Wall clock time and date at job start Tue Mar 31 2020 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47033 * 2 1 4 4 N 1.30451 * 125.98893 * 270.16619 * 3 2 1 5 5 N 1.39942 * 108.89558 * 180.26235 * 4 3 2 6 6 H 0.96994 * 125.75201 * 179.73375 * 5 4 3 7 7 C 1.34259 * 108.49142 * 359.73988 * 5 4 3 8 8 C 1.38039 * 107.41864 * 0.02562 * 7 5 4 9 9 C 1.47430 * 126.41506 * 179.97438 * 8 7 5 10 10 O 1.21603 * 120.00081 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99963 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27989 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53947 * 113.74226 * 273.73938 * 13 12 11 15 15 N 1.47815 * 86.03999 * 222.08265 * 14 13 12 16 16 C 1.36929 * 134.45727 * 204.64302 * 15 14 13 17 17 H 1.08008 * 119.99899 * 179.86743 * 16 15 14 18 18 C 1.38814 * 120.00289 * 359.86623 * 16 15 14 19 19 N 1.31615 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47088 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46848 * 119.99868 * 20 18 16 23 23 H 1.48500 * 109.46708 * 239.99727 * 20 18 16 24 24 C 1.47583 * 91.04788 * 24.54761 * 15 14 13 25 25 H 1.09006 * 109.46967 * 60.00264 * 1 2 3 26 26 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47463 * 300.00188 * 1 2 3 28 28 H 1.09000 * 109.47675 * 240.00314 * 2 1 3 29 29 H 1.09001 * 109.47239 * 119.99346 * 2 1 3 30 30 H 1.07999 * 126.29099 * 179.97438 * 7 5 4 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.08994 * 112.94815 * 45.32919 * 13 12 11 35 35 H 1.09005 * 113.76764 * 336.35080 * 14 13 12 36 36 H 1.08998 * 113.77347 * 107.74000 * 14 13 12 37 37 H 0.97002 * 120.00091 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.77139 * 221.14999 * 24 15 14 39 39 H 1.08999 * 113.76764 * 89.75563 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2849 2.1446 -1.0555 5 7 2.7376 3.4033 -0.6442 6 1 2.9983 4.1310 -1.2300 7 6 2.7502 3.4335 0.6980 8 6 2.3096 2.2035 1.1432 9 6 2.1613 1.7832 2.5486 10 8 1.7610 0.6650 2.8098 11 7 2.4693 2.6382 3.5438 12 6 2.3278 2.2184 4.9402 13 6 2.7463 3.3653 5.8624 14 6 4.2573 3.4064 6.1538 15 7 3.8759 3.7042 7.5505 16 6 4.4918 4.3324 8.5997 17 1 3.9828 4.4249 9.5479 18 6 5.7704 4.8503 8.4449 19 7 6.3908 4.7371 7.2897 20 14 6.6109 5.7067 9.8766 21 1 5.7085 5.7004 11.0559 22 1 7.8682 4.9912 10.2122 23 1 6.9244 7.1084 9.4999 24 6 2.5644 3.0550 7.3592 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.0508 4.2668 1.3158 31 1 2.7890 3.5300 3.3354 32 1 1.2885 1.9549 5.1367 33 1 2.9635 1.3527 5.1256 34 1 2.3314 4.3267 5.5600 35 1 4.7550 2.4446 6.0297 36 1 4.7788 4.2238 5.6557 37 1 7.2844 5.0987 7.1816 38 1 1.7366 3.5923 7.8219 39 1 2.5637 1.9897 7.5901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031806237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:58 Heat of formation + Delta-G solvation = 80.263187 kcal Electronic energy + Delta-G solvation = -21027.557902 eV Core-core repulsion = 17780.286874 eV Total energy + Delta-G solvation = -3247.271029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.56114 -39.11233 -37.84426 -34.68165 -33.97065 -32.21815 -30.73182 -30.43854 -28.55464 -25.86110 -24.79076 -24.13546 -23.16291 -21.88933 -20.33321 -19.75331 -19.11211 -18.27266 -16.76299 -16.30850 -15.64458 -15.46780 -15.01870 -14.78950 -14.46545 -14.12013 -14.08345 -13.71840 -13.35301 -12.98875 -12.81725 -12.41768 -12.32066 -11.58697 -11.43092 -11.34047 -11.27043 -11.01241 -10.87264 -10.72902 -10.55559 -9.98857 -9.74981 -9.72462 -9.61429 -9.41784 -9.03500 -8.81841 -8.66409 -6.88792 -5.78682 -3.10379 1.36641 2.05948 2.50587 3.37198 3.42732 3.45226 3.46245 3.55734 4.31960 4.44032 4.48268 4.94743 5.09294 5.19035 5.26911 5.33391 5.34406 5.36718 5.45612 5.55221 5.68467 5.85274 5.89412 6.06913 6.08985 6.16870 6.26798 6.35327 6.39075 6.58344 6.66605 6.78575 6.89238 7.20827 7.34869 7.35417 7.53703 7.77247 7.96600 8.47126 9.03386 9.69502 10.58829 11.38607 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003272 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.750167 B = 8554.896773 C = 9180.249857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.463 5.463 6 H 0.443 0.557 7 C 0.105 3.895 8 C -0.283 4.283 9 C 0.589 3.411 10 O -0.545 6.545 11 N -0.721 5.721 12 C 0.133 3.867 13 C -0.153 4.153 14 C 0.168 3.832 15 N -0.614 5.614 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.128 3.872 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.188 0.812 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.252 0.748 38 H 0.045 0.955 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -2.769 -15.946 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.125 5.125 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.048 4.048 8 C -0.298 4.298 9 C 0.376 3.624 10 O -0.424 6.424 11 N -0.371 5.371 12 C 0.009 3.991 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.340 5.340 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.002 3.998 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.205 0.795 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.400 -3.366 -16.820 19.560 hybrid contribution 1.066 1.467 1.299 2.231 sum -8.334 -1.899 -15.521 17.719 Atomic orbital electron populations 1.21611 0.94024 1.02035 1.01931 1.20129 0.96498 0.88067 1.04157 1.22483 0.94931 0.96919 0.88705 1.77148 1.22016 0.90781 1.22526 1.46095 1.51618 1.13523 1.05502 0.71222 1.23233 0.96873 0.98992 0.85656 1.20385 1.19102 0.95468 0.94875 1.17225 0.77111 0.84609 0.83422 1.90727 1.47193 1.20151 1.84278 1.45887 1.67777 1.16946 1.06505 1.21425 1.01020 0.97968 0.78728 1.23793 1.01227 0.97207 0.95065 1.22356 0.89704 0.98524 0.85107 1.45999 1.13977 1.63712 1.10275 1.19088 0.97451 1.27723 0.90606 0.90213 1.24774 0.96873 1.01550 0.97363 1.69821 1.13808 1.50509 1.22816 0.86054 0.79418 0.78941 0.81407 1.20463 1.21762 1.21742 1.22490 0.90161 0.96011 0.91181 0.93110 0.91932 0.92090 0.90732 0.87921 0.79531 0.76905 0.91910 0.91361 0.89307 0.95448 0.91064 0.93768 0.93685 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.15 0.37 -1.05 16 2 C -0.05 -0.56 5.97 -27.89 -0.17 -0.73 16 3 C 0.14 1.74 6.52 -82.02 -0.53 1.20 16 4 N -0.30 -3.60 12.63 33.90 0.43 -3.17 16 5 N -0.46 -3.97 7.29 30.85 0.22 -3.74 16 6 H 0.44 2.16 8.96 -182.72 -1.64 0.52 16 7 C 0.11 0.93 11.52 -16.56 -0.19 0.74 16 8 C -0.28 -3.50 6.13 -105.06 -0.64 -4.14 16 9 C 0.59 8.51 7.81 -12.52 -0.10 8.41 16 10 O -0.54 -9.41 14.92 5.27 0.08 -9.33 16 11 N -0.72 -9.54 5.54 -61.39 -0.34 -9.88 16 12 C 0.13 2.00 5.51 -4.04 -0.02 1.98 16 13 C -0.15 -2.64 3.93 -89.69 -0.35 -2.99 16 14 C 0.17 3.77 7.08 -2.84 -0.02 3.75 16 15 N -0.61 -15.47 3.70 -177.66 -0.66 -16.12 16 16 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16 20 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.13 2.53 8.51 -2.96 -0.03 2.51 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.31 6.56 -51.93 -0.34 0.97 16 30 H 0.19 0.97 7.46 -52.49 -0.39 0.58 16 31 H 0.40 4.32 7.40 -40.82 -0.30 4.02 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.14 7.88 -51.93 -0.41 0.73 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 36 H 0.07 1.74 7.17 -51.93 -0.37 1.37 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -34.61 329.99 -8.42 -43.03 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.79 Total: 0.60 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.94 Total: 3.00 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.29 Total: -59.19 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.61 -8.42 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031806237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.290 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds