Wall clock time and date at job start Tue Mar 31 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 N 1.46501 * 109.47102 * 119.99732 * 2 1 3 5 5 C 1.35852 * 126.13766 * 300.00544 * 4 2 1 6 6 N 1.30168 * 109.00314 * 179.97438 * 5 4 2 7 7 C 1.35761 * 108.86872 * 0.02562 * 6 5 4 8 8 C 1.47326 * 126.23472 * 180.02562 * 7 6 5 9 9 O 1.21625 * 119.99965 * 179.97438 * 8 7 6 10 10 N 1.34768 * 119.99960 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00158 * 179.97438 * 10 8 7 12 12 C 1.53947 * 113.74426 * 253.74178 * 11 10 8 13 13 N 1.47805 * 86.03601 * 222.08140 * 12 11 10 14 14 C 1.36938 * 134.45565 * 204.64234 * 13 12 11 15 15 H 1.08001 * 119.99808 * 173.34487 * 14 13 12 16 16 C 1.38812 * 120.00087 * 353.34682 * 14 13 12 17 17 N 1.31622 * 119.99982 * 5.06577 * 16 14 13 18 18 Si 1.86798 * 120.00216 * 185.05951 * 16 14 13 19 19 H 1.48507 * 109.46885 * 94.98856 * 18 16 14 20 20 H 1.48490 * 109.47560 * 214.98831 * 18 16 14 21 21 H 1.48507 * 109.47224 * 334.99411 * 18 16 14 22 22 C 1.47582 * 91.05326 * 24.54514 * 13 12 11 23 23 C 1.35380 * 126.13444 * 119.99883 * 4 2 1 24 24 H 1.08998 * 109.47392 * 300.00280 * 1 2 3 25 25 H 1.09007 * 109.47165 * 59.99927 * 1 2 3 26 26 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47392 * 239.99720 * 2 1 3 28 28 H 1.09000 * 109.46866 * 60.00291 * 3 2 1 29 29 H 1.09005 * 109.46989 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47121 * 299.99968 * 3 2 1 31 31 H 1.08001 * 125.49645 * 359.95946 * 5 4 2 32 32 H 0.96997 * 120.00655 * 0.02562 * 10 8 7 33 33 H 1.09004 * 112.94083 * 25.33283 * 11 10 8 34 34 H 1.09003 * 113.76315 * 336.34682 * 12 11 10 35 35 H 1.09000 * 113.77177 * 107.74132 * 12 11 10 36 36 H 0.96992 * 120.00223 * 179.97438 * 17 16 14 37 37 H 1.08994 * 113.76981 * 221.14768 * 22 13 12 38 38 H 1.09002 * 113.76778 * 89.75663 * 22 13 12 39 39 H 1.08007 * 126.56393 * 359.74156 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7681 -0.3368 2.4838 6 7 2.3631 -1.1791 3.2780 7 6 3.0167 -2.1030 2.5282 8 6 3.8141 -3.2321 3.0378 9 8 4.3538 -3.9956 2.2599 10 7 3.9454 -3.4192 4.3660 11 6 4.7378 -4.5423 4.8728 12 6 3.8890 -5.6862 5.4568 13 7 4.8939 -5.7417 6.5392 14 6 5.3133 -6.7121 7.4097 15 1 6.1596 -6.5293 8.0552 16 6 4.6507 -7.9307 7.4623 17 7 3.6838 -8.1915 6.6082 18 14 5.1313 -9.2006 8.7452 19 1 4.2438 -9.0690 9.9286 20 1 4.9911 -10.5626 8.1705 21 1 6.5410 -8.9796 9.1567 22 6 5.2654 -4.3330 6.3037 23 6 2.7998 -1.7958 1.2168 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.1719 0.5073 2.7977 32 1 3.5147 -2.8106 4.9864 33 1 5.4998 -4.8767 4.1687 34 1 2.9000 -5.3727 5.7912 35 1 3.8650 -6.5789 4.8318 36 1 3.2211 -9.0432 6.6447 37 1 6.3383 -4.1473 6.3537 38 1 4.6817 -3.6212 6.8874 39 1 3.1756 -2.3342 0.3592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030741137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:40 Heat of formation + Delta-G solvation = 53.463641 kcal Electronic energy + Delta-G solvation = -20913.668699 eV Core-core repulsion = 17665.235555 eV Total energy + Delta-G solvation = -3248.433144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.19258 -40.73276 -39.06777 -36.88895 -35.09987 -33.73972 -32.02595 -30.69219 -29.31847 -28.16802 -26.64297 -25.67910 -23.98791 -23.76191 -21.50699 -21.26375 -20.79235 -18.77039 -18.42898 -17.45778 -17.24932 -16.94391 -16.57221 -15.77095 -15.68674 -15.48202 -15.09328 -14.82290 -14.75810 -14.57492 -13.89246 -13.68830 -13.32623 -13.24107 -13.14968 -13.08184 -12.81899 -12.63591 -12.36172 -12.28610 -12.13180 -11.94604 -11.52391 -11.29961 -11.00413 -10.89202 -10.71719 -10.00622 -9.55707 -8.97887 -7.93161 -5.28622 0.59893 1.45374 1.48395 1.48780 1.57834 1.67515 2.28088 2.52587 2.57124 3.23105 3.37500 3.48307 3.62304 3.85488 3.86435 3.97341 4.11512 4.16872 4.33203 4.47800 4.52552 4.68494 4.71020 4.74077 4.85770 4.87936 4.89415 5.06542 5.18687 5.20267 5.26660 5.28248 5.46036 5.49620 5.69089 5.87010 6.16083 6.57131 6.86794 6.92682 7.29908 7.56726 8.51107 9.24637 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.049124 B = 0.002933 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.854517 B = 9543.246079 C = 9637.248742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 C -0.159 4.159 4 N -0.443 5.443 5 C 0.198 3.802 6 N -0.496 5.496 7 C -0.095 4.095 8 C 0.596 3.404 9 O -0.588 6.588 10 N -0.694 5.694 11 C 0.118 3.882 12 C 0.157 3.843 13 N -0.637 5.637 14 C -0.237 4.237 15 H 0.092 0.908 16 C -0.071 4.071 17 N -0.955 5.955 18 Si 0.986 3.014 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.263 1.263 22 C 0.123 3.877 23 C 0.043 3.957 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.245 0.755 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.032 0.968 36 H 0.249 0.751 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 24.130 -15.483 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 C -0.217 4.217 4 N -0.125 5.125 5 C -0.086 4.086 6 N -0.215 5.215 7 C -0.223 4.223 8 C 0.384 3.616 9 O -0.469 6.469 10 N -0.343 5.343 11 C 0.012 3.988 12 C 0.031 3.969 13 N -0.364 5.364 14 C -0.365 4.365 15 H 0.110 0.890 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.813 3.187 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.187 1.187 22 C -0.003 4.003 23 C -0.099 4.099 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.261 0.739 32 H 0.250 0.750 33 H 0.115 0.885 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.917 23.388 -15.103 28.687 hybrid contribution -0.185 -0.992 0.208 1.030 sum -7.102 22.396 -14.895 27.819 Atomic orbital electron populations 1.22193 0.91731 1.02962 1.04970 1.21935 0.96537 0.94738 0.84945 1.22183 1.01557 0.92999 1.04957 1.45908 1.36403 1.20891 1.09257 1.25705 1.02566 1.01669 0.78657 1.70546 1.12098 1.04863 1.34005 1.20342 1.09324 1.00681 0.91940 1.17433 0.78984 0.82919 0.82268 1.90747 1.50748 1.47993 1.57437 1.45718 1.51788 1.30013 1.06788 1.23257 0.94238 0.86453 0.94841 1.22502 0.91682 0.94748 0.88017 1.46047 1.42920 1.07594 1.39880 1.19468 1.10729 0.92831 1.13487 0.89012 1.25810 0.98480 1.00507 1.01580 1.70070 1.27375 1.23955 1.38943 0.84951 0.78248 0.77477 0.77988 1.21224 1.22179 1.18687 1.22983 0.99599 0.86373 0.91308 1.22757 0.97078 0.91084 0.98938 0.90865 0.88052 0.93061 0.86848 0.90856 0.92784 0.88102 0.73884 0.74985 0.88485 0.96101 0.94993 0.94200 0.91325 0.92179 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.24 71.98 0.67 -0.07 16 2 C 0.12 0.80 3.57 44.99 0.16 0.96 16 3 C -0.16 -0.60 9.24 71.98 0.67 0.06 16 4 N -0.44 -6.76 2.59 -505.86 -1.31 -8.07 16 5 C 0.20 3.41 11.53 180.10 2.08 5.49 16 6 N -0.50 -13.28 11.01 -188.81 -2.08 -15.35 16 7 C -0.09 -2.89 6.98 40.50 0.28 -2.61 16 8 C 0.60 22.76 7.81 86.64 0.68 23.43 16 9 O -0.59 -26.17 16.50 -4.11 -0.07 -26.23 16 10 N -0.69 -26.04 5.37 -450.78 -2.42 -28.46 16 11 C 0.12 5.16 4.40 46.75 0.21 5.37 16 12 C 0.16 8.40 7.24 86.44 0.63 9.03 16 13 N -0.64 -34.97 3.70 -716.77 -2.65 -37.62 16 14 C -0.24 -13.92 10.70 84.03 0.90 -13.02 16 15 H 0.09 5.05 7.83 -2.91 -0.02 5.03 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 17 N -0.96 -61.10 11.51 21.65 0.25 -60.85 16 18 Si 0.99 47.40 29.56 68.60 2.03 49.43 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 22 C 0.12 5.22 8.69 86.48 0.75 5.97 16 23 C 0.04 0.98 11.22 83.72 0.94 1.92 16 24 H 0.07 0.27 7.94 -2.39 -0.02 0.25 16 25 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.11 0.57 8.07 -2.39 -0.02 0.55 16 28 H 0.07 0.22 7.94 -2.39 -0.02 0.20 16 29 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.25 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.41 13.99 8.43 -92.71 -0.78 13.21 16 33 H 0.10 4.53 7.51 -2.38 -0.02 4.51 16 34 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 1.93 7.37 -2.39 -0.02 1.92 16 36 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 39 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.24 334.12 2.43 -78.81 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.27 Total: 15.58 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 8.41 Total: 32.77 kcal Atomic # 7 Polarization: -142.15 SS G_CDS: -8.21 Total: -150.36 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.07 Total: -26.23 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -81.24 2.43 -78.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030741137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.273 kcal (2) G-P(sol) polarization free energy of solvation -81.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds