Wall clock time and date at job start Tue Mar 31 2020 00:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47309 * 2 1 4 4 C 1.35369 * 126.38347 * 85.00020 * 3 2 1 5 5 C 1.41496 * 105.50310 * 180.02562 * 4 3 2 6 6 C 1.47709 * 126.51553 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00354 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99979 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47094 * 179.97438 * 9 8 6 11 11 C 1.53941 * 113.74327 * 273.74594 * 10 9 8 12 12 N 1.47820 * 86.03544 * 222.08489 * 11 10 9 13 13 C 1.36935 * 134.45556 * 204.64550 * 12 11 10 14 14 H 1.08000 * 119.99694 * 173.34309 * 13 12 11 15 15 C 1.38814 * 119.99990 * 353.34266 * 13 12 11 16 16 N 1.31616 * 119.99912 * 5.06162 * 15 13 12 17 17 Si 1.86806 * 119.99927 * 185.06467 * 15 13 12 18 18 H 1.48502 * 109.46873 * 94.98644 * 17 15 13 19 19 H 1.48497 * 109.47110 * 214.98591 * 17 15 13 20 20 H 1.48500 * 109.47007 * 334.98917 * 17 15 13 21 21 C 1.47583 * 91.05099 * 24.54809 * 12 11 10 22 22 N 1.31807 * 106.96732 * 0.02562 * 5 4 3 23 23 N 1.28473 * 110.06861 * 359.71207 * 22 5 4 24 24 H 0.97003 * 124.88640 * 180.29187 * 23 22 5 25 25 H 1.09001 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 299.99462 * 1 2 3 27 27 H 1.08996 * 109.47489 * 59.99874 * 1 2 3 28 28 H 1.08996 * 109.47312 * 120.00891 * 2 1 3 29 29 H 1.09002 * 109.47041 * 240.00537 * 2 1 3 30 30 H 1.08009 * 127.24571 * 359.97438 * 4 3 2 31 31 H 0.96997 * 120.00019 * 0.02562 * 8 6 5 32 32 H 1.08995 * 109.47007 * 300.00048 * 9 8 6 33 33 H 1.09004 * 109.46926 * 60.00300 * 9 8 6 34 34 H 1.09002 * 112.94214 * 45.33329 * 10 9 8 35 35 H 1.09002 * 113.76825 * 336.34353 * 11 10 9 36 36 H 1.08993 * 113.77715 * 107.74361 * 11 10 9 37 37 H 0.97005 * 119.99723 * 179.97438 * 16 15 13 38 38 H 1.08996 * 113.76660 * 221.16011 * 21 12 11 39 39 H 1.08993 * 113.76813 * 89.75503 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6921 3.4415 0.5832 6 6 3.0408 4.6380 1.3760 7 8 2.9229 4.6212 2.5858 8 7 3.4897 5.7485 0.7581 9 6 3.8361 6.9351 1.5444 10 6 4.3151 8.0458 0.6075 11 6 5.8171 7.9738 0.2778 12 7 5.8208 9.4417 0.4513 13 6 6.6076 10.4606 -0.0156 14 1 6.3327 11.4871 0.1774 15 6 7.7585 10.1741 -0.7369 16 7 8.0412 8.9294 -1.0579 17 14 8.9060 11.5553 -1.2520 18 1 9.9938 11.6943 -0.2507 19 1 9.4925 11.2423 -2.5798 20 1 8.1439 12.8271 -1.3347 21 6 4.6353 9.3685 1.3272 22 7 2.7693 3.3188 -0.7269 23 7 2.3930 2.1430 -1.0824 24 1 2.3691 1.8210 -1.9972 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0235 1.9527 2.1180 31 1 3.5834 5.7621 -0.2073 32 1 2.9585 7.2759 2.0936 33 1 4.6307 6.6857 2.2477 34 1 3.6787 8.1660 -0.2692 35 1 6.4058 7.4417 1.0251 36 1 6.0282 7.6501 -0.7413 37 1 8.8453 8.7293 -1.5624 38 1 3.9045 10.1562 1.1441 39 1 4.8761 9.2470 2.3832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031552041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:01 Heat of formation + Delta-G solvation = 81.425633 kcal Electronic energy + Delta-G solvation = -20653.054779 eV Core-core repulsion = 17405.834158 eV Total energy + Delta-G solvation = -3247.220621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.83722 -39.25948 -37.84058 -34.70153 -34.25543 -32.24534 -31.89871 -29.69354 -28.70909 -26.08648 -24.74746 -24.14133 -23.64062 -21.72119 -21.25076 -20.06356 -18.82235 -17.87789 -16.90646 -16.56999 -15.98420 -15.67796 -15.05552 -14.81545 -14.56786 -14.36868 -13.98136 -13.74542 -13.53959 -13.20732 -12.83515 -12.77572 -12.28257 -12.01840 -11.60609 -11.38300 -11.28425 -10.97329 -10.93938 -10.70298 -10.52389 -10.10634 -9.77041 -9.69889 -9.53480 -9.38249 -9.15884 -8.76465 -8.71200 -6.82742 -5.74931 -3.05940 1.52495 1.95061 2.65408 3.38943 3.41430 3.46427 3.48326 3.53442 4.25885 4.36316 4.48642 4.56513 4.82120 5.05903 5.15257 5.21844 5.34084 5.38606 5.40496 5.46221 5.49019 5.71033 5.73012 5.78341 5.90798 6.10380 6.22229 6.31041 6.41579 6.61963 6.70401 6.77216 6.83004 7.27053 7.39662 7.58272 7.60272 7.86727 8.01042 8.39752 9.07698 9.73918 10.64530 11.42861 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.002929 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.916885 B = 9556.512736 C =10115.373819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.176 4.176 5 C -0.006 4.006 6 C 0.599 3.401 7 O -0.539 6.539 8 N -0.707 5.707 9 C 0.130 3.870 10 C -0.154 4.154 11 C 0.172 3.828 12 N -0.614 5.614 13 C -0.223 4.223 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.919 5.919 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.128 3.872 22 N -0.255 5.255 23 N -0.381 5.381 24 H 0.443 0.557 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.408 0.592 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 -18.703 -0.034 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.204 4.204 5 C -0.167 4.167 6 C 0.382 3.618 7 O -0.415 6.415 8 N -0.358 5.358 9 C 0.006 3.994 10 C -0.174 4.174 11 C 0.046 3.954 12 N -0.340 5.340 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.566 5.566 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.002 3.998 22 N -0.091 5.091 23 N -0.095 5.095 24 H 0.288 0.712 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.243 0.757 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.622 -17.902 -0.245 23.116 hybrid contribution 0.665 0.111 -0.539 0.863 sum -13.957 -17.791 -0.785 22.626 Atomic orbital electron populations 1.21787 0.94026 1.02227 1.02716 1.20110 0.96421 0.88712 1.04006 1.21439 1.05593 0.96916 0.87417 1.21502 1.06778 0.92367 0.99754 1.22028 1.07840 0.97027 0.89830 1.16896 0.77308 0.81249 0.86310 1.90778 1.54543 1.83008 1.13180 1.45928 1.65251 1.12912 1.11671 1.21507 1.00011 0.83709 0.94193 1.23819 1.00247 0.94660 0.98652 1.22291 0.87740 0.85196 1.00128 1.45978 1.32353 1.02863 1.52798 1.19032 1.01683 0.86340 1.27987 0.90221 1.24828 0.97981 0.96501 1.01199 1.69838 1.26878 1.16836 1.43085 0.86132 0.81156 0.81093 0.77613 1.21644 1.21747 1.20560 1.22494 0.89973 0.93351 0.93993 1.73606 1.17926 1.02393 1.15176 1.43315 1.47663 1.08599 1.09894 0.71222 0.91762 0.91813 0.92691 0.89009 0.90652 0.82098 0.75687 0.91702 0.91153 0.89188 0.95259 0.91402 0.93681 0.93691 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.33 16 2 C -0.05 -0.27 6.49 -27.88 -0.18 -0.45 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.04 10.73 -39.36 -0.42 -2.47 16 5 C -0.01 -0.08 7.13 -82.77 -0.59 -0.68 16 6 C 0.60 9.80 7.82 -12.39 -0.10 9.70 16 7 O -0.54 -10.22 16.93 5.31 0.09 -10.13 16 8 N -0.71 -11.05 5.55 -61.29 -0.34 -11.39 16 9 C 0.13 2.14 5.51 -4.04 -0.02 2.12 16 10 C -0.15 -2.86 3.93 -89.70 -0.35 -3.21 16 11 C 0.17 4.07 6.99 -2.84 -0.02 4.05 16 12 N -0.61 -16.07 3.70 -177.70 -0.66 -16.73 16 13 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 14 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 16 N -0.92 -27.72 11.51 55.49 0.64 -27.09 16 17 Si 0.91 22.46 29.56 -169.99 -5.02 17.43 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 2.65 8.51 -2.96 -0.03 2.63 16 22 N -0.26 -3.21 11.92 33.42 0.40 -2.81 16 23 N -0.38 -3.38 6.83 33.50 0.23 -3.15 16 24 H 0.44 2.31 8.96 -190.43 -1.71 0.60 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.41 5.99 8.20 -40.82 -0.33 5.65 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.07 1.76 7.36 -51.93 -0.38 1.38 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -35.02 334.76 -8.77 -43.80 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.02 Total: 0.98 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.13 Total: 4.05 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.27 Total: -61.17 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.02 -8.77 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031552041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.221 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds