Wall clock time and date at job start Tue Mar 31 2020 00:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47309 * 2 1 4 4 C 1.35369 * 126.38347 * 85.00020 * 3 2 1 5 5 C 1.41496 * 105.50310 * 180.02562 * 4 3 2 6 6 C 1.47709 * 126.51553 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00354 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99979 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47094 * 179.97438 * 9 8 6 11 11 C 1.53941 * 113.74327 * 273.74594 * 10 9 8 12 12 N 1.47820 * 86.03544 * 222.08489 * 11 10 9 13 13 C 1.36935 * 134.45556 * 204.64550 * 12 11 10 14 14 H 1.08000 * 119.99694 * 173.34309 * 13 12 11 15 15 C 1.38814 * 119.99990 * 353.34266 * 13 12 11 16 16 N 1.31616 * 119.99912 * 5.06162 * 15 13 12 17 17 Si 1.86806 * 119.99927 * 185.06467 * 15 13 12 18 18 H 1.48502 * 109.46873 * 94.98644 * 17 15 13 19 19 H 1.48497 * 109.47110 * 214.98591 * 17 15 13 20 20 H 1.48500 * 109.47007 * 334.98917 * 17 15 13 21 21 C 1.47583 * 91.05099 * 24.54809 * 12 11 10 22 22 N 1.31807 * 106.96732 * 0.02562 * 5 4 3 23 23 N 1.28473 * 110.06861 * 359.71207 * 22 5 4 24 24 H 0.97003 * 124.88640 * 180.29187 * 23 22 5 25 25 H 1.09001 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 299.99462 * 1 2 3 27 27 H 1.08996 * 109.47489 * 59.99874 * 1 2 3 28 28 H 1.08996 * 109.47312 * 120.00891 * 2 1 3 29 29 H 1.09002 * 109.47041 * 240.00537 * 2 1 3 30 30 H 1.08009 * 127.24571 * 359.97438 * 4 3 2 31 31 H 0.96997 * 120.00019 * 0.02562 * 8 6 5 32 32 H 1.08995 * 109.47007 * 300.00048 * 9 8 6 33 33 H 1.09004 * 109.46926 * 60.00300 * 9 8 6 34 34 H 1.09002 * 112.94214 * 45.33329 * 10 9 8 35 35 H 1.09002 * 113.76825 * 336.34353 * 11 10 9 36 36 H 1.08993 * 113.77715 * 107.74361 * 11 10 9 37 37 H 0.97005 * 119.99723 * 179.97438 * 16 15 13 38 38 H 1.08996 * 113.76660 * 221.16011 * 21 12 11 39 39 H 1.08993 * 113.76813 * 89.75503 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6921 3.4415 0.5832 6 6 3.0408 4.6380 1.3760 7 8 2.9229 4.6212 2.5858 8 7 3.4897 5.7485 0.7581 9 6 3.8361 6.9351 1.5444 10 6 4.3151 8.0458 0.6075 11 6 5.8171 7.9738 0.2778 12 7 5.8208 9.4417 0.4513 13 6 6.6076 10.4606 -0.0156 14 1 6.3327 11.4871 0.1774 15 6 7.7585 10.1741 -0.7369 16 7 8.0412 8.9294 -1.0579 17 14 8.9060 11.5553 -1.2520 18 1 9.9938 11.6943 -0.2507 19 1 9.4925 11.2423 -2.5798 20 1 8.1439 12.8271 -1.3347 21 6 4.6353 9.3685 1.3272 22 7 2.7693 3.3188 -0.7269 23 7 2.3930 2.1430 -1.0824 24 1 2.3691 1.8210 -1.9972 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0235 1.9527 2.1180 31 1 3.5834 5.7621 -0.2073 32 1 2.9585 7.2759 2.0936 33 1 4.6307 6.6857 2.2477 34 1 3.6787 8.1660 -0.2692 35 1 6.4058 7.4417 1.0251 36 1 6.0282 7.6501 -0.7413 37 1 8.8453 8.7293 -1.5624 38 1 3.9045 10.1562 1.1441 39 1 4.8761 9.2470 2.3832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031552041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:00 Heat of formation + Delta-G solvation = 55.867548 kcal Electronic energy + Delta-G solvation = -20654.163061 eV Core-core repulsion = 17405.834158 eV Total energy + Delta-G solvation = -3248.328903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -43.69141 -40.64042 -39.53038 -35.79860 -35.16229 -34.17993 -32.92781 -30.74981 -30.11574 -27.80742 -26.55387 -25.07148 -24.58711 -23.38025 -22.03502 -21.40540 -20.36985 -18.74948 -18.63418 -17.93188 -17.09023 -16.99414 -16.81460 -16.05466 -15.69357 -15.54515 -15.25699 -14.81981 -14.77359 -14.46391 -14.14308 -14.01304 -13.32306 -13.29022 -13.10306 -12.88732 -12.55060 -12.48222 -12.22714 -12.07058 -11.84925 -11.71250 -11.62088 -11.35119 -11.12728 -10.87201 -10.49343 -10.02826 -9.95153 -8.91297 -7.92280 -5.24797 0.50760 1.12283 1.44678 1.47196 1.55959 1.87753 2.25819 2.36213 2.47344 3.27943 3.36594 3.42548 3.69230 3.75925 4.00367 4.08300 4.33847 4.37765 4.44478 4.54636 4.60408 4.71791 4.78434 4.83514 4.87400 4.87738 5.09796 5.10359 5.22226 5.25292 5.31449 5.38809 5.42872 5.53709 5.63935 5.92856 6.11149 6.46129 6.87235 6.91263 7.14699 7.60128 8.56878 9.25542 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.002929 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.916885 B = 9556.512736 C =10115.373819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.036 3.964 4 C -0.199 4.199 5 C -0.035 4.035 6 C 0.598 3.402 7 O -0.572 6.572 8 N -0.704 5.704 9 C 0.141 3.859 10 C -0.117 4.117 11 C 0.169 3.831 12 N -0.646 5.646 13 C -0.235 4.235 14 H 0.086 0.914 15 C -0.070 4.070 16 N -0.953 5.953 17 Si 0.979 3.021 18 H -0.289 1.289 19 H -0.294 1.294 20 H -0.265 1.265 21 C 0.128 3.872 22 N -0.271 5.271 23 N -0.363 5.363 24 H 0.461 0.539 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.013 0.987 36 H 0.038 0.962 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 -19.571 -0.563 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.091 4.091 4 C -0.227 4.227 5 C -0.195 4.195 6 C 0.383 3.617 7 O -0.450 6.450 8 N -0.355 5.355 9 C 0.016 3.984 10 C -0.136 4.136 11 C 0.044 3.956 12 N -0.373 5.373 13 C -0.364 4.364 14 H 0.103 0.897 15 C -0.263 4.263 16 N -0.602 5.602 17 Si 0.807 3.193 18 H -0.216 1.216 19 H -0.220 1.220 20 H -0.189 1.189 21 C 0.003 3.997 22 N -0.109 5.109 23 N -0.080 5.080 24 H 0.309 0.691 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.018 -18.761 -0.786 24.681 hybrid contribution 1.024 0.296 -0.388 1.134 sum -14.994 -18.465 -1.174 23.815 Atomic orbital electron populations 1.21780 0.93555 1.03233 1.02070 1.20298 0.96616 0.86244 1.05821 1.21911 1.03083 0.97920 0.86150 1.21691 1.07941 0.92185 1.00912 1.21802 1.10105 0.97048 0.90537 1.17208 0.76521 0.81799 0.86143 1.90745 1.56030 1.83677 1.14553 1.45861 1.65091 1.12692 1.11821 1.21298 1.00219 0.83398 0.93442 1.23427 0.96761 0.94453 0.99003 1.22189 0.91214 0.84275 0.97955 1.46398 1.33471 1.03248 1.54173 1.19457 1.02067 0.87413 1.27438 0.89669 1.25702 0.99734 0.98923 1.01948 1.70028 1.27123 1.18838 1.44225 0.85051 0.78829 0.78731 0.76695 1.21635 1.22033 1.18932 1.22693 0.88237 0.94766 0.93998 1.73525 1.18683 1.04108 1.14536 1.43423 1.45982 1.07593 1.11042 0.69135 0.89955 0.93029 0.92820 0.87977 0.88078 0.81909 0.75124 0.89962 0.92408 0.87945 0.96944 0.94367 0.94294 0.91734 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.27 16 2 C -0.05 -0.35 6.49 29.85 0.19 -0.16 16 3 C 0.04 0.55 6.48 41.40 0.27 0.82 16 4 C -0.20 -4.50 10.73 22.41 0.24 -4.26 16 5 C -0.04 -0.99 7.13 42.45 0.30 -0.69 16 6 C 0.60 19.74 7.82 86.75 0.68 20.42 16 7 O -0.57 -21.98 16.93 -3.93 -0.07 -22.05 16 8 N -0.70 -21.95 5.55 -466.09 -2.59 -24.53 16 9 C 0.14 4.55 5.51 86.38 0.48 5.02 16 10 C -0.12 -4.26 3.93 -10.13 -0.04 -4.30 16 11 C 0.17 8.21 6.99 86.44 0.60 8.81 16 12 N -0.65 -33.99 3.70 -716.11 -2.65 -36.64 16 13 C -0.24 -13.52 10.70 84.03 0.90 -12.62 16 14 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 15 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 16 N -0.95 -58.95 11.51 21.65 0.25 -58.70 16 17 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.13 5.13 8.51 86.49 0.74 5.87 16 22 N -0.27 -6.60 11.92 -48.18 -0.57 -7.17 16 23 N -0.36 -5.78 6.83 -47.93 -0.33 -6.10 16 24 H 0.46 3.63 8.96 -219.99 -1.97 1.66 16 25 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.41 12.08 8.20 -92.71 -0.76 11.32 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.06 2.05 7.87 -2.38 -0.02 2.03 16 34 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.01 0.65 7.92 -2.39 -0.02 0.63 16 36 H 0.04 2.06 7.36 -2.39 -0.02 2.04 16 37 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -76.98 334.76 -0.05 -77.03 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -1.66 Total: 14.55 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.54 Total: 15.01 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -5.89 Total: -133.16 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.07 Total: -22.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.98 -0.05 -77.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031552041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.893 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds