Wall clock time and date at job start Tue Mar 31 2020 01:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47032 * 2 1 4 4 N 1.46507 * 109.47123 * 119.99542 * 2 1 3 5 5 C 1.34251 * 125.75847 * 275.00310 * 4 2 1 6 6 C 1.38042 * 107.42180 * 180.02562 * 5 4 2 7 7 C 1.47425 * 126.41775 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00000 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99743 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53951 * 113.74297 * 254.01897 * 10 9 7 12 12 N 1.47814 * 86.03758 * 222.08522 * 11 10 9 13 13 C 1.36932 * 134.45715 * 204.64642 * 12 11 10 14 14 H 1.07995 * 120.00326 * 179.86751 * 13 12 11 15 15 C 1.38817 * 119.99793 * 359.86085 * 13 12 11 16 16 N 1.31613 * 120.00127 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47068 * 119.99857 * 17 15 13 20 20 H 1.48493 * 109.47426 * 240.00266 * 17 15 13 21 21 C 1.47577 * 91.05097 * 24.55007 * 12 11 10 22 22 C 1.41291 * 107.16396 * 0.22476 * 6 5 4 23 23 N 1.30442 * 108.02776 * 359.61719 * 22 6 5 24 24 H 1.09003 * 109.47207 * 299.99842 * 1 2 3 25 25 H 1.08992 * 109.47346 * 60.00386 * 1 2 3 26 26 H 1.09006 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47461 * 239.99724 * 2 1 3 28 28 H 1.08999 * 109.47166 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46707 * 299.99958 * 3 2 1 30 30 H 1.09003 * 109.46995 * 60.00028 * 3 2 1 31 31 H 1.07999 * 126.29046 * 0.03633 * 5 4 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09000 * 112.94810 * 25.60828 * 10 9 7 34 34 H 1.09000 * 113.77101 * 336.35008 * 11 10 9 35 35 H 1.09000 * 113.76926 * 107.74289 * 11 10 9 36 36 H 0.97003 * 119.99806 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.76936 * 221.15467 * 21 12 11 38 38 H 1.08997 * 113.77659 * 89.75281 * 21 12 11 39 39 H 1.08008 * 125.98679 * 179.74239 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1903 -0.1362 2.4069 6 6 2.6633 -1.1221 3.2494 7 6 2.9954 -0.9677 4.6775 8 8 2.8593 0.1120 5.2201 9 7 3.4498 -2.0234 5.3815 10 6 3.7855 -1.8685 6.7991 11 6 5.2992 -1.8545 7.0797 12 7 4.9881 -2.7156 8.2401 13 6 5.6026 -2.9710 9.4369 14 1 5.1563 -3.6622 10.1364 15 6 6.7993 -2.3414 9.7509 16 7 7.3430 -1.4988 8.8986 17 14 7.6380 -2.6903 11.3832 18 1 6.8297 -3.6674 12.1562 19 1 8.9895 -3.2532 11.1349 20 1 7.7616 -1.4284 12.1560 21 6 3.7489 -3.1874 7.5924 22 6 2.7751 -2.3053 2.4854 23 7 2.3848 -2.0391 1.2695 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.9943 0.8920 2.6727 32 1 3.5587 -2.8845 4.9486 33 1 3.2430 -1.0532 7.2777 34 1 5.8930 -2.3500 6.3116 35 1 5.6866 -0.8725 7.3510 36 1 8.1795 -1.0592 9.1179 37 1 2.9007 -3.2675 8.2725 38 1 3.8861 -4.0752 6.9752 39 1 3.1211 -3.2630 2.8455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031241549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:00 Heat of formation + Delta-G solvation = 94.013387 kcal Electronic energy + Delta-G solvation = -20945.586310 eV Core-core repulsion = 17698.911534 eV Total energy + Delta-G solvation = -3246.674775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.50286 -39.11298 -37.32020 -36.04860 -33.40133 -31.80432 -30.57621 -30.11618 -27.81859 -27.36409 -24.76549 -24.33084 -22.79128 -22.08438 -20.19830 -19.91978 -19.48597 -17.76056 -16.73160 -15.85044 -15.70781 -15.59028 -15.16529 -14.88596 -14.48017 -14.08664 -13.79910 -13.68750 -13.25698 -13.04044 -12.73010 -12.62706 -12.54642 -11.87292 -11.82288 -11.68085 -11.38915 -11.37895 -11.09408 -10.84974 -10.74435 -10.36766 -9.98027 -9.70075 -9.52480 -9.42956 -8.77830 -8.77474 -8.27746 -6.87690 -5.73792 -3.07551 1.53411 2.12851 2.19141 3.41488 3.46017 3.49484 3.67462 3.76173 4.07550 4.38103 4.49511 4.56112 4.60486 4.68793 4.98969 5.05663 5.15051 5.18704 5.27428 5.29593 5.38551 5.51805 5.61372 5.64287 5.65187 5.73766 6.09187 6.26391 6.36063 6.48192 6.63247 6.71867 6.87041 7.29348 7.42917 7.46529 7.61909 7.99732 8.04019 8.71406 9.06391 9.72661 10.59973 11.42939 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047119 B = 0.002996 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.092054 B = 9344.563864 C = 9534.038257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.359 5.359 5 C 0.124 3.876 6 C -0.286 4.286 7 C 0.591 3.409 8 O -0.554 6.554 9 N -0.711 5.711 10 C 0.095 3.905 11 C 0.154 3.846 12 N -0.608 5.608 13 C -0.224 4.224 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.918 5.918 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.112 3.888 22 C 0.081 3.919 23 N -0.301 5.301 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.184 0.816 32 H 0.395 0.605 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 2.513 -19.885 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.139 5.139 5 C -0.027 4.027 6 C -0.301 4.301 7 C 0.377 3.623 8 O -0.433 6.433 9 N -0.361 5.361 10 C -0.010 4.010 11 C 0.027 3.973 12 N -0.335 5.335 13 C -0.351 4.351 14 H 0.100 0.900 15 C -0.204 4.204 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.014 4.014 22 C -0.107 4.107 23 N -0.121 5.121 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.201 0.799 32 H 0.228 0.772 33 H 0.128 0.872 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.243 2.903 -20.528 24.601 hybrid contribution 0.847 -0.414 1.387 1.677 sum -12.396 2.489 -19.141 22.940 Atomic orbital electron populations 1.22255 0.93330 1.03479 1.03344 1.21371 0.95023 0.92924 0.85608 1.22251 1.02670 0.93759 1.04004 1.48732 1.49154 1.07535 1.08467 1.22853 0.95726 0.99596 0.84475 1.20418 1.18900 0.94560 0.96216 1.17244 0.76425 0.84192 0.84394 1.90759 1.54936 1.26343 1.71283 1.45898 1.66251 1.12082 1.11839 1.23860 0.99406 0.99578 0.78194 1.22722 0.90252 0.96839 0.87450 1.45733 1.23014 1.49799 1.14923 1.19026 1.02876 1.21974 0.91245 0.90028 1.24823 0.97642 0.99432 0.98543 1.69845 1.20029 1.31408 1.35172 0.86026 0.79254 0.77470 0.82868 1.20427 1.21757 1.21642 1.22872 0.91069 0.93901 0.93607 1.24082 0.97276 0.99006 0.90345 1.77131 1.21241 0.92938 1.20754 0.91639 0.90284 0.91484 0.87670 0.91178 0.89742 0.91148 0.79872 0.77185 0.87164 0.95347 0.90544 0.93624 0.93271 0.94704 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 9.52 37.16 0.35 -0.58 16 2 C 0.15 1.04 3.91 -67.92 -0.27 0.77 16 3 C -0.17 -0.87 8.83 37.16 0.33 -0.54 16 4 N -0.36 -3.76 3.50 -54.31 -0.19 -3.95 16 5 C 0.12 1.46 10.39 -16.57 -0.17 1.28 16 6 C -0.29 -3.90 6.13 -105.07 -0.64 -4.54 16 7 C 0.59 9.97 7.81 -12.52 -0.10 9.88 16 8 O -0.55 -11.42 16.52 5.27 0.09 -11.33 16 9 N -0.71 -11.47 5.36 -56.41 -0.30 -11.78 16 10 C 0.09 1.89 4.40 -70.13 -0.31 1.58 16 11 C 0.15 3.76 7.33 -2.83 -0.02 3.74 16 12 N -0.61 -15.85 3.70 -177.85 -0.66 -16.51 16 13 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 14 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 16 N -0.92 -27.83 11.39 55.49 0.63 -27.20 16 17 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C 0.11 2.28 8.69 -2.97 -0.03 2.25 16 22 C 0.08 0.95 11.50 -16.98 -0.20 0.76 16 23 N -0.30 -3.70 12.50 30.86 0.39 -3.31 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.36 7.13 -51.93 -0.37 -0.01 16 31 H 0.18 1.82 7.23 -52.49 -0.38 1.45 16 32 H 0.39 5.14 7.67 -40.82 -0.31 4.82 16 33 H 0.11 2.39 7.51 -51.93 -0.39 2.00 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.19 1.66 7.50 -52.48 -0.39 1.27 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -35.51 332.14 -6.94 -42.45 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.57 Total: 1.47 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.31 Total: 7.77 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.13 Total: -62.75 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.51 -6.94 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031241549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.464 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds