Wall clock time and date at job start Tue Mar 31 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 C 1.50693 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.35365 * 126.38646 * 275.29814 * 4 3 2 6 6 C 1.41495 * 105.50495 * 180.14031 * 5 4 3 7 7 C 1.47714 * 126.52135 * 179.84299 * 6 5 4 8 8 O 1.21576 * 119.99682 * 359.71842 * 7 6 5 9 9 N 1.34777 * 120.00296 * 179.71190 * 7 6 5 10 10 C 1.46500 * 120.00034 * 180.02562 * 9 7 6 11 11 C 1.53495 * 114.20946 * 205.00198 * 10 9 7 12 12 N 1.47064 * 87.98647 * 220.14789 * 11 10 9 13 13 C 1.36929 * 136.05710 * 207.07951 * 12 11 10 14 14 H 1.08004 * 120.00104 * 6.50631 * 13 12 11 15 15 C 1.38818 * 120.00175 * 186.49548 * 13 12 11 16 16 N 1.31615 * 119.99847 * 6.43003 * 15 13 12 17 17 Si 1.86802 * 119.99925 * 186.42380 * 15 13 12 18 18 H 1.48502 * 109.46990 * 265.01960 * 17 15 13 19 19 H 1.48491 * 109.47236 * 25.02406 * 17 15 13 20 20 H 1.48506 * 109.46777 * 145.02360 * 17 15 13 21 21 C 1.47067 * 87.88549 * 27.33957 * 12 11 10 22 22 N 1.31804 * 106.96699 * 359.58279 * 6 5 4 23 23 N 1.28475 * 110.06871 * 0.26027 * 22 6 5 24 24 H 0.96996 * 124.88410 * 180.02562 * 23 22 6 25 25 H 1.09002 * 109.47041 * 60.00806 * 1 2 3 26 26 H 1.09004 * 109.46574 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47328 * 300.00324 * 1 2 3 28 28 H 1.08994 * 109.46970 * 240.00064 * 2 1 3 29 29 H 1.09004 * 109.46651 * 119.99557 * 2 1 3 30 30 H 1.08996 * 109.47415 * 59.99729 * 3 2 1 31 31 H 1.09004 * 109.46849 * 300.00184 * 3 2 1 32 32 H 1.08005 * 127.24812 * 359.97438 * 5 4 3 33 33 H 0.96996 * 119.99967 * 359.97438 * 9 7 6 34 34 H 1.09008 * 113.28018 * 338.07062 * 10 9 7 35 35 H 1.08996 * 113.46596 * 105.36686 * 11 10 9 36 36 H 1.09006 * 113.46151 * 334.92878 * 11 10 9 37 37 H 0.97003 * 120.00226 * 179.97438 * 16 15 13 38 38 H 1.09005 * 113.46771 * 87.43754 * 21 12 11 39 39 H 1.09002 * 113.46911 * 217.87594 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3495 1.3422 1.0861 6 6 5.6717 1.3920 0.5847 7 6 6.9158 1.3233 1.3781 8 8 6.8602 1.2176 2.5880 9 7 8.1127 1.3775 0.7607 10 6 9.3465 1.3087 1.5475 11 6 10.5606 1.9619 0.8727 12 7 11.3737 0.8410 1.3681 13 6 12.6878 0.6477 1.7008 14 1 13.3701 1.4848 1.7150 15 6 13.1431 -0.6242 2.0200 16 7 12.3463 -1.6625 1.8812 17 14 14.8868 -0.8622 2.6465 18 1 15.7771 -1.2135 1.5111 19 1 15.3619 0.3952 3.2775 20 1 14.9074 -1.9576 3.6490 21 6 10.1556 0.0174 1.3426 22 7 5.5823 1.5058 -0.7253 23 7 4.3484 1.5367 -1.0820 24 1 4.0374 1.6158 -1.9973 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 4.0447 1.2470 2.1179 33 1 8.1571 1.4613 -0.2046 34 1 9.2086 1.5927 2.5909 35 1 10.8346 2.9227 1.3084 36 1 10.4862 1.9971 -0.2142 37 1 12.6645 -2.5514 2.1039 38 1 9.9744 -0.4600 0.3795 39 1 10.0845 -0.6785 2.1786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030770033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:59 Heat of formation + Delta-G solvation = 57.562739 kcal Electronic energy + Delta-G solvation = -20647.858760 eV Core-core repulsion = 17399.603366 eV Total energy + Delta-G solvation = -3248.255394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.69914 -40.90039 -39.25672 -36.22108 -35.19283 -33.90850 -32.78561 -31.84705 -29.54485 -27.37403 -26.46095 -26.10651 -24.19266 -22.84168 -21.91276 -21.47734 -21.02069 -18.79680 -18.65960 -17.91294 -17.31118 -16.96924 -16.75214 -15.91568 -15.79446 -15.54872 -15.35548 -14.79363 -14.60382 -14.57046 -13.96742 -13.78301 -13.30627 -13.21592 -13.02496 -12.93337 -12.66576 -12.43538 -12.32470 -12.10262 -12.01945 -11.89472 -11.51489 -11.42560 -11.24472 -10.89567 -10.46622 -9.95208 -9.92000 -9.01991 -7.96303 -5.30854 0.49670 1.11180 1.45256 1.48555 1.58175 1.85326 2.19615 2.33952 2.49729 3.26256 3.32202 3.48632 3.67820 3.76760 3.98505 4.18308 4.20820 4.33055 4.47624 4.49022 4.58628 4.72229 4.72494 4.87025 4.87682 4.96870 5.01152 5.10834 5.14649 5.25823 5.33830 5.37528 5.41491 5.50109 5.63506 5.83690 6.11690 6.48685 6.83877 6.88150 7.16934 7.54022 8.52709 9.22897 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044041 B = 0.002811 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.614791 B = 9959.436089 C =10158.699483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.045 4.045 4 C 0.039 3.961 5 C -0.199 4.199 6 C -0.033 4.033 7 C 0.599 3.401 8 O -0.574 6.574 9 N -0.689 5.689 10 C 0.115 3.885 11 C 0.120 3.880 12 N -0.636 5.636 13 C -0.232 4.232 14 H 0.094 0.906 15 C -0.071 4.071 16 N -0.956 5.956 17 Si 0.988 3.012 18 H -0.283 1.283 19 H -0.263 1.263 20 H -0.295 1.295 21 C 0.152 3.848 22 N -0.266 5.266 23 N -0.360 5.360 24 H 0.462 0.538 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.415 0.585 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.250 0.750 38 H 0.025 0.975 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.345 8.005 -8.865 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.084 4.084 4 C -0.088 4.088 5 C -0.227 4.227 6 C -0.192 4.192 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.339 5.339 10 C 0.008 3.992 11 C -0.006 4.006 12 N -0.362 5.362 13 C -0.360 4.360 14 H 0.112 0.888 15 C -0.264 4.264 16 N -0.604 5.604 17 Si 0.815 3.185 18 H -0.210 1.210 19 H -0.187 1.187 20 H -0.221 1.221 21 C 0.024 3.976 22 N -0.103 5.103 23 N -0.078 5.078 24 H 0.310 0.690 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.178 0.822 33 H 0.252 0.748 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -24.373 7.864 -8.831 27.090 hybrid contribution 0.642 -0.764 0.161 1.010 sum -23.732 7.100 -8.671 26.245 Atomic orbital electron populations 1.21760 0.94156 1.02171 1.02710 1.21531 0.96863 0.95320 1.02260 1.20373 0.83395 0.98635 1.05972 1.21794 0.96357 1.04565 0.86091 1.21684 0.90084 1.09917 1.00986 1.21684 0.94783 1.12141 0.90605 1.17329 0.82574 0.75407 0.86224 1.90761 1.87398 1.51980 1.15029 1.45637 1.04352 1.72547 1.11358 1.23064 0.81557 0.98101 0.96464 1.22801 0.87456 0.92760 0.97593 1.45682 1.04674 1.10346 1.75513 1.19387 0.83977 0.93936 1.38664 0.88814 1.25827 1.02798 0.94954 1.02782 1.70064 1.37507 0.98351 1.54479 0.84934 0.78463 0.77650 0.77489 1.21001 1.18719 1.22138 1.22384 0.84198 0.93402 0.97579 1.73489 1.03208 1.19484 1.14136 1.43399 1.01993 1.51432 1.10927 0.68987 0.91520 0.92708 0.92052 0.92035 0.92601 0.87984 0.87751 0.82198 0.74809 0.87687 0.91622 0.92363 0.94144 0.95744 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.12 -1.08 5.92 30.60 0.18 -0.90 16 3 C -0.05 -0.34 5.77 29.85 0.17 -0.17 16 4 C 0.04 0.60 6.48 41.40 0.27 0.87 16 5 C -0.20 -4.74 10.73 22.41 0.24 -4.50 16 6 C -0.03 -0.96 7.13 42.46 0.30 -0.65 16 7 C 0.60 21.80 7.83 86.75 0.68 22.48 16 8 O -0.57 -24.97 16.52 -3.96 -0.07 -25.04 16 9 N -0.69 -24.03 5.39 -444.51 -2.40 -26.42 16 10 C 0.11 4.77 4.62 45.55 0.21 4.98 16 11 C 0.12 4.93 8.44 83.18 0.70 5.63 16 12 N -0.64 -34.20 3.76 -738.02 -2.78 -36.98 16 13 C -0.23 -13.40 10.73 84.04 0.90 -12.50 16 14 H 0.09 5.06 7.84 -2.91 -0.02 5.04 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 16 N -0.96 -60.44 11.81 21.65 0.26 -60.19 16 17 Si 0.99 46.82 29.56 68.60 2.03 48.85 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 C 0.15 7.82 7.05 83.27 0.59 8.40 16 22 N -0.27 -6.38 11.92 -48.18 -0.57 -6.95 16 23 N -0.36 -5.54 6.83 -47.94 -0.33 -5.87 16 24 H 0.46 3.16 8.96 -219.99 -1.97 1.19 16 25 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.42 12.50 8.48 -92.71 -0.79 11.72 16 34 H 0.11 4.70 7.45 -2.38 -0.02 4.68 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 2.17 8.13 -2.38 -0.02 2.15 16 37 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.02 1.40 7.57 -2.39 -0.02 1.38 16 Total: -1.00 -78.30 335.31 -0.12 -78.42 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -1.68 Total: 14.48 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.43 Total: 19.70 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -5.82 Total: -136.41 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.04 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -78.30 -0.12 -78.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030770033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.984 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds