Wall clock time and date at job start Tue Mar 31 2020 00:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46951 * 2 1 4 4 C 1.38045 * 126.28886 * 270.00057 * 3 2 1 5 5 C 1.47425 * 126.41650 * 359.97438 * 4 3 2 6 6 O 1.21604 * 120.00091 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00166 * 179.97438 * 7 5 4 9 9 C 1.53496 * 114.20781 * 154.99901 * 8 7 5 10 10 N 1.47062 * 87.98485 * 87.52018 * 9 8 7 11 11 C 1.36939 * 136.05593 * 207.08750 * 10 9 8 12 12 H 1.08008 * 119.99868 * 7.82597 * 11 10 9 13 13 C 1.38808 * 120.00203 * 187.82575 * 11 10 9 14 14 N 1.31618 * 119.99998 * 195.17052 * 13 11 10 15 15 Si 1.86797 * 119.99840 * 15.16580 * 13 11 10 16 16 H 1.48503 * 109.47450 * 270.00422 * 15 13 11 17 17 H 1.48503 * 109.47360 * 30.00092 * 15 13 11 18 18 H 1.48498 * 109.47360 * 150.00270 * 15 13 11 19 19 C 1.47059 * 87.88616 * 27.34176 * 10 9 8 20 20 C 1.41288 * 107.16702 * 180.24961 * 4 3 2 21 21 N 1.30447 * 108.02335 * 359.61553 * 20 4 3 22 22 N 1.34250 * 126.29066 * 90.02511 * 3 2 1 23 23 C 1.46503 * 125.75600 * 359.96178 * 22 3 2 24 24 H 1.09005 * 109.47065 * 299.99758 * 1 2 3 25 25 H 1.08995 * 109.47320 * 59.99747 * 1 2 3 26 26 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46385 * 240.00162 * 2 1 3 28 28 H 1.08995 * 109.47320 * 120.00253 * 2 1 3 29 29 H 0.96996 * 119.99820 * 359.97438 * 7 5 4 30 30 H 1.09006 * 113.27838 * 21.93040 * 8 7 5 31 31 H 1.09008 * 113.46447 * 332.73453 * 9 8 7 32 32 H 1.09003 * 113.46673 * 202.30352 * 9 8 7 33 33 H 0.96995 * 120.00365 * 354.90363 * 14 13 11 34 34 H 1.08997 * 113.47135 * 87.43718 * 19 10 9 35 35 H 1.09007 * 113.47198 * 217.88025 * 19 10 9 36 36 H 1.08003 * 125.98805 * 179.74337 * 20 4 3 37 37 H 1.09004 * 109.46978 * 89.99358 * 23 22 3 38 38 H 1.09000 * 109.47444 * 209.99707 * 23 22 3 39 39 H 1.09000 * 109.47135 * 329.99794 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3047 2.1912 -1.1127 5 6 2.1591 1.7778 -2.5203 6 8 1.7646 0.6590 -2.7878 7 7 2.4642 2.6395 -3.5107 8 6 2.3200 2.2285 -4.9095 9 6 2.1039 3.3912 -5.8880 10 7 3.5663 3.5087 -5.9903 11 6 4.4579 4.5098 -6.2696 12 1 4.1140 5.5298 -6.3591 13 6 5.8036 4.2138 -6.4376 14 7 6.6984 5.1786 -6.4076 15 14 6.3446 2.4462 -6.7063 16 1 6.6235 1.8090 -5.3943 17 1 5.2656 1.6983 -7.4004 18 1 7.5748 2.4260 -7.5379 19 6 3.6494 2.0765 -5.6669 20 6 2.7551 3.4478 -0.6499 21 7 2.7421 3.4259 0.6543 22 7 2.2976 2.1699 1.0821 23 6 2.1469 1.7442 2.4758 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.7792 3.5317 -3.2974 30 1 1.6295 1.3961 -5.0450 31 1 1.6294 4.2601 -5.4318 32 1 1.6263 3.0907 -6.8206 33 1 6.4127 6.1032 -6.3422 34 1 3.5792 1.4293 -6.5411 35 1 4.4917 1.8251 -5.0222 36 1 3.0555 4.2812 -1.2677 37 1 3.0783 1.2954 2.8213 38 1 1.9079 2.6082 3.0958 39 1 1.3426 1.0120 2.5471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030604106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:53 Heat of formation + Delta-G solvation = 72.284353 kcal Electronic energy + Delta-G solvation = -21739.478057 eV Core-core repulsion = 18491.861040 eV Total energy + Delta-G solvation = -3247.617017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.54133 -40.86629 -39.16140 -35.53112 -34.88034 -34.07574 -33.70637 -30.50000 -29.64817 -27.95407 -26.89930 -25.16947 -24.36562 -23.37233 -21.81419 -21.00711 -20.49794 -19.44395 -18.65628 -17.25890 -17.07656 -16.68116 -16.47667 -15.94935 -15.58458 -15.47679 -15.35046 -15.22580 -15.03373 -14.41128 -14.22538 -13.72398 -13.49075 -13.45308 -13.28597 -13.19783 -12.73945 -12.60940 -12.27288 -12.15639 -11.92695 -11.67933 -11.58327 -11.25174 -10.89333 -10.80391 -10.42638 -9.98744 -9.58177 -9.22263 -8.57598 -5.42417 0.48420 1.09254 1.39787 1.41562 1.50055 1.65230 2.29998 2.44447 2.54440 3.05402 3.19988 3.47179 3.50004 3.69065 3.91843 4.03333 4.27412 4.32949 4.36323 4.39994 4.42304 4.48173 4.63626 4.66689 4.68929 4.71139 4.76608 4.82828 5.00435 5.01861 5.23469 5.24668 5.32402 5.36271 5.68386 5.89389 5.99297 6.46597 6.68098 6.73918 7.31968 7.36966 8.31473 8.94103 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.004626 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.604114 B = 6050.954536 C = 6502.312041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C 0.164 3.836 4 C -0.322 4.322 5 C 0.598 3.402 6 O -0.574 6.574 7 N -0.695 5.695 8 C 0.126 3.874 9 C 0.113 3.887 10 N -0.651 5.651 11 C -0.284 4.284 12 H 0.055 0.945 13 C -0.080 4.080 14 N -0.971 5.971 15 Si 1.097 2.903 16 H -0.289 1.289 17 H -0.252 1.252 18 H -0.305 1.305 19 C 0.078 3.922 20 C 0.080 3.920 21 N -0.323 5.323 22 N -0.359 5.359 23 C 0.083 3.917 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.405 0.595 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.198 0.802 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 -11.869 17.901 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C 0.030 3.970 4 C -0.337 4.337 5 C 0.387 3.613 6 O -0.455 6.455 7 N -0.344 5.344 8 C 0.019 3.981 9 C -0.013 4.013 10 N -0.380 5.380 11 C -0.412 4.412 12 H 0.073 0.927 13 C -0.273 4.273 14 N -0.617 5.617 15 Si 0.924 3.076 16 H -0.217 1.217 17 H -0.177 1.177 18 H -0.233 1.233 19 C -0.048 4.048 20 C -0.107 4.107 21 N -0.142 5.142 22 N -0.138 5.138 23 C -0.056 4.056 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.241 0.759 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.215 0.785 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.346 -12.764 18.730 26.303 hybrid contribution -0.678 1.926 -0.978 2.264 sum -14.024 -10.838 17.752 25.085 Atomic orbital electron populations 1.21603 0.92444 1.03453 1.01678 1.20524 0.97753 0.86787 1.05435 1.21884 0.93648 0.95540 0.85957 1.20045 1.22866 0.97433 0.93352 1.17370 0.75833 0.83915 0.84143 1.90665 1.49318 1.20841 1.84701 1.45295 1.67029 1.17245 1.04787 1.22183 0.96808 0.98522 0.80608 1.22947 0.85341 0.96194 0.96820 1.46361 1.03040 1.05316 1.83251 1.19987 0.89393 0.87077 1.44738 0.92696 1.26825 0.91844 1.08864 0.99719 1.71003 1.34885 1.00115 1.55697 0.83341 0.75448 0.71875 0.76888 1.21678 1.17659 1.23272 1.23434 0.97647 0.86493 0.97216 1.24274 0.96513 0.97697 0.92181 1.77135 1.22999 1.00804 1.13304 1.48715 1.48482 1.08856 1.07732 1.22414 1.05183 1.03018 0.75015 0.91708 0.94177 0.89691 0.89025 0.87541 0.75933 0.85801 0.92456 0.90910 0.94289 0.91347 0.94357 0.78544 0.88802 0.88044 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.89 71.98 0.71 -1.32 16 2 C -0.07 -1.17 5.39 29.85 0.16 -1.01 16 3 C 0.16 3.87 6.26 42.14 0.26 4.14 16 4 C -0.32 -9.33 6.13 -20.15 -0.12 -9.45 16 5 C 0.60 19.44 7.81 86.66 0.68 20.12 16 6 O -0.57 -20.23 14.43 -4.04 -0.06 -20.29 16 7 N -0.70 -22.87 5.39 -444.79 -2.40 -25.27 16 8 C 0.13 4.24 4.61 45.55 0.21 4.45 16 9 C 0.11 4.02 8.44 83.17 0.70 4.72 16 10 N -0.65 -30.38 3.62 -738.11 -2.67 -33.06 16 11 C -0.28 -16.19 11.03 84.03 0.93 -15.27 16 12 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 13 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 14 N -0.97 -62.96 13.70 21.65 0.30 -62.67 16 15 Si 1.10 54.66 25.50 68.60 1.75 56.41 16 16 H -0.29 -14.04 6.97 99.48 0.69 -13.34 16 17 H -0.25 -11.17 5.66 99.48 0.56 -10.61 16 18 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 19 C 0.08 3.19 5.43 83.26 0.45 3.64 16 20 C 0.08 2.24 11.50 85.65 0.99 3.23 16 21 N -0.32 -8.81 12.50 -56.27 -0.70 -9.51 16 22 N -0.36 -7.67 3.98 -354.30 -1.41 -9.08 16 23 C 0.08 0.84 11.06 127.77 1.41 2.25 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 2.11 6.50 -2.39 -0.02 2.09 16 28 H 0.11 1.15 7.70 -2.39 -0.02 1.13 16 29 H 0.41 13.22 7.72 -92.71 -0.72 12.51 16 30 H 0.12 3.77 7.45 -2.38 -0.02 3.76 16 31 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 34 H 0.07 2.62 7.02 -2.39 -0.02 2.61 16 35 H 0.04 1.70 6.22 -2.38 -0.01 1.68 16 36 H 0.20 4.89 7.50 -2.91 -0.02 4.87 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 0.52 7.62 -2.39 -0.02 0.50 16 Total: -1.00 -76.74 323.45 1.81 -74.93 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.15 Total: 17.36 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.85 Total: 11.19 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -6.89 Total: -139.59 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.06 Total: -20.29 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 1.75 Total: 56.41 kcal Total: -76.74 1.81 -74.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030604106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.214 kcal (2) G-P(sol) polarization free energy of solvation -76.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds