Wall clock time and date at job start Tue Mar 31 2020 00:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46814 * 2 1 4 4 C 1.39680 * 126.07121 * 125.26714 * 3 2 1 5 5 C 1.38397 * 105.36092 * 180.10130 * 4 3 2 6 6 C 1.47167 * 126.88202 * 179.91051 * 5 4 3 7 7 O 1.21632 * 119.99917 * 184.99650 * 6 5 4 8 8 N 1.34774 * 120.00227 * 5.00392 * 6 5 4 9 9 C 1.46499 * 119.99960 * 185.03119 * 8 6 5 10 10 C 1.53495 * 114.20405 * 155.00356 * 9 8 6 11 11 N 1.47062 * 87.98723 * 87.51832 * 10 9 8 12 12 C 1.36939 * 136.05292 * 207.08669 * 11 10 9 13 13 H 1.08004 * 119.99929 * 354.87703 * 12 11 10 14 14 C 1.38811 * 119.99979 * 174.88019 * 12 11 10 15 15 N 1.31616 * 120.00329 * 184.54110 * 14 12 11 16 16 Si 1.86805 * 119.99852 * 4.54522 * 14 12 11 17 17 H 1.48505 * 109.47002 * 174.35282 * 16 14 12 18 18 H 1.48495 * 109.46934 * 294.35416 * 16 14 12 19 19 H 1.48499 * 109.46927 * 54.35476 * 16 14 12 20 20 C 1.47066 * 87.88720 * 27.34047 * 11 10 9 21 21 N 1.36596 * 106.23476 * 359.65759 * 5 4 3 22 22 C 1.46497 * 125.19259 * 180.20318 * 21 5 4 23 23 N 1.28442 * 109.61871 * 0.22088 * 21 5 4 24 24 H 1.09004 * 109.47160 * 300.00163 * 1 2 3 25 25 H 1.09001 * 109.47519 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47404 * 239.99720 * 2 1 3 28 28 H 1.08999 * 109.46912 * 119.99448 * 2 1 3 29 29 H 1.08005 * 127.31783 * 0.02562 * 4 3 2 30 30 H 0.96999 * 119.99461 * 5.03052 * 8 6 5 31 31 H 1.08995 * 113.28155 * 21.92903 * 9 8 6 32 32 H 1.08998 * 113.46871 * 332.73347 * 10 9 8 33 33 H 1.09004 * 113.46102 * 202.29896 * 10 9 8 34 34 H 0.97006 * 119.99650 * 5.01266 * 15 14 12 35 35 H 1.09002 * 113.46658 * 87.43920 * 20 11 10 36 36 H 1.08995 * 113.46485 * 217.87918 * 20 11 10 37 37 H 1.09004 * 109.47121 * 94.82904 * 22 21 5 38 38 H 1.09002 * 109.47120 * 214.82517 * 22 21 5 39 39 H 1.08995 * 109.47256 * 334.83005 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9209 1.9790 0.9218 5 6 3.0841 3.2943 0.5236 6 6 3.9254 4.3147 1.1691 7 8 3.9070 5.4621 0.7659 8 7 4.7165 3.9778 2.2070 9 6 5.4697 5.0125 2.9200 10 6 5.8219 4.6487 4.3690 11 7 7.0398 4.0033 3.8562 12 6 7.8600 2.9838 4.2598 13 1 7.6975 2.5057 5.2146 14 6 8.9004 2.5647 3.4420 15 7 9.6329 1.5274 3.7881 16 14 9.2609 3.4731 1.8499 17 1 10.4935 2.9204 1.2329 18 1 8.1202 3.3039 0.9143 19 1 9.4556 4.9169 2.1371 20 6 6.9928 4.9389 2.7225 21 7 2.3124 3.4541 -0.5921 22 6 2.1826 4.6960 -1.3582 23 7 1.7174 2.3494 -0.8668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.3818 1.4886 1.7666 30 1 4.7870 3.0503 2.4819 31 1 5.0501 6.0112 2.7992 32 1 5.1195 3.9506 4.8243 33 1 6.0222 5.5162 4.9978 34 1 9.4013 1.0116 4.5764 35 1 7.5018 5.8829 2.9173 36 1 7.2878 4.4880 1.7751 37 1 2.8870 4.6851 -2.1900 38 1 1.1665 4.7807 -1.7437 39 1 2.3978 5.5463 -0.7111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031141033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:57 Heat of formation + Delta-G solvation = 79.491723 kcal Electronic energy + Delta-G solvation = -21657.991323 eV Core-core repulsion = 18410.686841 eV Total energy + Delta-G solvation = -3247.304482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61532 -41.13436 -39.43066 -35.83911 -35.17189 -34.25174 -32.65623 -31.83731 -29.70789 -27.87051 -27.03338 -25.35201 -24.32342 -23.82269 -22.20984 -21.20494 -20.40050 -19.52450 -18.77933 -17.67258 -17.42147 -17.26050 -16.44738 -16.02003 -15.81075 -15.49779 -15.22901 -15.05537 -14.95652 -14.70624 -14.68480 -13.80060 -13.58980 -13.42781 -13.33681 -13.01370 -12.84100 -12.48646 -12.35330 -12.18555 -12.05958 -11.53862 -11.35970 -11.24134 -11.18466 -11.05340 -10.32236 -9.98907 -9.87479 -9.21400 -8.60563 -5.45694 0.12502 1.31665 1.37016 1.43982 1.49086 1.63760 2.04033 2.12111 2.50784 2.98146 3.21179 3.39757 3.46555 3.57615 3.92095 4.23673 4.26679 4.28802 4.30768 4.35086 4.46726 4.51227 4.60297 4.64014 4.66618 4.72782 4.79054 4.83758 4.89499 5.11752 5.19247 5.23234 5.36043 5.45862 5.50971 5.74601 5.96954 6.34653 6.71610 6.92225 7.02455 7.33593 8.26512 8.93668 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.004931 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.632565 B = 5676.832861 C = 6262.185071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 C 0.019 3.981 4 C -0.184 4.184 5 C -0.055 4.055 6 C 0.597 3.403 7 O -0.564 6.564 8 N -0.679 5.679 9 C 0.124 3.876 10 C 0.119 3.881 11 N -0.655 5.655 12 C -0.282 4.282 13 H 0.057 0.943 14 C -0.077 4.077 15 N -0.973 5.973 16 Si 1.108 2.892 17 H -0.309 1.309 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.065 3.935 21 N -0.263 5.263 22 C 0.077 3.923 23 N -0.287 5.287 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.176 0.824 30 H 0.412 0.588 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.392 3.494 -8.057 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.213 4.213 5 C -0.183 4.183 6 C 0.383 3.617 7 O -0.445 6.445 8 N -0.328 5.328 9 C 0.017 3.983 10 C -0.007 4.007 11 N -0.385 5.385 12 C -0.410 4.410 13 H 0.075 0.925 14 C -0.270 4.270 15 N -0.619 5.619 16 Si 0.937 3.063 17 H -0.237 1.237 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.061 4.061 21 N -0.051 5.051 22 C -0.062 4.062 23 N -0.121 5.121 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.193 0.807 30 H 0.249 0.751 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.891 4.572 -10.539 22.110 hybrid contribution 0.118 -0.791 2.484 2.610 sum -18.773 3.781 -8.055 20.775 Atomic orbital electron populations 1.21664 0.93901 1.02651 1.01573 1.20035 0.96698 0.86698 1.04288 1.22498 0.99753 0.97785 0.93674 1.22504 1.03109 0.92055 1.03637 1.21343 1.04312 0.96945 0.95716 1.16978 0.78825 0.86325 0.79555 1.90714 1.68497 1.20974 1.64270 1.45207 1.43868 1.12110 1.31659 1.22301 0.90442 0.92338 0.93205 1.22918 0.87080 0.96733 0.93923 1.46287 1.30386 1.34864 1.26923 1.20017 1.10623 1.07911 1.02441 0.92484 1.26683 0.95048 0.99547 1.05710 1.71004 1.41825 1.20187 1.28884 0.83231 0.74600 0.75215 0.73249 1.23739 1.20747 1.19392 1.23615 0.96092 0.94054 0.92315 1.45817 1.30085 1.10133 1.19058 1.22582 1.05693 0.80933 0.96971 1.73059 1.20292 0.93077 1.25716 0.93256 0.93238 0.90343 0.89816 0.88375 0.80676 0.75136 0.85215 0.91940 0.90346 0.94193 0.91211 0.93755 0.89040 0.86933 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.87 71.98 0.71 -1.48 16 2 C -0.04 -0.68 6.51 29.85 0.19 -0.48 16 3 C 0.02 0.46 6.49 43.05 0.28 0.74 16 4 C -0.18 -4.74 10.42 22.66 0.24 -4.50 16 5 C -0.05 -1.57 6.96 40.79 0.28 -1.28 16 6 C 0.60 18.39 7.79 86.59 0.67 19.07 16 7 O -0.56 -18.83 14.21 -4.13 -0.06 -18.89 16 8 N -0.68 -20.90 5.38 -445.04 -2.39 -23.30 16 9 C 0.12 3.87 4.58 45.55 0.21 4.08 16 10 C 0.12 3.95 8.44 83.18 0.70 4.65 16 11 N -0.66 -29.34 3.69 -738.01 -2.72 -32.06 16 12 C -0.28 -15.63 11.09 84.03 0.93 -14.70 16 13 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 14 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 15 N -0.97 -61.84 13.70 21.65 0.30 -61.55 16 16 Si 1.11 54.27 25.12 68.60 1.72 56.00 16 17 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 18 H -0.28 -12.94 6.29 99.48 0.63 -12.31 16 19 H -0.27 -12.02 6.71 99.48 0.67 -11.35 16 20 C 0.06 2.53 5.76 83.27 0.48 3.01 16 21 N -0.26 -7.05 3.75 -356.03 -1.33 -8.39 16 22 C 0.08 1.55 11.01 127.77 1.41 2.96 16 23 N -0.29 -7.71 11.87 -47.49 -0.56 -8.27 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 29 H 0.18 3.84 7.62 -2.91 -0.02 3.82 16 30 H 0.41 12.53 7.83 -92.71 -0.73 11.80 16 31 H 0.13 3.56 7.51 -2.39 -0.02 3.54 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.25 15.77 8.73 -92.70 -0.81 14.96 16 35 H 0.07 2.53 8.08 -2.39 -0.02 2.51 16 36 H 0.04 1.89 4.02 -2.39 -0.01 1.88 16 37 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 2.38 5.96 -2.39 -0.01 2.36 16 Total: -1.00 -71.74 323.32 1.70 -70.03 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.18 Total: 18.43 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.58 Total: 7.99 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -6.72 Total: -133.57 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 1.72 Total: 56.00 kcal Total: -71.74 1.70 -70.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031141033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.526 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds