Wall clock time and date at job start Tue Mar 31 2020 00:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 C 1.50693 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.35365 * 126.38646 * 275.29814 * 4 3 2 6 6 C 1.41495 * 105.50495 * 180.14031 * 5 4 3 7 7 C 1.47714 * 126.52135 * 179.84299 * 6 5 4 8 8 O 1.21576 * 119.99682 * 359.71842 * 7 6 5 9 9 N 1.34777 * 120.00296 * 179.71190 * 7 6 5 10 10 C 1.46500 * 120.00034 * 180.02562 * 9 7 6 11 11 C 1.53495 * 114.20946 * 205.00198 * 10 9 7 12 12 N 1.47064 * 87.98647 * 220.14789 * 11 10 9 13 13 C 1.36929 * 136.05710 * 207.07951 * 12 11 10 14 14 H 1.08004 * 120.00104 * 6.50631 * 13 12 11 15 15 C 1.38818 * 120.00175 * 186.49548 * 13 12 11 16 16 N 1.31615 * 119.99847 * 6.43003 * 15 13 12 17 17 Si 1.86802 * 119.99925 * 186.42380 * 15 13 12 18 18 H 1.48502 * 109.46990 * 265.01960 * 17 15 13 19 19 H 1.48491 * 109.47236 * 25.02406 * 17 15 13 20 20 H 1.48506 * 109.46777 * 145.02360 * 17 15 13 21 21 C 1.47067 * 87.88549 * 27.33957 * 12 11 10 22 22 N 1.31804 * 106.96699 * 359.58279 * 6 5 4 23 23 N 1.28475 * 110.06871 * 0.26027 * 22 6 5 24 24 H 0.96996 * 124.88410 * 180.02562 * 23 22 6 25 25 H 1.09002 * 109.47041 * 60.00806 * 1 2 3 26 26 H 1.09004 * 109.46574 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47328 * 300.00324 * 1 2 3 28 28 H 1.08994 * 109.46970 * 240.00064 * 2 1 3 29 29 H 1.09004 * 109.46651 * 119.99557 * 2 1 3 30 30 H 1.08996 * 109.47415 * 59.99729 * 3 2 1 31 31 H 1.09004 * 109.46849 * 300.00184 * 3 2 1 32 32 H 1.08005 * 127.24812 * 359.97438 * 5 4 3 33 33 H 0.96996 * 119.99967 * 359.97438 * 9 7 6 34 34 H 1.09008 * 113.28018 * 338.07062 * 10 9 7 35 35 H 1.08996 * 113.46596 * 105.36686 * 11 10 9 36 36 H 1.09006 * 113.46151 * 334.92878 * 11 10 9 37 37 H 0.97003 * 120.00226 * 179.97438 * 16 15 13 38 38 H 1.09005 * 113.46771 * 87.43754 * 21 12 11 39 39 H 1.09002 * 113.46911 * 217.87594 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3495 1.3422 1.0861 6 6 5.6717 1.3920 0.5847 7 6 6.9158 1.3233 1.3781 8 8 6.8602 1.2176 2.5880 9 7 8.1127 1.3775 0.7607 10 6 9.3465 1.3087 1.5475 11 6 10.5606 1.9619 0.8727 12 7 11.3737 0.8410 1.3681 13 6 12.6878 0.6477 1.7008 14 1 13.3701 1.4848 1.7150 15 6 13.1431 -0.6242 2.0200 16 7 12.3463 -1.6625 1.8812 17 14 14.8868 -0.8622 2.6465 18 1 15.7771 -1.2135 1.5111 19 1 15.3619 0.3952 3.2775 20 1 14.9074 -1.9576 3.6490 21 6 10.1556 0.0174 1.3426 22 7 5.5823 1.5058 -0.7253 23 7 4.3484 1.5367 -1.0820 24 1 4.0374 1.6158 -1.9973 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 4.0447 1.2470 2.1179 33 1 8.1571 1.4613 -0.2046 34 1 9.2086 1.5927 2.5909 35 1 10.8346 2.9227 1.3084 36 1 10.4862 1.9971 -0.2142 37 1 12.6645 -2.5514 2.1039 38 1 9.9744 -0.4600 0.3795 39 1 10.0845 -0.6785 2.1786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030770033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:01 Heat of formation + Delta-G solvation = 83.321158 kcal Electronic energy + Delta-G solvation = -20646.741791 eV Core-core repulsion = 17399.603366 eV Total energy + Delta-G solvation = -3247.138425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.78150 -39.28806 -37.52218 -35.70384 -33.49163 -32.11262 -31.60095 -31.08722 -27.57129 -26.76477 -24.60348 -24.53966 -22.53964 -22.24415 -21.15156 -19.87173 -19.47080 -17.85329 -16.74848 -16.62625 -15.85178 -15.66188 -15.45867 -14.86236 -14.26370 -14.13080 -13.82526 -13.81063 -13.73069 -13.39381 -12.63530 -12.60576 -12.03538 -11.82563 -11.70686 -11.43264 -11.37341 -11.20242 -10.95406 -10.86838 -10.73880 -10.38469 -10.09392 -9.73684 -9.45407 -9.40497 -9.09189 -8.76703 -8.31292 -6.89930 -5.77096 -3.09435 1.59237 2.02195 2.70424 3.40561 3.45318 3.48897 3.53609 3.65733 4.27251 4.39891 4.48553 4.57702 4.62928 4.92210 5.02708 5.23116 5.27803 5.36429 5.38216 5.48270 5.52593 5.61497 5.63787 5.64535 5.84325 5.88667 6.05167 6.26301 6.31904 6.46176 6.59915 6.80394 6.83890 7.22180 7.39466 7.54224 7.69712 7.96849 8.01820 8.57930 9.03685 9.70194 10.63023 11.41396 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044041 B = 0.002811 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.614791 B = 9959.436089 C =10158.699483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.049 4.049 4 C 0.011 3.989 5 C -0.175 4.175 6 C -0.002 4.002 7 C 0.599 3.401 8 O -0.535 6.535 9 N -0.698 5.698 10 C 0.085 3.915 11 C 0.110 3.890 12 N -0.604 5.604 13 C -0.220 4.220 14 H 0.084 0.916 15 C -0.007 4.007 16 N -0.917 5.917 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.279 1.279 20 H -0.289 1.289 21 C 0.152 3.848 22 N -0.259 5.259 23 N -0.382 5.382 24 H 0.442 0.558 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.403 0.597 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.255 0.745 38 H 0.032 0.968 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.873 6.445 -7.334 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.088 4.088 4 C -0.114 4.114 5 C -0.203 4.203 6 C -0.164 4.164 7 C 0.382 3.618 8 O -0.410 6.410 9 N -0.347 5.347 10 C -0.020 4.020 11 C -0.017 4.017 12 N -0.330 5.330 13 C -0.347 4.347 14 H 0.101 0.899 15 C -0.204 4.204 16 N -0.563 5.563 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.204 1.204 20 H -0.215 1.215 21 C 0.025 3.975 22 N -0.095 5.095 23 N -0.096 5.096 24 H 0.286 0.714 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.238 0.762 34 H 0.136 0.864 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.877 6.255 -7.242 24.798 hybrid contribution 0.343 -0.305 -0.232 0.514 sum -22.534 5.951 -7.474 24.476 Atomic orbital electron populations 1.21781 0.95264 1.02052 1.01935 1.21558 0.95948 0.95514 1.03026 1.20205 0.86350 0.98277 1.03954 1.21401 0.94945 1.07652 0.87424 1.21524 0.90506 1.08435 0.99822 1.22120 0.95521 1.08970 0.89757 1.16909 0.81728 0.76733 0.86401 1.90791 1.86729 1.50323 1.13202 1.45862 1.05306 1.72530 1.11033 1.23721 0.80357 1.01321 0.96603 1.22713 0.89051 0.93535 0.96387 1.45365 1.04720 1.08213 1.74694 1.18912 0.82772 0.93506 1.39559 0.89857 1.24873 0.98395 0.95164 1.01957 1.69865 1.35443 0.98160 1.52805 0.86059 0.83574 0.77567 0.78293 1.21601 1.20410 1.21524 1.22456 0.82981 0.92460 0.99585 1.73576 1.01386 1.19294 1.15218 1.43292 1.03001 1.53608 1.09731 0.71367 0.92738 0.92418 0.92386 0.91957 0.91008 0.89027 0.90712 0.82078 0.76244 0.86413 0.93515 0.94809 0.93528 0.95072 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 3 C -0.05 -0.27 5.77 -27.89 -0.16 -0.43 16 4 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 5 C -0.17 -2.16 10.73 -39.37 -0.42 -2.58 16 6 C 0.00 -0.03 7.13 -82.77 -0.59 -0.62 16 7 C 0.60 10.74 7.83 -12.39 -0.10 10.64 16 8 O -0.54 -11.26 16.52 5.30 0.09 -11.18 16 9 N -0.70 -12.17 5.39 -54.47 -0.29 -12.47 16 10 C 0.09 1.75 4.62 -67.68 -0.31 1.44 16 11 C 0.11 2.33 8.44 -8.51 -0.07 2.26 16 12 N -0.60 -16.08 3.76 -184.62 -0.69 -16.77 16 13 C -0.22 -6.33 10.73 -15.06 -0.16 -6.49 16 14 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 16 N -0.92 -28.07 11.81 55.49 0.66 -27.41 16 17 Si 0.92 22.51 29.56 -169.99 -5.02 17.49 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.15 3.78 7.05 -8.37 -0.06 3.72 16 22 N -0.26 -3.32 11.92 33.42 0.40 -2.92 16 23 N -0.38 -3.46 6.83 33.50 0.23 -3.24 16 24 H 0.44 2.31 8.96 -190.44 -1.71 0.61 16 25 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.40 6.24 8.48 -40.82 -0.35 5.89 16 34 H 0.12 2.57 7.45 -51.92 -0.39 2.18 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.81 7.57 -51.93 -0.39 1.41 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -35.07 335.31 -8.91 -43.99 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.03 Total: 1.41 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.29 Total: 6.05 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.29 Total: -62.81 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.07 -8.91 -43.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030770033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.308 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds