Wall clock time and date at job start Tue Mar 31 2020 00:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46814 * 2 1 4 4 C 1.39680 * 126.07121 * 125.26714 * 3 2 1 5 5 C 1.38397 * 105.36092 * 180.10130 * 4 3 2 6 6 C 1.47167 * 126.88202 * 179.91051 * 5 4 3 7 7 O 1.21632 * 119.99917 * 184.99650 * 6 5 4 8 8 N 1.34774 * 120.00227 * 5.00392 * 6 5 4 9 9 C 1.46499 * 119.99960 * 185.03119 * 8 6 5 10 10 C 1.53495 * 114.20405 * 155.00356 * 9 8 6 11 11 N 1.47062 * 87.98723 * 87.51832 * 10 9 8 12 12 C 1.36939 * 136.05292 * 207.08669 * 11 10 9 13 13 H 1.08004 * 119.99929 * 354.87703 * 12 11 10 14 14 C 1.38811 * 119.99979 * 174.88019 * 12 11 10 15 15 N 1.31616 * 120.00329 * 184.54110 * 14 12 11 16 16 Si 1.86805 * 119.99852 * 4.54522 * 14 12 11 17 17 H 1.48505 * 109.47002 * 174.35282 * 16 14 12 18 18 H 1.48495 * 109.46934 * 294.35416 * 16 14 12 19 19 H 1.48499 * 109.46927 * 54.35476 * 16 14 12 20 20 C 1.47066 * 87.88720 * 27.34047 * 11 10 9 21 21 N 1.36596 * 106.23476 * 359.65759 * 5 4 3 22 22 C 1.46497 * 125.19259 * 180.20318 * 21 5 4 23 23 N 1.28442 * 109.61871 * 0.22088 * 21 5 4 24 24 H 1.09004 * 109.47160 * 300.00163 * 1 2 3 25 25 H 1.09001 * 109.47519 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47404 * 239.99720 * 2 1 3 28 28 H 1.08999 * 109.46912 * 119.99448 * 2 1 3 29 29 H 1.08005 * 127.31783 * 0.02562 * 4 3 2 30 30 H 0.96999 * 119.99461 * 5.03052 * 8 6 5 31 31 H 1.08995 * 113.28155 * 21.92903 * 9 8 6 32 32 H 1.08998 * 113.46871 * 332.73347 * 10 9 8 33 33 H 1.09004 * 113.46102 * 202.29896 * 10 9 8 34 34 H 0.97006 * 119.99650 * 5.01266 * 15 14 12 35 35 H 1.09002 * 113.46658 * 87.43920 * 20 11 10 36 36 H 1.08995 * 113.46485 * 217.87918 * 20 11 10 37 37 H 1.09004 * 109.47121 * 94.82904 * 22 21 5 38 38 H 1.09002 * 109.47120 * 214.82517 * 22 21 5 39 39 H 1.08995 * 109.47256 * 334.83005 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9209 1.9790 0.9218 5 6 3.0841 3.2943 0.5236 6 6 3.9254 4.3147 1.1691 7 8 3.9070 5.4621 0.7659 8 7 4.7165 3.9778 2.2070 9 6 5.4697 5.0125 2.9200 10 6 5.8219 4.6487 4.3690 11 7 7.0398 4.0033 3.8562 12 6 7.8600 2.9838 4.2598 13 1 7.6975 2.5057 5.2146 14 6 8.9004 2.5647 3.4420 15 7 9.6329 1.5274 3.7881 16 14 9.2609 3.4731 1.8499 17 1 10.4935 2.9204 1.2329 18 1 8.1202 3.3039 0.9143 19 1 9.4556 4.9169 2.1371 20 6 6.9928 4.9389 2.7225 21 7 2.3124 3.4541 -0.5921 22 6 2.1826 4.6960 -1.3582 23 7 1.7174 2.3494 -0.8668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.3818 1.4886 1.7666 30 1 4.7870 3.0503 2.4819 31 1 5.0501 6.0112 2.7992 32 1 5.1195 3.9506 4.8243 33 1 6.0222 5.5162 4.9978 34 1 9.4013 1.0116 4.5764 35 1 7.5018 5.8829 2.9173 36 1 7.2878 4.4880 1.7751 37 1 2.8870 4.6851 -2.1900 38 1 1.1665 4.7807 -1.7437 39 1 2.3978 5.5463 -0.7111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031141033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:58 Heat of formation + Delta-G solvation = 103.806620 kcal Electronic energy + Delta-G solvation = -21656.936950 eV Core-core repulsion = 18410.686841 eV Total energy + Delta-G solvation = -3246.250109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.57625 -39.72659 -37.96596 -34.91407 -33.69829 -32.35848 -31.71438 -30.69255 -27.89876 -26.96979 -25.45554 -23.92511 -23.50849 -22.28349 -21.00942 -19.68529 -19.19427 -17.68707 -17.54196 -16.36841 -16.35092 -15.80366 -15.02701 -14.69814 -14.37553 -14.19928 -14.04500 -13.80040 -13.70267 -13.46313 -13.06956 -12.95343 -12.53386 -12.21473 -12.10207 -11.59446 -11.45258 -11.38477 -11.12775 -10.64229 -10.60425 -10.35949 -9.98712 -9.50704 -9.21937 -9.15272 -8.97681 -8.90476 -8.59483 -7.23656 -6.36003 -3.30272 1.26127 2.34266 2.50820 3.24228 3.30503 3.38191 3.42024 3.62329 4.36707 4.54437 4.56752 4.66430 4.84821 5.01457 5.04980 5.08676 5.20633 5.25480 5.35911 5.36930 5.46087 5.60833 5.69380 5.78043 5.78803 5.82913 5.99656 6.09149 6.12023 6.15483 6.26890 6.33396 6.45341 6.71094 6.85804 7.00936 7.63188 8.03190 8.17540 8.23467 8.91338 9.43510 10.27900 11.15379 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.004931 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.632565 B = 5676.832861 C = 6262.185071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.182 4.182 5 C -0.033 4.033 6 C 0.592 3.408 7 O -0.550 6.550 8 N -0.677 5.677 9 C 0.102 3.898 10 C 0.115 3.885 11 N -0.627 5.627 12 C -0.306 4.306 13 H 0.083 0.917 14 C -0.020 4.020 15 N -0.933 5.933 16 Si 1.071 2.929 17 H -0.296 1.296 18 H -0.292 1.292 19 H -0.290 1.290 20 C 0.075 3.925 21 N -0.259 5.259 22 C 0.082 3.918 23 N -0.277 5.277 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.411 0.589 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.609 2.483 -7.356 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.211 4.211 5 C -0.161 4.161 6 C 0.378 3.622 7 O -0.429 6.429 8 N -0.326 5.326 9 C -0.005 4.005 10 C -0.012 4.012 11 N -0.356 5.356 12 C -0.432 4.432 13 H 0.101 0.899 14 C -0.219 4.219 15 N -0.575 5.575 16 Si 0.905 3.095 17 H -0.223 1.223 18 H -0.221 1.221 19 H -0.217 1.217 20 C -0.051 4.051 21 N -0.046 5.046 22 C -0.058 4.058 23 N -0.111 5.111 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.180 0.820 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.047 3.515 -9.845 19.997 hybrid contribution -0.312 -0.500 2.217 2.294 sum -17.358 3.014 -7.628 19.199 Atomic orbital electron populations 1.21706 0.94715 1.01546 1.02328 1.19874 0.96032 0.88438 1.03224 1.21954 1.00210 0.96660 0.94313 1.22215 1.03275 0.92382 1.03245 1.21377 1.03396 0.96646 0.94702 1.16871 0.79102 0.86308 0.79935 1.90724 1.68005 1.20308 1.63889 1.45188 1.43834 1.12121 1.31448 1.22493 0.92632 0.91113 0.94244 1.22705 0.89349 0.96281 0.92887 1.46257 1.29465 1.34635 1.25264 1.20151 1.11284 1.07628 1.04179 0.89926 1.25639 0.94226 0.99046 1.02995 1.70923 1.39851 1.18291 1.28404 0.83700 0.75010 0.75031 0.75800 1.22296 1.22108 1.21673 1.23378 0.93226 0.94402 0.94109 1.45504 1.30472 1.09462 1.19126 1.22405 1.03952 0.82263 0.97174 1.73052 1.20041 0.92740 1.25265 0.92771 0.92265 0.92356 0.90468 0.89869 0.82022 0.75244 0.87614 0.92981 0.92873 0.92857 0.92825 0.92173 0.89943 0.89194 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.04 -0.36 6.51 -27.88 -0.18 -0.54 16 3 C 0.02 0.33 6.49 -82.47 -0.54 -0.21 16 4 C -0.18 -2.49 10.42 -38.98 -0.41 -2.90 16 5 C -0.03 -0.49 6.96 -82.06 -0.57 -1.06 16 6 C 0.59 9.70 7.79 -12.64 -0.10 9.60 16 7 O -0.55 -9.74 14.21 5.25 0.07 -9.67 16 8 N -0.68 -11.17 5.38 -54.64 -0.29 -11.47 16 9 C 0.10 1.75 4.58 -67.68 -0.31 1.44 16 10 C 0.12 2.08 8.44 -8.51 -0.07 2.01 16 11 N -0.63 -14.61 3.69 -184.62 -0.68 -15.29 16 12 C -0.31 -8.49 11.09 -15.06 -0.17 -8.65 16 13 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 14 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 15 N -0.93 -28.90 13.70 55.49 0.76 -28.14 16 16 Si 1.07 26.92 25.12 -169.99 -4.27 22.65 16 17 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.29 -7.05 6.29 56.52 0.36 -6.69 16 19 H -0.29 -6.89 6.71 56.52 0.38 -6.51 16 20 C 0.08 1.56 5.76 -8.37 -0.05 1.52 16 21 N -0.26 -3.66 3.75 -63.88 -0.24 -3.90 16 22 C 0.08 0.89 11.01 59.85 0.66 1.55 16 23 N -0.28 -3.93 11.87 33.64 0.40 -3.53 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.71 8.12 -51.93 -0.42 0.28 16 29 H 0.16 1.91 7.62 -52.48 -0.40 1.51 16 30 H 0.41 6.62 7.83 -40.82 -0.32 6.30 16 31 H 0.11 1.66 7.51 -51.93 -0.39 1.28 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 35 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.06 1.36 4.02 -51.93 -0.21 1.15 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.12 1.35 5.96 -51.93 -0.31 1.04 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -33.41 323.32 -6.33 -39.74 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.49 Total: 3.57 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.46 Total: 1.16 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.06 Total: -62.33 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.27 Total: 22.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.41 -6.33 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031141033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.547 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds