Wall clock time and date at job start Tue Mar 31 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 N 1.46503 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.34254 * 125.75513 * 125.00061 * 4 3 2 6 6 C 1.38049 * 107.41808 * 180.02562 * 5 4 3 7 7 C 1.47423 * 126.41467 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00502 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99949 * 179.72760 * 9 7 6 11 11 C 1.53948 * 113.73648 * 254.01188 * 10 9 7 12 12 N 1.47822 * 86.03399 * 222.08560 * 11 10 9 13 13 C 1.36929 * 134.45447 * 204.64705 * 12 11 10 14 14 H 1.07996 * 120.00235 * 173.34452 * 13 12 11 15 15 C 1.38820 * 120.00370 * 353.35088 * 13 12 11 16 16 N 1.31618 * 119.99561 * 5.06060 * 15 13 12 17 17 Si 1.86792 * 120.00154 * 185.06582 * 15 13 12 18 18 H 1.48497 * 109.47499 * 94.98457 * 17 15 13 19 19 H 1.48503 * 109.46986 * 214.98563 * 17 15 13 20 20 H 1.48500 * 109.47427 * 334.98353 * 17 15 13 21 21 C 1.47579 * 91.04779 * 24.55339 * 12 11 10 22 22 C 1.41288 * 107.16641 * 0.22394 * 6 5 4 23 23 N 1.30449 * 108.02629 * 359.61830 * 22 6 5 24 24 H 1.09004 * 109.47220 * 60.00256 * 1 2 3 25 25 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47033 * 299.99760 * 1 2 3 27 27 H 1.09006 * 109.46882 * 239.99989 * 2 1 3 28 28 H 1.09003 * 109.47235 * 120.00300 * 2 1 3 29 29 H 1.08998 * 109.46958 * 60.00194 * 3 2 1 30 30 H 1.09001 * 109.47112 * 299.99507 * 3 2 1 31 31 H 1.07997 * 126.29508 * 0.03539 * 5 4 3 32 32 H 0.97002 * 119.99780 * 359.97438 * 9 7 6 33 33 H 1.08999 * 112.94257 * 25.60734 * 10 9 7 34 34 H 1.08996 * 113.77438 * 336.35175 * 11 10 9 35 35 H 1.09004 * 113.76685 * 107.75049 * 11 10 9 36 36 H 0.97002 * 120.00188 * 180.02562 * 16 15 13 37 37 H 1.09008 * 113.76303 * 221.15389 * 21 12 11 38 38 H 1.08995 * 113.77173 * 89.75935 * 21 12 11 39 39 H 1.08004 * 125.98429 * 179.74023 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2891 2.0675 -0.8933 6 6 5.5996 1.8179 -0.5385 7 6 6.8033 2.3054 -1.2363 8 8 6.6917 2.9996 -2.2284 9 7 8.0275 1.9808 -0.7752 10 6 9.2236 2.4603 -1.4721 11 6 9.9496 1.3690 -2.2796 12 7 11.2000 1.9537 -1.7507 13 6 12.5020 1.9765 -2.1738 14 1 13.2302 2.5765 -1.6484 15 6 12.8862 1.2283 -3.2783 16 7 11.9820 0.5765 -3.9783 17 14 14.6861 1.1466 -3.7709 18 1 15.3072 -0.0649 -3.1778 19 1 14.7919 1.0831 -5.2508 20 1 15.3903 2.3566 -3.2758 21 6 10.4813 2.5049 -0.5855 22 6 5.5712 1.0029 0.6153 23 7 4.3229 0.7905 0.9289 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9559 2.6574 -1.7344 32 1 8.1165 1.4267 0.0160 33 1 9.0491 3.3785 -2.0329 34 1 9.7538 0.3569 -1.9256 35 1 9.8368 1.4728 -3.3588 36 1 12.2504 0.0535 -4.7499 37 1 10.7922 3.5139 -0.3146 38 1 10.4421 1.8272 0.2673 39 1 6.4323 0.6239 1.1459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031035286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:53 Heat of formation + Delta-G solvation = 90.068737 kcal Electronic energy + Delta-G solvation = -20668.905983 eV Core-core repulsion = 17422.060155 eV Total energy + Delta-G solvation = -3246.845828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44172 -39.10400 -37.31032 -35.69986 -33.43593 -32.06087 -31.60294 -30.25343 -27.58609 -26.63646 -24.77326 -23.68162 -22.64462 -22.02929 -20.79564 -19.81917 -19.48333 -17.81437 -16.72430 -16.14092 -15.75389 -15.65894 -15.12626 -14.86287 -14.62836 -14.15884 -13.81965 -13.74056 -13.49795 -12.91463 -12.75061 -12.55930 -12.41443 -11.85140 -11.81452 -11.41518 -11.39797 -11.38066 -11.00337 -10.84110 -10.74890 -10.39787 -10.00441 -9.71168 -9.51562 -9.44686 -8.78485 -8.77238 -8.28688 -6.87362 -5.75866 -3.08707 1.51294 2.14961 2.18349 3.41288 3.45563 3.48757 3.66756 3.75078 4.10352 4.38116 4.49535 4.58164 4.65381 4.78172 4.87856 5.00507 5.13353 5.17023 5.25327 5.35436 5.49641 5.53526 5.60814 5.65506 5.71769 5.78129 6.08279 6.25632 6.34574 6.48312 6.62921 6.68059 6.86519 7.28456 7.40728 7.44421 7.60713 7.98524 8.02910 8.70250 9.05395 9.71625 10.59862 11.41471 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045126 B = 0.002803 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.341744 B = 9986.295226 C =10114.919533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.365 5.365 5 C 0.123 3.877 6 C -0.285 4.285 7 C 0.591 3.409 8 O -0.554 6.554 9 N -0.711 5.711 10 C 0.094 3.906 11 C 0.157 3.843 12 N -0.608 5.608 13 C -0.225 4.225 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.112 3.888 22 C 0.081 3.919 23 N -0.299 5.299 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.395 0.605 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.114 0.441 10.001 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.144 5.144 5 C -0.028 4.028 6 C -0.300 4.300 7 C 0.377 3.623 8 O -0.433 6.433 9 N -0.361 5.361 10 C -0.011 4.011 11 C 0.030 3.970 12 N -0.335 5.335 13 C -0.353 4.353 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.563 5.563 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.015 4.015 22 C -0.107 4.107 23 N -0.119 5.119 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.204 0.796 32 H 0.228 0.772 33 H 0.128 0.872 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.855 0.302 9.891 24.905 hybrid contribution 1.622 -0.166 -0.437 1.688 sum -21.233 0.136 9.454 23.243 Atomic orbital electron populations 1.21712 0.94346 1.02615 1.02142 1.21811 0.96442 0.95246 1.04037 1.21908 0.73627 0.99323 1.04170 1.48563 1.06790 1.38319 1.20701 1.22984 0.90208 0.95307 0.94332 1.20423 0.93724 1.12741 1.03150 1.17242 0.82334 0.79449 0.83236 1.90761 1.86883 1.39405 1.26280 1.45901 1.05562 1.53317 1.31276 1.23879 0.81159 1.00441 0.95618 1.22663 0.82371 0.92944 0.98990 1.45722 1.04545 1.62324 1.20908 1.18984 0.83122 1.23043 1.10117 0.90034 1.24859 0.97900 0.99290 0.98300 1.69854 1.31618 1.35259 1.19548 0.86098 0.84340 0.77754 0.77577 1.21614 1.21670 1.20489 1.22876 0.89473 0.97401 0.91731 1.24098 0.95285 0.96125 0.95165 1.77106 1.01809 1.19344 1.13612 0.92347 0.91871 0.92281 0.91199 0.90243 0.89425 0.88328 0.79640 0.77166 0.87178 0.95154 0.90967 0.93551 0.93294 0.94694 0.79339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.15 0.37 -0.28 16 2 C -0.14 -0.86 6.11 -26.73 -0.16 -1.02 16 3 C 0.13 0.83 6.49 -4.04 -0.03 0.81 16 4 N -0.36 -3.73 3.65 -60.81 -0.22 -3.96 16 5 C 0.12 1.40 11.25 -16.56 -0.19 1.21 16 6 C -0.29 -3.83 6.13 -105.07 -0.64 -4.47 16 7 C 0.59 9.88 7.81 -12.52 -0.10 9.79 16 8 O -0.55 -11.34 16.52 5.27 0.09 -11.25 16 9 N -0.71 -11.40 5.36 -56.41 -0.30 -11.70 16 10 C 0.09 1.87 4.40 -70.14 -0.31 1.56 16 11 C 0.16 3.82 7.24 -2.83 -0.02 3.80 16 12 N -0.61 -15.86 3.70 -177.86 -0.66 -16.52 16 13 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 14 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -27.79 11.51 55.49 0.64 -27.15 16 17 Si 0.91 22.37 29.56 -169.99 -5.02 17.34 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.11 2.27 8.69 -2.97 -0.03 2.24 16 22 C 0.08 0.94 11.50 -16.98 -0.20 0.75 16 23 N -0.30 -3.58 12.33 30.86 0.38 -3.20 16 24 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.19 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.39 5.11 7.67 -40.82 -0.31 4.79 16 33 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 2.00 7.37 -51.93 -0.38 1.61 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.19 1.64 7.50 -52.48 -0.39 1.25 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -35.55 335.23 -7.27 -42.82 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.67 Total: 1.03 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.56 Total: 7.54 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.16 Total: -62.53 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.55 -7.27 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031035286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.889 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds