Wall clock time and date at job start Tue Mar 31 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47032 * 2 1 4 4 N 1.46507 * 109.47123 * 119.99542 * 2 1 3 5 5 C 1.34251 * 125.75847 * 275.00310 * 4 2 1 6 6 C 1.38042 * 107.42180 * 180.02562 * 5 4 2 7 7 C 1.47425 * 126.41775 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00000 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99743 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53951 * 113.74297 * 254.01897 * 10 9 7 12 12 N 1.47814 * 86.03758 * 222.08522 * 11 10 9 13 13 C 1.36932 * 134.45715 * 204.64642 * 12 11 10 14 14 H 1.07995 * 120.00326 * 179.86751 * 13 12 11 15 15 C 1.38817 * 119.99793 * 359.86085 * 13 12 11 16 16 N 1.31613 * 120.00127 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47068 * 119.99857 * 17 15 13 20 20 H 1.48493 * 109.47426 * 240.00266 * 17 15 13 21 21 C 1.47577 * 91.05097 * 24.55007 * 12 11 10 22 22 C 1.41291 * 107.16396 * 0.22476 * 6 5 4 23 23 N 1.30442 * 108.02776 * 359.61719 * 22 6 5 24 24 H 1.09003 * 109.47207 * 299.99842 * 1 2 3 25 25 H 1.08992 * 109.47346 * 60.00386 * 1 2 3 26 26 H 1.09006 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47461 * 239.99724 * 2 1 3 28 28 H 1.08999 * 109.47166 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46707 * 299.99958 * 3 2 1 30 30 H 1.09003 * 109.46995 * 60.00028 * 3 2 1 31 31 H 1.07999 * 126.29046 * 0.03633 * 5 4 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09000 * 112.94810 * 25.60828 * 10 9 7 34 34 H 1.09000 * 113.77101 * 336.35008 * 11 10 9 35 35 H 1.09000 * 113.76926 * 107.74289 * 11 10 9 36 36 H 0.97003 * 119.99806 * 180.02562 * 16 15 13 37 37 H 1.09005 * 113.76936 * 221.15467 * 21 12 11 38 38 H 1.08997 * 113.77659 * 89.75281 * 21 12 11 39 39 H 1.08008 * 125.98679 * 179.74239 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1903 -0.1362 2.4069 6 6 2.6633 -1.1221 3.2494 7 6 2.9954 -0.9677 4.6775 8 8 2.8593 0.1120 5.2201 9 7 3.4498 -2.0234 5.3815 10 6 3.7855 -1.8685 6.7991 11 6 5.2992 -1.8545 7.0797 12 7 4.9881 -2.7156 8.2401 13 6 5.6026 -2.9710 9.4369 14 1 5.1563 -3.6622 10.1364 15 6 6.7993 -2.3414 9.7509 16 7 7.3430 -1.4988 8.8986 17 14 7.6380 -2.6903 11.3832 18 1 6.8297 -3.6674 12.1562 19 1 8.9895 -3.2532 11.1349 20 1 7.7616 -1.4284 12.1560 21 6 3.7489 -3.1874 7.5924 22 6 2.7751 -2.3053 2.4854 23 7 2.3848 -2.0391 1.2695 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.9943 0.8920 2.6727 32 1 3.5587 -2.8845 4.9486 33 1 3.2430 -1.0532 7.2777 34 1 5.8930 -2.3500 6.3116 35 1 5.6866 -0.8725 7.3510 36 1 8.1795 -1.0592 9.1179 37 1 2.9007 -3.2675 8.2725 38 1 3.8861 -4.0752 6.9752 39 1 3.1211 -3.2630 2.8455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031241549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:58 Heat of formation + Delta-G solvation = 68.568295 kcal Electronic energy + Delta-G solvation = -20946.689692 eV Core-core repulsion = 17698.911534 eV Total energy + Delta-G solvation = -3247.778157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.42295 -40.62031 -38.97638 -36.70158 -35.07238 -33.72395 -31.44732 -31.13396 -29.29782 -28.23420 -26.58376 -25.71144 -24.10207 -23.21108 -21.33423 -21.17315 -20.81836 -18.83232 -18.73199 -17.26356 -16.97847 -16.73557 -16.47682 -15.96721 -15.72435 -15.45339 -15.17525 -14.92693 -14.53359 -13.91027 -13.81946 -13.60185 -13.29245 -13.17454 -13.16725 -13.07935 -12.81783 -12.62321 -12.38491 -12.31221 -12.23293 -11.95441 -11.85765 -11.49477 -10.89522 -10.84240 -10.55984 -10.00821 -9.59075 -8.95018 -7.89994 -5.25288 0.55696 1.19276 1.36397 1.46828 1.48695 1.58985 2.29376 2.51190 2.54534 3.28126 3.38711 3.48249 3.77882 3.87159 3.90274 3.93877 4.07547 4.12932 4.36833 4.38693 4.56581 4.63029 4.70878 4.76538 4.78734 4.81220 4.89040 4.94789 5.16625 5.21183 5.23422 5.28299 5.44349 5.50930 5.76666 5.91417 5.91820 6.53448 6.74920 6.90142 7.39568 7.60007 8.53520 9.26992 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047119 B = 0.002996 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.092054 B = 9344.563864 C = 9534.038257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 C -0.165 4.165 4 N -0.351 5.351 5 C 0.132 3.868 6 C -0.312 4.312 7 C 0.592 3.408 8 O -0.598 6.598 9 N -0.699 5.699 10 C 0.123 3.877 11 C 0.152 3.848 12 N -0.639 5.639 13 C -0.232 4.232 14 H 0.091 0.909 15 C -0.072 4.072 16 N -0.955 5.955 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.292 1.292 20 H -0.294 1.294 21 C 0.123 3.877 22 C 0.087 3.913 23 N -0.320 5.320 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.198 0.802 32 H 0.413 0.587 33 H 0.092 0.908 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 1.554 -21.118 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.130 5.130 5 C -0.021 4.021 6 C -0.327 4.327 7 C 0.381 3.619 8 O -0.480 6.480 9 N -0.349 5.349 10 C 0.016 3.984 11 C 0.025 3.975 12 N -0.367 5.367 13 C -0.360 4.360 14 H 0.109 0.891 15 C -0.265 4.265 16 N -0.604 5.604 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.219 1.219 20 H -0.221 1.221 21 C -0.003 4.003 22 C -0.101 4.101 23 N -0.139 5.139 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.215 0.785 32 H 0.250 0.750 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.679 1.887 -21.823 26.368 hybrid contribution 1.192 -0.081 1.628 2.019 sum -13.487 1.806 -20.195 24.352 Atomic orbital electron populations 1.22231 0.92129 1.02953 1.04506 1.21781 0.95944 0.93629 0.84381 1.22266 1.01966 0.92720 1.05355 1.49105 1.47833 1.07066 1.08998 1.23090 0.94388 0.99934 0.84690 1.20183 1.21595 0.96306 0.94633 1.17659 0.75328 0.83330 0.85533 1.90736 1.56845 1.27984 1.72430 1.45604 1.65946 1.13116 1.10262 1.23138 0.95715 0.99145 0.80371 1.22606 0.93086 0.94495 0.87327 1.46067 1.24826 1.50863 1.14908 1.19477 1.02889 1.21263 0.92420 0.89111 1.25733 0.98752 0.99760 1.02215 1.70055 1.20245 1.32907 1.37222 0.84939 0.77951 0.77246 0.78744 1.18485 1.21921 1.22093 1.23018 0.89148 0.94570 0.93514 1.24453 0.96414 0.99431 0.89775 1.77109 1.21825 0.94000 1.20968 0.92013 0.87595 0.92800 0.87004 0.92248 0.87126 0.91100 0.78536 0.74993 0.89008 0.95636 0.94980 0.94333 0.91652 0.91450 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.52 71.98 0.69 -0.75 16 2 C 0.14 1.64 3.91 44.99 0.18 1.82 16 3 C -0.17 -1.33 8.83 71.98 0.64 -0.69 16 4 N -0.35 -6.80 3.50 -325.74 -1.14 -7.94 16 5 C 0.13 2.94 10.39 84.28 0.88 3.81 16 6 C -0.31 -8.19 6.13 -20.15 -0.12 -8.31 16 7 C 0.59 19.82 7.81 86.66 0.68 20.50 16 8 O -0.60 -25.06 16.52 -4.04 -0.07 -25.12 16 9 N -0.70 -21.87 5.36 -450.63 -2.42 -24.29 16 10 C 0.12 4.89 4.40 46.75 0.21 5.10 16 11 C 0.15 7.61 7.33 86.44 0.63 8.24 16 12 N -0.64 -33.38 3.70 -716.60 -2.65 -36.03 16 13 C -0.23 -13.20 10.70 84.04 0.90 -12.30 16 14 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 15 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 16 N -0.96 -59.78 11.39 21.65 0.25 -59.53 16 17 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 21 C 0.12 4.76 8.69 86.49 0.75 5.51 16 22 C 0.09 1.89 11.50 85.65 0.99 2.88 16 23 N -0.32 -7.29 12.50 -56.27 -0.70 -7.99 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.58 7.13 -2.39 -0.02 0.56 16 31 H 0.20 3.72 7.23 -2.91 -0.02 3.70 16 32 H 0.41 9.87 7.67 -92.71 -0.71 9.16 16 33 H 0.09 4.06 7.51 -2.39 -0.02 4.04 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.87 7.16 -2.39 -0.02 1.86 16 36 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 39 H 0.21 3.22 7.50 -2.91 -0.02 3.20 16 Total: -1.00 -78.72 332.14 2.51 -76.21 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.35 Total: 14.03 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.87 Total: 22.07 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -6.67 Total: -135.78 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.12 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.72 2.51 -76.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031241549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.776 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds