Wall clock time and date at job start Tue Mar 31 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47153 * 2 1 4 4 C 1.35365 * 126.38646 * 85.32447 * 3 2 1 5 5 C 1.41495 * 105.50495 * 180.14031 * 4 3 2 6 6 C 1.47714 * 126.52135 * 179.84299 * 5 4 3 7 7 O 1.21576 * 119.99682 * 359.71842 * 6 5 4 8 8 N 1.34777 * 120.00296 * 179.71190 * 6 5 4 9 9 C 1.46500 * 120.00034 * 180.02562 * 8 6 5 10 10 C 1.53495 * 114.20946 * 205.00198 * 9 8 6 11 11 N 1.47064 * 87.98647 * 220.14789 * 10 9 8 12 12 C 1.36929 * 136.05710 * 207.07951 * 11 10 9 13 13 H 1.08004 * 120.00104 * 6.50631 * 12 11 10 14 14 C 1.38818 * 120.00175 * 186.49548 * 12 11 10 15 15 N 1.31615 * 119.99847 * 6.43003 * 14 12 11 16 16 Si 1.86802 * 119.99925 * 186.42380 * 14 12 11 17 17 H 1.48502 * 109.46990 * 265.01960 * 16 14 12 18 18 H 1.48491 * 109.47236 * 25.02406 * 16 14 12 19 19 H 1.48506 * 109.46777 * 145.02360 * 16 14 12 20 20 C 1.47067 * 87.88549 * 27.33957 * 11 10 9 21 21 N 1.31804 * 106.96699 * 359.58279 * 5 4 3 22 22 N 1.28475 * 110.06871 * 0.26027 * 21 5 4 23 23 C 1.46501 * 124.88418 * 179.97438 * 22 21 5 24 24 H 1.08994 * 109.47223 * 299.99855 * 1 2 3 25 25 H 1.09007 * 109.46738 * 59.99845 * 1 2 3 26 26 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46854 * 240.00330 * 2 1 3 28 28 H 1.09000 * 109.47113 * 120.00345 * 2 1 3 29 29 H 1.08005 * 127.24812 * 359.97438 * 4 3 2 30 30 H 0.96996 * 119.99967 * 359.97438 * 8 6 5 31 31 H 1.09008 * 113.28018 * 338.07062 * 9 8 6 32 32 H 1.08996 * 113.46596 * 105.36686 * 10 9 8 33 33 H 1.09006 * 113.46151 * 334.92878 * 10 9 8 34 34 H 0.97003 * 120.00226 * 179.97438 * 15 14 12 35 35 H 1.09005 * 113.46771 * 87.43754 * 20 11 10 36 36 H 1.09002 * 113.46911 * 217.87594 * 20 11 10 37 37 H 1.09001 * 109.47034 * 89.97231 * 23 22 21 38 38 H 1.09002 * 109.47058 * 209.97845 * 23 22 21 39 39 H 1.09002 * 109.47127 * 329.98041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2163 2.2074 1.0861 5 6 2.6926 3.4413 0.5832 6 6 3.0420 4.6377 1.3759 7 8 2.9243 4.6208 2.5859 8 7 3.4914 5.7480 0.7580 9 6 3.8384 6.9343 1.5444 10 6 3.7467 8.2542 0.7662 11 7 4.9778 8.6815 1.4477 12 6 5.5413 9.8762 1.8083 13 1 4.9892 10.7951 1.6772 14 6 6.8222 9.9064 2.3427 15 7 7.5432 8.8062 2.3860 16 14 7.5224 11.5085 3.0002 17 1 8.3306 12.1666 1.9423 18 1 6.4104 12.4060 3.4039 19 1 8.3831 11.2265 4.1771 20 6 5.3406 7.2611 1.5657 21 7 2.7707 3.3183 -0.7268 22 7 2.3887 2.1444 -1.0829 23 6 2.3454 1.6608 -2.4651 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.0348 1.9488 2.1189 30 1 3.5857 5.7613 -0.2072 31 1 3.3586 6.9581 2.5229 32 1 2.8748 8.8533 1.0290 33 1 3.8663 8.1325 -0.3104 34 1 8.4384 8.8272 2.7590 35 1 5.8805 6.8777 0.6998 36 1 5.8269 7.0142 2.5095 37 1 3.3002 1.2002 -2.7189 38 1 1.5481 0.9247 -2.5677 39 1 2.1559 2.4978 -3.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031486252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:01 Heat of formation + Delta-G solvation = 98.498929 kcal Electronic energy + Delta-G solvation = -20964.101565 eV Core-core repulsion = 17717.621297 eV Total energy + Delta-G solvation = -3246.480267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.76022 -39.27290 -37.51189 -34.68573 -33.55173 -33.33424 -31.78546 -29.51325 -28.04442 -27.07691 -24.56108 -24.15142 -23.73768 -22.25486 -20.89028 -19.70374 -19.26458 -17.22367 -16.70466 -16.46162 -16.33839 -15.60943 -14.89811 -14.84707 -14.35647 -14.24124 -13.81072 -13.68862 -13.61397 -13.14908 -12.85618 -12.73718 -12.50674 -12.02870 -11.85614 -11.51860 -11.41753 -11.35499 -10.94034 -10.81924 -10.72657 -10.36850 -10.08340 -9.69976 -9.39522 -9.16476 -9.01444 -8.75856 -8.28461 -6.88906 -5.76228 -3.08526 1.63179 2.07540 2.32626 3.41171 3.45956 3.49419 3.56514 3.70089 4.18782 4.28600 4.49590 4.57963 4.73447 4.84126 4.89647 5.00810 5.14247 5.22049 5.29994 5.42531 5.49293 5.55582 5.61951 5.63249 5.78302 5.88670 6.06487 6.28674 6.38588 6.47397 6.61239 6.65489 6.83823 7.23315 7.41146 7.55394 7.77134 7.97703 8.06554 8.61566 9.04485 9.71015 10.64070 11.42230 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.003041 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.070884 B = 9205.375388 C = 9368.711961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.008 3.992 4 C -0.176 4.176 5 C -0.006 4.006 6 C 0.600 3.400 7 O -0.536 6.536 8 N -0.698 5.698 9 C 0.085 3.915 10 C 0.111 3.889 11 N -0.604 5.604 12 C -0.220 4.220 13 H 0.084 0.916 14 C -0.007 4.007 15 N -0.916 5.916 16 Si 0.915 3.085 17 H -0.289 1.289 18 H -0.279 1.279 19 H -0.289 1.289 20 C 0.152 3.848 21 N -0.262 5.262 22 N -0.284 5.284 23 C 0.086 3.914 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.403 0.597 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 -19.824 -10.099 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.204 4.204 5 C -0.167 4.167 6 C 0.384 3.616 7 O -0.412 6.412 8 N -0.348 5.348 9 C -0.020 4.020 10 C -0.017 4.017 11 N -0.330 5.330 12 C -0.348 4.348 13 H 0.101 0.899 14 C -0.204 4.204 15 N -0.562 5.562 16 Si 0.745 3.255 17 H -0.216 1.216 18 H -0.204 1.204 19 H -0.215 1.215 20 C 0.025 3.975 21 N -0.098 5.098 22 N -0.072 5.072 23 C -0.055 4.055 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.178 0.822 30 H 0.237 0.763 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.144 -19.017 -10.173 25.257 hybrid contribution 0.476 0.369 0.253 0.653 sum -12.668 -18.648 -9.920 24.630 Atomic orbital electron populations 1.21776 0.94103 1.02086 1.02674 1.20090 0.96356 0.88860 1.03810 1.21349 1.06424 0.96925 0.86945 1.21511 1.06886 0.92430 0.99585 1.22060 1.07860 0.97025 0.89738 1.16902 0.77093 0.81242 0.86358 1.90785 1.54484 1.82746 1.13145 1.45855 1.65000 1.12896 1.11026 1.23711 0.99732 0.82298 0.96247 1.22711 0.91754 0.91943 0.95270 1.45360 1.20644 1.01986 1.64968 1.18912 0.97036 0.83354 1.35450 0.89870 1.24870 0.96058 0.97576 1.01875 1.69867 1.10440 1.26240 1.49702 0.86061 0.78808 0.82313 0.78323 1.21609 1.20420 1.21529 1.22455 0.90735 0.83974 1.00312 1.73549 1.18428 1.02643 1.15165 1.45286 1.45907 1.08344 1.07697 1.22129 1.04045 1.01520 0.77789 0.91782 0.92842 0.91811 0.90838 0.89101 0.82163 0.76280 0.86433 0.93535 0.94837 0.93541 0.95093 0.91689 0.89773 0.88899 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.05 -0.32 6.00 -27.88 -0.17 -0.49 16 3 C 0.01 0.08 6.17 -82.21 -0.51 -0.43 16 4 C -0.18 -2.34 10.73 -39.37 -0.42 -2.76 16 5 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 6 C 0.60 11.11 7.83 -12.39 -0.10 11.01 16 7 O -0.54 -11.55 16.52 5.30 0.09 -11.46 16 8 N -0.70 -12.50 5.39 -54.47 -0.29 -12.79 16 9 C 0.09 1.78 4.62 -67.68 -0.31 1.47 16 10 C 0.11 2.35 8.44 -8.51 -0.07 2.28 16 11 N -0.60 -16.16 3.76 -184.62 -0.69 -16.85 16 12 C -0.22 -6.36 10.73 -15.06 -0.16 -6.52 16 13 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.92 -28.16 11.81 55.49 0.66 -27.50 16 16 Si 0.92 22.59 29.56 -169.99 -5.02 17.56 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C 0.15 3.82 7.05 -8.37 -0.06 3.76 16 21 N -0.26 -3.66 11.67 33.42 0.39 -3.27 16 22 N -0.28 -3.01 3.70 -63.85 -0.24 -3.24 16 23 C 0.09 0.47 10.89 59.85 0.65 1.12 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.31 7.42 -51.93 -0.39 -0.07 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.16 1.99 8.06 -52.48 -0.42 1.56 16 30 H 0.40 6.44 8.48 -40.82 -0.35 6.09 16 31 H 0.12 2.60 7.45 -51.92 -0.39 2.21 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.82 7.57 -51.93 -0.39 1.43 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.27 7.44 -51.93 -0.39 -0.12 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -35.91 334.56 -7.21 -43.12 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.67 Total: 1.37 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.47 Total: 8.03 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.18 Total: -63.66 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.91 -7.21 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031486252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.620 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds