Wall clock time and date at job start Tue Mar 31 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 N 1.46503 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.34254 * 125.75513 * 125.00061 * 4 3 2 6 6 C 1.38049 * 107.41808 * 180.02562 * 5 4 3 7 7 C 1.47423 * 126.41467 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00502 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99949 * 179.72760 * 9 7 6 11 11 C 1.53948 * 113.73648 * 254.01188 * 10 9 7 12 12 N 1.47822 * 86.03399 * 222.08560 * 11 10 9 13 13 C 1.36929 * 134.45447 * 204.64705 * 12 11 10 14 14 H 1.07996 * 120.00235 * 173.34452 * 13 12 11 15 15 C 1.38820 * 120.00370 * 353.35088 * 13 12 11 16 16 N 1.31618 * 119.99561 * 5.06060 * 15 13 12 17 17 Si 1.86792 * 120.00154 * 185.06582 * 15 13 12 18 18 H 1.48497 * 109.47499 * 94.98457 * 17 15 13 19 19 H 1.48503 * 109.46986 * 214.98563 * 17 15 13 20 20 H 1.48500 * 109.47427 * 334.98353 * 17 15 13 21 21 C 1.47579 * 91.04779 * 24.55339 * 12 11 10 22 22 C 1.41288 * 107.16641 * 0.22394 * 6 5 4 23 23 N 1.30449 * 108.02629 * 359.61830 * 22 6 5 24 24 H 1.09004 * 109.47220 * 60.00256 * 1 2 3 25 25 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47033 * 299.99760 * 1 2 3 27 27 H 1.09006 * 109.46882 * 239.99989 * 2 1 3 28 28 H 1.09003 * 109.47235 * 120.00300 * 2 1 3 29 29 H 1.08998 * 109.46958 * 60.00194 * 3 2 1 30 30 H 1.09001 * 109.47112 * 299.99507 * 3 2 1 31 31 H 1.07997 * 126.29508 * 0.03539 * 5 4 3 32 32 H 0.97002 * 119.99780 * 359.97438 * 9 7 6 33 33 H 1.08999 * 112.94257 * 25.60734 * 10 9 7 34 34 H 1.08996 * 113.77438 * 336.35175 * 11 10 9 35 35 H 1.09004 * 113.76685 * 107.75049 * 11 10 9 36 36 H 0.97002 * 120.00188 * 180.02562 * 16 15 13 37 37 H 1.09008 * 113.76303 * 221.15389 * 21 12 11 38 38 H 1.08995 * 113.77173 * 89.75935 * 21 12 11 39 39 H 1.08004 * 125.98429 * 179.74023 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2891 2.0675 -0.8933 6 6 5.5996 1.8179 -0.5385 7 6 6.8033 2.3054 -1.2363 8 8 6.6917 2.9996 -2.2284 9 7 8.0275 1.9808 -0.7752 10 6 9.2236 2.4603 -1.4721 11 6 9.9496 1.3690 -2.2796 12 7 11.2000 1.9537 -1.7507 13 6 12.5020 1.9765 -2.1738 14 1 13.2302 2.5765 -1.6484 15 6 12.8862 1.2283 -3.2783 16 7 11.9820 0.5765 -3.9783 17 14 14.6861 1.1466 -3.7709 18 1 15.3072 -0.0649 -3.1778 19 1 14.7919 1.0831 -5.2508 20 1 15.3903 2.3566 -3.2758 21 6 10.4813 2.5049 -0.5855 22 6 5.5712 1.0029 0.6153 23 7 4.3229 0.7905 0.9289 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9559 2.6574 -1.7344 32 1 8.1165 1.4267 0.0160 33 1 9.0491 3.3785 -2.0329 34 1 9.7538 0.3569 -1.9256 35 1 9.8368 1.4728 -3.3588 36 1 12.2504 0.0535 -4.7499 37 1 10.7922 3.5139 -0.3146 38 1 10.4421 1.8272 0.2673 39 1 6.4323 0.6239 1.1459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031035286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:52 Heat of formation + Delta-G solvation = 64.833870 kcal Electronic energy + Delta-G solvation = -20670.000249 eV Core-core repulsion = 17422.060155 eV Total energy + Delta-G solvation = -3247.940094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34883 -40.60263 -38.96346 -36.29493 -35.07846 -33.76307 -32.56692 -31.26186 -29.39512 -27.44584 -26.59029 -25.27660 -23.55438 -23.11193 -21.64695 -21.19378 -20.93088 -18.86468 -18.72654 -17.27314 -17.01341 -16.83263 -16.61993 -15.92945 -15.70556 -15.47392 -15.27804 -15.08354 -14.54675 -14.06211 -13.80346 -13.60739 -13.28380 -13.21747 -13.15569 -12.90123 -12.80826 -12.60756 -12.36436 -12.25817 -12.07895 -11.91606 -11.65592 -11.47989 -10.89843 -10.82477 -10.54353 -10.00105 -9.57698 -8.94724 -7.91932 -5.26385 0.56579 1.19798 1.41006 1.46642 1.49071 1.58209 2.30105 2.51786 2.54825 3.26097 3.39080 3.49387 3.81399 3.90241 3.91966 3.96946 4.12873 4.28652 4.32657 4.38812 4.53905 4.56435 4.61494 4.78762 4.79242 4.82727 4.94923 5.13518 5.16605 5.24318 5.26138 5.36728 5.45033 5.50201 5.76328 5.90310 5.90674 6.52849 6.75115 6.89257 7.39959 7.59119 8.53436 9.25746 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.045126 B = 0.002803 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.341744 B = 9986.295226 C =10114.919533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.121 3.879 4 N -0.357 5.357 5 C 0.132 3.868 6 C -0.313 4.313 7 C 0.592 3.408 8 O -0.598 6.598 9 N -0.699 5.699 10 C 0.123 3.877 11 C 0.155 3.845 12 N -0.640 5.640 13 C -0.234 4.234 14 H 0.091 0.909 15 C -0.071 4.071 16 N -0.955 5.955 17 Si 0.983 3.017 18 H -0.286 1.286 19 H -0.297 1.297 20 H -0.263 1.263 21 C 0.122 3.878 22 C 0.086 3.914 23 N -0.317 5.317 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.205 0.795 32 H 0.413 0.587 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.248 0.752 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.082 0.872 11.754 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.002 3.998 4 N -0.135 5.135 5 C -0.021 4.021 6 C -0.328 4.328 7 C 0.382 3.618 8 O -0.480 6.480 9 N -0.350 5.350 10 C 0.016 3.984 11 C 0.028 3.972 12 N -0.368 5.368 13 C -0.362 4.362 14 H 0.109 0.891 15 C -0.264 4.264 16 N -0.603 5.603 17 Si 0.810 3.190 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.188 1.188 21 C -0.003 4.003 22 C -0.101 4.101 23 N -0.137 5.137 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.222 0.778 32 H 0.250 0.750 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -23.864 0.727 11.732 26.602 hybrid contribution 1.768 -0.286 -0.935 2.020 sum -22.096 0.441 10.798 24.597 Atomic orbital electron populations 1.21683 0.92635 1.02908 1.03104 1.21742 0.97821 0.94882 1.02576 1.22325 0.71432 0.99802 1.06282 1.48892 1.08008 1.36986 1.19638 1.23300 0.89856 0.94514 0.94450 1.20186 0.93028 1.15020 1.04542 1.17667 0.83096 0.78479 0.82599 1.90738 1.87475 1.41467 1.28309 1.45615 1.04384 1.53488 1.31505 1.23151 0.82649 0.97757 0.94799 1.22548 0.83523 0.94114 0.97004 1.46062 1.04357 1.62860 1.23489 1.19440 0.84470 1.22431 1.09900 0.89121 1.25765 1.02225 0.99661 0.98730 1.70060 1.33588 1.36588 1.20099 0.84997 0.79215 0.78205 0.76545 1.21256 1.22353 1.18767 1.23018 0.87817 0.98495 0.90954 1.24459 0.96022 0.95210 0.94441 1.77092 1.02083 1.20039 1.14480 0.91231 0.91970 0.91450 0.92420 0.91947 0.88011 0.85565 0.77821 0.75011 0.88902 0.95603 0.95393 0.94267 0.91619 0.91532 0.76986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.23 16 2 C -0.13 -1.44 6.11 30.59 0.19 -1.26 16 3 C 0.12 1.24 6.49 86.38 0.56 1.80 16 4 N -0.36 -6.58 3.65 -346.29 -1.26 -7.84 16 5 C 0.13 2.77 11.25 84.28 0.95 3.72 16 6 C -0.31 -7.98 6.13 -20.15 -0.12 -8.11 16 7 C 0.59 19.53 7.81 86.66 0.68 20.21 16 8 O -0.60 -24.72 16.52 -4.05 -0.07 -24.79 16 9 N -0.70 -21.72 5.36 -450.65 -2.42 -24.14 16 10 C 0.12 4.87 4.40 46.75 0.21 5.07 16 11 C 0.15 7.77 7.24 86.44 0.63 8.39 16 12 N -0.64 -33.48 3.70 -716.63 -2.65 -36.13 16 13 C -0.23 -13.32 10.70 84.04 0.90 -12.43 16 14 H 0.09 4.85 7.83 -2.91 -0.02 4.82 16 15 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 16 N -0.95 -59.75 11.51 21.65 0.25 -59.50 16 17 Si 0.98 46.46 29.56 68.60 2.03 48.49 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.12 4.74 8.69 86.49 0.75 5.50 16 22 C 0.09 1.84 11.50 85.65 0.99 2.83 16 23 N -0.32 -7.02 12.33 -56.27 -0.69 -7.71 16 24 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.13 0.62 8.06 -2.39 -0.02 0.60 16 31 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.41 9.82 7.67 -92.71 -0.71 9.11 16 33 H 0.09 4.06 7.51 -2.39 -0.02 4.04 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 1.62 7.37 -2.38 -0.02 1.61 16 36 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 39 H 0.21 3.16 7.50 -2.91 -0.02 3.14 16 Total: -1.00 -78.83 335.23 2.42 -76.40 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.34 Total: 13.40 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 6.90 Total: 21.82 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -6.78 Total: -135.33 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -78.83 2.42 -76.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031035286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.238 kcal (2) G-P(sol) polarization free energy of solvation -78.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds