * 20 4 3 22 22 N 1.34250 * 126.29066 * 90.02511 * 3 2 1 23 23 C 1.46503 * 125.75600 * 359.96178 * 22 3 2 24 24 H 1.09005 * 109.47065 * 299.99758 * 1 2 3 25 25 H 1.08995 * 109.47320 * 59.99747 * 1 2 3 26 26 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46385 * 240.00162 * 2 1 3 28 28 H 1.08995 * 109.47320 * 120.00253 * 2 1 3 29 29 H 0.96996 * 119.99820 * 359.97438 * 7 5 4 30 30 H 1.09006 * 113.27838 * 21.93040 * 8 7 5 31 31 H 1.09008 * 113.46447 * 332.73453 * 9 8 7 32 32 H 1.09003 * 113.46673 * 202.30352 * 9 8 7 33 33 H 0.96995 * 120.00365 * 354.90363 * 14 13 11 34 34 H 1.08997 * 113.47135 * 87.43718 * 19 10 9 35 35 H 1.09007 * 113.47198 * 217.88025 * 19 10 9 36 36 H 1.08003 * 125.98805 * 179.74337 * 20 4 3 37 37 H 1.09004 * 109.46978 * 89.99358 * 23 22 3 38 38 H 1.09000 * 109.47444 * 209.99707 * 23 22 3 39 39 H 1.09000 * 109.47135 * 329.99794 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1912 -1.1127 5 6 2.1591 1.7778 -2.5203 6 8 1.7646 0.6590 -2.7878 7 7 2.4642 2.6395 -3.5107 8 6 2.3200 2.2285 -4.9095 9 6 2.1039 3.3912 -5.8880 10 7 3.5663 3.5087 -5.9903 11 6 4.4579 4.5098 -6.2696 12 1 4.1140 5.5298 -6.3591 13 6 5.8036 4.2138 -6.4376 14 7 6.6984 5.1786 -6.4076 15 14 6.3446 2.4462 -6.7063 16 1 6.6235 1.8090 -5.3943 17 1 5.2656 1.6983 -7.4004 18 1 7.5748 2.4260 -7.5379 19 6 3.6494 2.0765 -5.6669 20 6 2.7551 3.4478 -0.6499 21 7 2.7421 3.4259 0.6543 22 7 2.2976 2.1699 1.0821 23 6 2.1469 1.7442 2.4758 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.7792 3.5317 -3.2974 30 1 1.6295 1.3961 -5.0450 31 1 1.6294 4.2601 -5.4318 32 1 1.6263 3.0907 -6.8206 33 1 6.4127 6.1032 -6.3422 34 1 3.5792 1.4293 -6.5411 35 1 4.4917 1.8251 -5.0222 36 1 3.0555 4.2812 -1.2677 37 1 3.0783 1.2954 2.8213 38 1 1.9079 2.6082 3.0958 39 1 1.3426 1.0120 2.5471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030604106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:55 Heat of formation + Delta-G solvation = 98.391042 kcal Electronic energy + Delta-G solvation = -21738.345986 eV Core-core repulsion = 18491.861040 eV Total energy + Delta-G solvation = -3246.484946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54024 -39.39715 -37.67755 -34.58404 -33.25190 -33.04056 -32.02760 -29.41939 -28.00230 -26.99098 -25.24805 -24.15225 -22.96340 -22.01639 -20.60243 -19.59643 -19.24325 -17.55111 -17.40574 -16.02930 -15.80373 -15.65358 -14.94331 -14.59393 -14.51306 -14.23651 -13.90284 -13.66848 -13.40168 -13.21407 -13.08281 -12.92831 -12.77710 -12.40100 -11.95082 -11.80568 -11.38099 -11.32869 -10.89010 -10.76242 -10.48061 -10.11760 -9.72493 -9.57404 -9.49745 -9.21227 -8.74810 -8.69579 -8.32972 -7.17918 -6.29012 -3.21842 1.48661 2.20033 2.22766 3.46752 3.49795 3.59768 3.65306 3.68832 4.30507 4.35218 4.61738 4.73051 4.80293 4.82056 4.93334 5.07968 5.10352 5.19499 5.24216 5.28673 5.41398 5.48009 5.56708 5.74416 5.94230 5.98015 6.04169 6.07129 6.25470 6.32387 6.39125 6.44245 6.53244 6.73296 7.09582 7.14709 7.48598 8.00235 8.24831 8.62989 8.98339 9.52009 10.38659 11.20728 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.004626 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.604114 B = 6050.954536 C = 6502.312041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C 0.157 3.843 4 C -0.290 4.290 5 C 0.596 3.404 6 O -0.557 6.557 7 N -0.691 5.691 8 C 0.104 3.896 9 C 0.108 3.892 10 N -0.624 5.624 11 C -0.306 4.306 12 H 0.082 0.918 13 C -0.021 4.021 14 N -0.932 5.932 15 Si 1.061 2.939 16 H -0.294 1.294 17 H -0.281 1.281 18 H -0.296 1.296 19 C 0.086 3.914 20 C 0.087 3.913 21 N -0.301 5.301 22 N -0.366 5.366 23 C 0.097 3.903 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.405 0.595 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.192 0.808 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -9.539 16.256 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C 0.024 3.976 4 C -0.305 4.305 5 C 0.384 3.616 6 O -0.437 6.437 7 N -0.340 5.340 8 C -0.003 4.003 9 C -0.019 4.019 10 N -0.353 5.353 11 C -0.433 4.433 12 H 0.099 0.901 13 C -0.220 4.220 14 N -0.574 5.574 15 Si 0.893 3.107 16 H -0.222 1.222 17 H -0.208 1.208 18 H -0.224 1.224 19 C -0.040 4.040 20 C -0.100 4.100 21 N -0.120 5.120 22 N -0.145 5.145 23 C -0.044 4.044 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.240 0.760 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.209 0.791 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.438 -10.425 17.048 23.025 hybrid contribution -1.118 1.198 -0.600 1.745 sum -12.557 -9.227 16.448 22.657 Atomic orbital electron populations 1.21636 0.93530 1.02366 1.02184 1.20442 0.96982 0.88462 1.04835 1.21497 0.95084 0.94727 0.86255 1.20042 1.20370 0.96391 0.93697 1.17142 0.76587 0.84352 0.83531 1.90683 1.48462 1.20243 1.84299 1.45252 1.66723 1.17043 1.04956 1.22392 0.98742 0.98558 0.80572 1.22760 0.88273 0.95337 0.95534 1.46367 1.00989 1.04733 1.83162 1.20129 0.88558 0.86815 1.47751 0.90068 1.25732 0.91115 1.06354 0.98848 1.70908 1.34013 1.00389 1.52077 0.83787 0.75265 0.75010 0.76661 1.22185 1.20778 1.22383 1.23204 0.96369 0.88037 0.96434 1.24131 0.96490 0.97504 0.91904 1.77196 1.22233 0.99143 1.13381 1.48330 1.50109 1.09891 1.06215 1.21928 1.03147 1.01756 0.77593 0.93414 0.91497 0.91559 0.86848 0.90968 0.75981 0.87871 0.93280 0.93394 0.92882 0.92849 0.92728 0.79124 0.90381 0.88914 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.07 -0.70 5.39 -27.88 -0.15 -0.85 16 3 C 0.16 2.00 6.26 -81.60 -0.51 1.49 16 4 C -0.29 -4.31 6.13 -105.07 -0.64 -4.96 16 5 C 0.60 9.96 7.81 -12.52 -0.10 9.86 16 6 O -0.56 -10.16 14.43 5.27 0.08 -10.08 16 7 N -0.69 -11.73 5.39 -54.56 -0.29 -12.02 16 8 C 0.10 1.87 4.61 -67.68 -0.31 1.56 16 9 C 0.11 2.05 8.44 -8.52 -0.07 1.98 16 10 N -0.62 -14.92 3.62 -184.65 -0.67 -15.59 16 11 C -0.31 -8.64 11.03 -15.06 -0.17 -8.80 16 12 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 13 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 14 N -0.93 -29.29 13.70 55.49 0.76 -28.53 16 15 Si 1.06 27.02 25.50 -169.99 -4.34 22.69 16 16 H -0.29 -7.33 6.97 56.52 0.39 -6.94 16 17 H -0.28 -6.66 5.66 56.52 0.32 -6.34 16 18 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 19 C 0.09 1.85 5.43 -8.39 -0.05 1.80 16 20 C 0.09 1.23 11.50 -16.98 -0.20 1.04 16 21 N -0.30 -4.25 12.50 30.86 0.39 -3.87 16 22 N -0.37 -4.32 3.98 -63.34 -0.25 -4.57 16 23 C 0.10 0.66 11.06 59.85 0.66 1.32 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.11 1.40 6.50 -51.93 -0.34 1.06 16 28 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 29 H 0.41 6.67 7.72 -40.82 -0.31 6.35 16 30 H 0.10 1.74 7.45 -51.93 -0.39 1.35 16 31 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 34 H 0.05 1.12 7.02 -51.93 -0.36 0.75 16 35 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 36 H 0.19 2.33 7.50 -52.48 -0.39 1.93 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.40 7.62 -51.93 -0.40 0.00 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -34.94 323.45 -6.25 -41.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.54 Total: 3.08 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.26 Total: 2.83 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.07 Total: -64.58 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 27.02 SS G_CDS: -4.34 Total: 22.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.94 -6.25 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030604106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.581 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds