Wall clock time and date at job start Tue Mar 31 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47153 * 2 1 4 4 C 1.35365 * 126.38646 * 85.32447 * 3 2 1 5 5 C 1.41495 * 105.50495 * 180.14031 * 4 3 2 6 6 C 1.47714 * 126.52135 * 179.84299 * 5 4 3 7 7 O 1.21576 * 119.99682 * 359.71842 * 6 5 4 8 8 N 1.34777 * 120.00296 * 179.71190 * 6 5 4 9 9 C 1.46500 * 120.00034 * 180.02562 * 8 6 5 10 10 C 1.53495 * 114.20946 * 205.00198 * 9 8 6 11 11 N 1.47064 * 87.98647 * 220.14789 * 10 9 8 12 12 C 1.36929 * 136.05710 * 207.07951 * 11 10 9 13 13 H 1.08004 * 120.00104 * 6.50631 * 12 11 10 14 14 C 1.38818 * 120.00175 * 186.49548 * 12 11 10 15 15 N 1.31615 * 119.99847 * 6.43003 * 14 12 11 16 16 Si 1.86802 * 119.99925 * 186.42380 * 14 12 11 17 17 H 1.48502 * 109.46990 * 265.01960 * 16 14 12 18 18 H 1.48491 * 109.47236 * 25.02406 * 16 14 12 19 19 H 1.48506 * 109.46777 * 145.02360 * 16 14 12 20 20 C 1.47067 * 87.88549 * 27.33957 * 11 10 9 21 21 N 1.31804 * 106.96699 * 359.58279 * 5 4 3 22 22 N 1.28475 * 110.06871 * 0.26027 * 21 5 4 23 23 C 1.46501 * 124.88418 * 179.97438 * 22 21 5 24 24 H 1.08994 * 109.47223 * 299.99855 * 1 2 3 25 25 H 1.09007 * 109.46738 * 59.99845 * 1 2 3 26 26 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46854 * 240.00330 * 2 1 3 28 28 H 1.09000 * 109.47113 * 120.00345 * 2 1 3 29 29 H 1.08005 * 127.24812 * 359.97438 * 4 3 2 30 30 H 0.96996 * 119.99967 * 359.97438 * 8 6 5 31 31 H 1.09008 * 113.28018 * 338.07062 * 9 8 6 32 32 H 1.08996 * 113.46596 * 105.36686 * 10 9 8 33 33 H 1.09006 * 113.46151 * 334.92878 * 10 9 8 34 34 H 0.97003 * 120.00226 * 179.97438 * 15 14 12 35 35 H 1.09005 * 113.46771 * 87.43754 * 20 11 10 36 36 H 1.09002 * 113.46911 * 217.87594 * 20 11 10 37 37 H 1.09001 * 109.47034 * 89.97231 * 23 22 21 38 38 H 1.09002 * 109.47058 * 209.97845 * 23 22 21 39 39 H 1.09002 * 109.47127 * 329.98041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2163 2.2074 1.0861 5 6 2.6926 3.4413 0.5832 6 6 3.0420 4.6377 1.3759 7 8 2.9243 4.6208 2.5859 8 7 3.4914 5.7480 0.7580 9 6 3.8384 6.9343 1.5444 10 6 3.7467 8.2542 0.7662 11 7 4.9778 8.6815 1.4477 12 6 5.5413 9.8762 1.8083 13 1 4.9892 10.7951 1.6772 14 6 6.8222 9.9064 2.3427 15 7 7.5432 8.8062 2.3860 16 14 7.5224 11.5085 3.0002 17 1 8.3306 12.1666 1.9423 18 1 6.4104 12.4060 3.4039 19 1 8.3831 11.2265 4.1771 20 6 5.3406 7.2611 1.5657 21 7 2.7707 3.3183 -0.7268 22 7 2.3887 2.1444 -1.0829 23 6 2.3454 1.6608 -2.4651 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.0348 1.9488 2.1189 30 1 3.5857 5.7613 -0.2072 31 1 3.3586 6.9581 2.5229 32 1 2.8748 8.8533 1.0290 33 1 3.8663 8.1325 -0.3104 34 1 8.4384 8.8272 2.7590 35 1 5.8805 6.8777 0.6998 36 1 5.8269 7.0142 2.5095 37 1 3.3002 1.2002 -2.7189 38 1 1.5481 0.9247 -2.5677 39 1 2.1559 2.4978 -3.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031486252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:01 Heat of formation + Delta-G solvation = 72.214798 kcal Electronic energy + Delta-G solvation = -20965.241330 eV Core-core repulsion = 17717.621297 eV Total energy + Delta-G solvation = -3247.620033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.69564 -40.91661 -39.27363 -35.44843 -35.06220 -34.32382 -33.74208 -30.33300 -29.68089 -28.29909 -26.46855 -25.56977 -24.48171 -23.76187 -21.91057 -21.45970 -20.55732 -18.76921 -18.17717 -17.60845 -17.30749 -17.16021 -16.89435 -15.83773 -15.73564 -15.49559 -15.27769 -14.82779 -14.62668 -14.22888 -13.85460 -13.66180 -13.38791 -13.33574 -13.24209 -13.16557 -12.93762 -12.66960 -12.46473 -12.32920 -12.04187 -12.01586 -11.69998 -11.43294 -11.24437 -10.90017 -10.20417 -9.92435 -9.88023 -9.02564 -7.96554 -5.31277 0.50575 1.11402 1.44834 1.48277 1.57011 1.58134 2.11208 2.34280 2.49077 3.25464 3.29348 3.45833 3.63446 3.75950 3.92397 4.16937 4.27461 4.37281 4.45378 4.45782 4.51241 4.56848 4.67962 4.71096 4.72723 4.82554 4.85837 5.08939 5.10084 5.13670 5.20909 5.33278 5.40631 5.41639 5.62718 5.82933 5.89754 6.46083 6.83322 6.91150 7.16785 7.53518 8.52227 9.22591 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.003041 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.070884 B = 9205.375388 C = 9368.711961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.027 3.973 4 C -0.203 4.203 5 C -0.040 4.040 6 C 0.600 3.400 7 O -0.575 6.575 8 N -0.689 5.689 9 C 0.114 3.886 10 C 0.120 3.880 11 N -0.634 5.634 12 C -0.233 4.233 13 H 0.094 0.906 14 C -0.070 4.070 15 N -0.956 5.956 16 Si 0.988 3.012 17 H -0.283 1.283 18 H -0.263 1.263 19 H -0.295 1.295 20 C 0.152 3.848 21 N -0.274 5.274 22 N -0.274 5.274 23 C 0.071 3.929 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.158 0.842 30 H 0.414 0.586 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.250 0.750 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 -21.079 -12.158 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.098 4.098 4 C -0.231 4.231 5 C -0.198 4.198 6 C 0.386 3.614 7 O -0.453 6.453 8 N -0.339 5.339 9 C 0.008 3.992 10 C -0.006 4.006 11 N -0.361 5.361 12 C -0.360 4.360 13 H 0.112 0.888 14 C -0.263 4.263 15 N -0.604 5.604 16 Si 0.815 3.185 17 H -0.210 1.210 18 H -0.187 1.187 19 H -0.221 1.221 20 C 0.025 3.975 21 N -0.111 5.111 22 N -0.063 5.063 23 C -0.067 4.067 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.176 0.824 30 H 0.251 0.749 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.705 -20.278 -12.290 27.901 hybrid contribution 0.875 0.606 0.772 1.315 sum -13.830 -19.672 -11.518 26.663 Atomic orbital electron populations 1.21763 0.93360 1.03283 1.02018 1.20295 0.96781 0.86110 1.05693 1.21888 1.04015 0.98130 0.85737 1.21682 1.08289 0.92397 1.00733 1.21653 1.10804 0.96703 0.90652 1.17313 0.76010 0.81877 0.86164 1.90750 1.56092 1.83531 1.14951 1.45632 1.64895 1.12077 1.11300 1.23074 0.96229 0.83715 0.96230 1.22794 0.90206 0.91534 0.96036 1.45667 1.22381 1.01869 1.66166 1.19392 0.97326 0.84563 1.34759 0.88800 1.25830 0.96658 1.01167 1.02669 1.70067 1.10531 1.28634 1.51129 0.84929 0.78101 0.78235 0.77234 1.20970 1.18727 1.22136 1.22375 0.93111 0.84138 0.97889 1.73468 1.18962 1.04533 1.14126 1.45823 1.43612 1.07235 1.09623 1.22650 1.06409 1.02641 0.75021 0.93403 0.92610 0.89687 0.87867 0.88341 0.82388 0.74902 0.87732 0.91613 0.92409 0.94147 0.95795 0.95782 0.88004 0.85512 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 71.98 0.71 -0.42 16 2 C -0.05 -0.44 6.00 29.85 0.18 -0.26 16 3 C 0.03 0.50 6.17 41.40 0.26 0.76 16 4 C -0.20 -5.37 10.73 22.41 0.24 -5.13 16 5 C -0.04 -1.27 7.13 42.46 0.30 -0.96 16 6 C 0.60 22.90 7.83 86.75 0.68 23.58 16 7 O -0.58 -25.92 16.52 -3.96 -0.07 -25.98 16 8 N -0.69 -24.99 5.39 -444.51 -2.40 -27.39 16 9 C 0.11 4.84 4.62 45.55 0.21 5.06 16 10 C 0.12 5.03 8.44 83.18 0.70 5.73 16 11 N -0.63 -34.41 3.76 -738.02 -2.78 -37.19 16 12 C -0.23 -13.52 10.73 84.04 0.90 -12.62 16 13 H 0.09 5.10 7.84 -2.91 -0.02 5.08 16 14 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 15 N -0.96 -60.67 11.81 21.65 0.26 -60.42 16 16 Si 0.99 47.01 29.56 68.60 2.03 49.04 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 20 C 0.15 7.95 7.05 83.27 0.59 8.53 16 21 N -0.27 -7.34 11.67 -48.18 -0.56 -7.91 16 22 N -0.27 -5.14 3.70 -355.93 -1.32 -6.46 16 23 C 0.07 0.52 10.89 127.77 1.39 1.91 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 25 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.10 0.35 7.42 -2.38 -0.02 0.33 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.41 13.11 8.48 -92.71 -0.79 12.33 16 31 H 0.10 4.78 7.45 -2.38 -0.02 4.76 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 34 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.02 1.42 7.57 -2.39 -0.02 1.40 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.13 0.10 7.44 -2.39 -0.02 0.08 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -81.09 334.56 2.07 -79.02 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.27 Total: 14.80 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.63 Total: 22.48 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -6.80 Total: -139.35 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -81.09 2.07 -79.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031486252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.234 kcal (2) G-P(sol) polarization free energy of solvation -81.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds