Wall clock time and date at job start Tue Mar 31 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 N 1.46501 * 109.47102 * 119.99732 * 2 1 3 5 5 C 1.35852 * 126.13766 * 300.00544 * 4 2 1 6 6 N 1.30168 * 109.00314 * 179.97438 * 5 4 2 7 7 C 1.35761 * 108.86872 * 0.02562 * 6 5 4 8 8 C 1.47326 * 126.23472 * 180.02562 * 7 6 5 9 9 O 1.21625 * 119.99965 * 179.97438 * 8 7 6 10 10 N 1.34768 * 119.99960 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00158 * 179.97438 * 10 8 7 12 12 C 1.53947 * 113.74426 * 253.74178 * 11 10 8 13 13 N 1.47805 * 86.03601 * 222.08140 * 12 11 10 14 14 C 1.36938 * 134.45565 * 204.64234 * 13 12 11 15 15 H 1.08001 * 119.99808 * 173.34487 * 14 13 12 16 16 C 1.38812 * 120.00087 * 353.34682 * 14 13 12 17 17 N 1.31622 * 119.99982 * 5.06577 * 16 14 13 18 18 Si 1.86798 * 120.00216 * 185.05951 * 16 14 13 19 19 H 1.48507 * 109.46885 * 94.98856 * 18 16 14 20 20 H 1.48490 * 109.47560 * 214.98831 * 18 16 14 21 21 H 1.48507 * 109.47224 * 334.99411 * 18 16 14 22 22 C 1.47582 * 91.05326 * 24.54514 * 13 12 11 23 23 C 1.35380 * 126.13444 * 119.99883 * 4 2 1 24 24 H 1.08998 * 109.47392 * 300.00280 * 1 2 3 25 25 H 1.09007 * 109.47165 * 59.99927 * 1 2 3 26 26 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47392 * 239.99720 * 2 1 3 28 28 H 1.09000 * 109.46866 * 60.00291 * 3 2 1 29 29 H 1.09005 * 109.46989 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47121 * 299.99968 * 3 2 1 31 31 H 1.08001 * 125.49645 * 359.95946 * 5 4 2 32 32 H 0.96997 * 120.00655 * 0.02562 * 10 8 7 33 33 H 1.09004 * 112.94083 * 25.33283 * 11 10 8 34 34 H 1.09003 * 113.76315 * 336.34682 * 12 11 10 35 35 H 1.09000 * 113.77177 * 107.74132 * 12 11 10 36 36 H 0.96992 * 120.00223 * 179.97438 * 17 16 14 37 37 H 1.08994 * 113.76981 * 221.14768 * 22 13 12 38 38 H 1.09002 * 113.76778 * 89.75663 * 22 13 12 39 39 H 1.08007 * 126.56393 * 359.74156 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7681 -0.3368 2.4838 6 7 2.3631 -1.1791 3.2780 7 6 3.0167 -2.1030 2.5282 8 6 3.8141 -3.2321 3.0378 9 8 4.3538 -3.9956 2.2599 10 7 3.9454 -3.4192 4.3660 11 6 4.7378 -4.5423 4.8728 12 6 3.8890 -5.6862 5.4568 13 7 4.8939 -5.7417 6.5392 14 6 5.3133 -6.7121 7.4097 15 1 6.1596 -6.5293 8.0552 16 6 4.6507 -7.9307 7.4623 17 7 3.6838 -8.1915 6.6082 18 14 5.1313 -9.2006 8.7452 19 1 4.2438 -9.0690 9.9286 20 1 4.9911 -10.5626 8.1705 21 1 6.5410 -8.9796 9.1567 22 6 5.2654 -4.3330 6.3037 23 6 2.7998 -1.7958 1.2168 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.1719 0.5073 2.7977 32 1 3.5147 -2.8106 4.9864 33 1 5.4998 -4.8767 4.1687 34 1 2.9000 -5.3727 5.7912 35 1 3.8650 -6.5789 4.8318 36 1 3.2211 -9.0432 6.6447 37 1 6.3383 -4.1473 6.3537 38 1 4.6817 -3.6212 6.8874 39 1 3.1756 -2.3342 0.3592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030741137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:42 Heat of formation + Delta-G solvation = 78.336254 kcal Electronic energy + Delta-G solvation = -20912.590141 eV Core-core repulsion = 17665.235555 eV Total energy + Delta-G solvation = -3247.354587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.32399 -39.11467 -37.31885 -36.28421 -33.32529 -31.79677 -31.21209 -29.63243 -27.90144 -27.33339 -24.70872 -24.08656 -23.34872 -22.15226 -20.65656 -19.64532 -19.34906 -17.63802 -16.66800 -16.26239 -15.76417 -15.71117 -14.93483 -14.83081 -14.37908 -14.18051 -14.01655 -13.73710 -13.48427 -13.34963 -12.85032 -12.76681 -12.54359 -11.97513 -11.79260 -11.75716 -11.36216 -11.31642 -10.81861 -10.70913 -10.34919 -10.28869 -9.98395 -9.90654 -9.56531 -9.42776 -8.72661 -8.69680 -8.20770 -6.81973 -5.71199 -3.03838 1.64386 2.38772 2.45485 3.44418 3.48507 3.51677 3.74115 3.86276 4.00692 4.31135 4.39104 4.43143 4.54861 4.56486 4.91663 5.03564 5.10600 5.16805 5.19464 5.27768 5.42299 5.50924 5.54672 5.57560 5.72280 5.96226 6.12563 6.34197 6.41357 6.56191 6.68966 6.90189 6.94477 7.33628 7.48171 7.63827 7.73343 8.03348 8.16736 8.75136 9.09984 9.76153 10.65273 11.46213 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.049124 B = 0.002933 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.854517 B = 9543.246079 C = 9637.248742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.454 5.454 5 C 0.183 3.817 6 N -0.461 5.461 7 C -0.054 4.054 8 C 0.598 3.402 9 O -0.551 6.551 10 N -0.699 5.699 11 C 0.091 3.909 12 C 0.158 3.842 13 N -0.608 5.608 14 C -0.224 4.224 15 H 0.082 0.918 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.113 3.887 23 C 0.029 3.971 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.205 0.795 32 H 0.404 0.596 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 21.522 -15.113 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.137 5.137 5 C -0.101 4.101 6 N -0.180 5.180 7 C -0.184 4.184 8 C 0.384 3.616 9 O -0.429 6.429 10 N -0.349 5.349 11 C -0.014 4.014 12 C 0.031 3.969 13 N -0.335 5.335 14 C -0.351 4.351 15 H 0.100 0.900 16 C -0.204 4.204 17 N -0.563 5.563 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.014 4.014 23 C -0.110 4.110 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.222 0.778 32 H 0.239 0.761 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.518 20.702 -14.727 26.228 hybrid contribution -0.240 -0.332 0.216 0.463 sum -6.758 20.369 -14.511 25.906 Atomic orbital electron populations 1.22191 0.92890 1.03588 1.03535 1.21549 0.95727 0.94143 0.86320 1.22188 1.02388 0.94025 1.03541 1.45622 1.37913 1.22077 1.08133 1.24972 1.04213 1.02135 0.78757 1.70637 1.10736 1.03996 1.32646 1.20764 1.07013 1.00150 0.90442 1.16929 0.79428 0.82434 0.82856 1.90782 1.49066 1.46313 1.56754 1.45924 1.51879 1.30813 1.06249 1.23909 0.95621 0.86988 0.94889 1.22651 0.91470 0.94675 0.88072 1.45722 1.42574 1.05410 1.39775 1.18993 1.10498 0.92076 1.13575 0.90041 1.24856 0.98074 0.98109 0.99359 1.69857 1.25812 1.23623 1.37013 0.86099 0.77800 0.80855 0.81018 1.21640 1.21700 1.20510 1.22870 0.98159 0.88692 0.91701 1.22601 0.97865 0.90673 0.99834 0.91421 0.90298 0.91447 0.87892 0.91436 0.91525 0.90295 0.77800 0.76090 0.87193 0.95120 0.90953 0.93592 0.93289 0.94574 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.24 37.16 0.34 -0.30 16 2 C 0.13 0.61 3.57 -67.93 -0.24 0.37 16 3 C -0.16 -0.59 9.24 37.16 0.34 -0.25 16 4 N -0.45 -3.99 2.59 -111.24 -0.29 -4.28 16 5 C 0.18 1.80 11.53 -89.91 -1.04 0.77 16 6 N -0.46 -6.43 11.01 -11.03 -0.12 -6.55 16 7 C -0.05 -0.83 6.98 -83.09 -0.58 -1.41 16 8 C 0.60 11.16 7.81 -12.57 -0.10 11.06 16 9 O -0.55 -11.83 16.50 5.26 0.09 -11.74 16 10 N -0.70 -12.94 5.37 -56.46 -0.30 -13.24 16 11 C 0.09 1.94 4.40 -70.15 -0.31 1.63 16 12 C 0.16 4.03 7.24 -2.84 -0.02 4.01 16 13 N -0.61 -16.44 3.70 -177.91 -0.66 -17.10 16 14 C -0.22 -6.52 10.70 -15.06 -0.16 -6.68 16 15 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -28.34 11.51 55.49 0.64 -27.70 16 18 Si 0.91 22.77 29.56 -169.99 -5.02 17.75 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.11 2.43 8.69 -2.97 -0.03 2.41 16 23 C 0.03 0.34 11.22 -16.64 -0.19 0.15 16 24 H 0.07 0.25 7.94 -51.93 -0.41 -0.16 16 25 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.07 0.23 7.94 -51.93 -0.41 -0.18 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.40 6.85 8.43 -40.82 -0.34 6.50 16 33 H 0.11 2.48 7.51 -51.93 -0.39 2.09 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 2.06 7.37 -51.93 -0.38 1.68 16 36 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 39 H 0.19 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -36.09 334.12 -8.41 -44.51 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.71 Total: 1.87 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.07 Total: 11.46 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -0.73 Total: -68.88 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.09 -8.41 -44.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030741137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.843 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds