Wall clock time and date at job start Tue Mar 31 2020 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47033 * 2 1 4 4 N 1.30451 * 125.98893 * 270.16619 * 3 2 1 5 5 N 1.39942 * 108.89558 * 180.26235 * 4 3 2 6 6 H 0.96994 * 125.75201 * 179.73375 * 5 4 3 7 7 C 1.34259 * 108.49142 * 359.73988 * 5 4 3 8 8 C 1.38039 * 107.41864 * 0.02562 * 7 5 4 9 9 C 1.47430 * 126.41506 * 179.97438 * 8 7 5 10 10 O 1.21603 * 120.00081 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99963 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27989 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53947 * 113.74226 * 273.73938 * 13 12 11 15 15 N 1.47815 * 86.03999 * 222.08265 * 14 13 12 16 16 C 1.36929 * 134.45727 * 204.64302 * 15 14 13 17 17 H 1.08008 * 119.99899 * 179.86743 * 16 15 14 18 18 C 1.38814 * 120.00289 * 359.86623 * 16 15 14 19 19 N 1.31615 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47088 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46848 * 119.99868 * 20 18 16 23 23 H 1.48500 * 109.46708 * 239.99727 * 20 18 16 24 24 C 1.47583 * 91.04788 * 24.54761 * 15 14 13 25 25 H 1.09006 * 109.46967 * 60.00264 * 1 2 3 26 26 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47463 * 300.00188 * 1 2 3 28 28 H 1.09000 * 109.47675 * 240.00314 * 2 1 3 29 29 H 1.09001 * 109.47239 * 119.99346 * 2 1 3 30 30 H 1.07999 * 126.29099 * 179.97438 * 7 5 4 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.08994 * 112.94815 * 45.32919 * 13 12 11 35 35 H 1.09005 * 113.76764 * 336.35080 * 14 13 12 36 36 H 1.08998 * 113.77347 * 107.74000 * 14 13 12 37 37 H 0.97002 * 120.00091 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.77139 * 221.14999 * 24 15 14 39 39 H 1.08999 * 113.76764 * 89.75563 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2849 2.1446 -1.0555 5 7 2.7376 3.4033 -0.6442 6 1 2.9983 4.1310 -1.2300 7 6 2.7502 3.4335 0.6980 8 6 2.3096 2.2035 1.1432 9 6 2.1613 1.7832 2.5486 10 8 1.7610 0.6650 2.8098 11 7 2.4693 2.6382 3.5438 12 6 2.3278 2.2184 4.9402 13 6 2.7463 3.3653 5.8624 14 6 4.2573 3.4064 6.1538 15 7 3.8759 3.7042 7.5505 16 6 4.4918 4.3324 8.5997 17 1 3.9828 4.4249 9.5479 18 6 5.7704 4.8503 8.4449 19 7 6.3908 4.7371 7.2897 20 14 6.6109 5.7067 9.8766 21 1 5.7085 5.7004 11.0559 22 1 7.8682 4.9912 10.2122 23 1 6.9244 7.1084 9.4999 24 6 2.5644 3.0550 7.3592 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.0508 4.2668 1.3158 31 1 2.7890 3.5300 3.3354 32 1 1.2885 1.9549 5.1367 33 1 2.9635 1.3527 5.1256 34 1 2.3314 4.3267 5.5600 35 1 4.7550 2.4446 6.0297 36 1 4.7788 4.2238 5.6557 37 1 7.2844 5.0987 7.1816 38 1 1.7366 3.5923 7.8219 39 1 2.5637 1.9897 7.5901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031806237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:58 Heat of formation + Delta-G solvation = 55.163635 kcal Electronic energy + Delta-G solvation = -21028.646300 eV Core-core repulsion = 17780.286874 eV Total energy + Delta-G solvation = -3248.359427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39851 -40.37137 -39.36760 -35.80718 -35.00819 -34.13376 -31.78987 -31.26100 -30.14314 -27.49071 -26.49544 -24.98761 -24.36971 -23.35235 -21.38927 -20.90923 -20.28569 -19.27263 -18.68717 -17.36156 -16.95017 -16.85670 -16.39221 -15.85750 -15.58714 -15.48952 -15.28321 -14.95748 -14.68259 -14.36534 -13.89616 -13.85791 -13.27085 -13.25055 -13.05837 -12.87238 -12.50741 -12.41036 -12.17053 -12.13059 -11.79578 -11.75875 -11.52217 -11.22568 -10.86740 -10.74307 -10.52548 -10.07342 -9.67651 -8.88498 -7.88831 -5.21238 0.57850 1.12144 1.46892 1.47930 1.57870 1.82653 2.36506 2.49197 2.52506 3.32689 3.43139 3.49190 3.77710 3.80862 4.11372 4.21176 4.28156 4.41703 4.45919 4.50350 4.58256 4.68710 4.72851 4.84136 4.91840 4.97799 5.08013 5.16070 5.20819 5.29591 5.31770 5.47395 5.54011 5.60617 5.70943 5.97209 6.28546 6.51562 6.75903 6.95342 7.40249 7.63250 8.59445 9.28147 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003272 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.750167 B = 8554.896773 C = 9180.249857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C 0.124 3.876 4 N -0.324 5.324 5 N -0.447 5.447 6 H 0.461 0.539 7 C 0.134 3.866 8 C -0.318 4.318 9 C 0.589 3.411 10 O -0.581 6.581 11 N -0.713 5.713 12 C 0.145 3.855 13 C -0.112 4.112 14 C 0.165 3.835 15 N -0.646 5.646 16 C -0.234 4.234 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.976 3.024 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.124 3.876 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.410 0.590 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.010 0.990 36 H 0.047 0.953 37 H 0.248 0.752 38 H 0.062 0.938 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 -1.570 -16.429 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.146 5.146 5 N -0.153 5.153 6 H 0.309 0.691 7 C -0.021 4.021 8 C -0.333 4.333 9 C 0.378 3.622 10 O -0.462 6.462 11 N -0.364 5.364 12 C 0.021 3.979 13 C -0.132 4.132 14 C 0.040 3.960 15 N -0.373 5.373 16 C -0.362 4.362 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.223 1.223 23 H -0.216 1.216 24 C -0.001 4.001 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.244 0.756 31 H 0.246 0.754 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.234 -2.146 -17.334 20.244 hybrid contribution 1.307 1.097 1.415 2.216 sum -8.927 -1.049 -15.919 18.282 Atomic orbital electron populations 1.21547 0.93298 1.02775 1.01229 1.20114 0.97133 0.88000 1.03717 1.22653 0.95202 0.97411 0.89109 1.77092 1.22856 0.92048 1.22640 1.46141 1.50200 1.13072 1.05902 0.69103 1.23745 0.93919 0.98588 0.85812 1.20315 1.22109 0.97272 0.93636 1.17499 0.76289 0.84083 0.84301 1.90707 1.48903 1.21669 1.84895 1.45719 1.67667 1.17526 1.05518 1.21141 1.01158 0.96252 0.79398 1.23385 0.96816 0.98743 0.94245 1.22286 0.92840 0.96569 0.84297 1.46429 1.16039 1.64181 1.10608 1.19469 0.97821 1.27412 0.91520 0.90015 1.25582 0.97708 1.02886 0.99829 1.69992 1.13779 1.51767 1.24556 0.85039 0.78036 0.77506 0.78923 1.19109 1.22272 1.21648 1.22707 0.88334 0.96237 0.92818 0.92551 0.90527 0.93839 0.89609 0.89797 0.75552 0.75351 0.90710 0.93097 0.87499 0.97226 0.93459 0.94326 0.91987 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.89 71.98 0.71 -1.94 16 2 C -0.05 -1.15 5.97 29.85 0.18 -0.98 16 3 C 0.12 3.03 6.52 43.52 0.28 3.32 16 4 N -0.32 -7.22 12.63 -46.67 -0.59 -7.81 16 5 N -0.45 -6.47 7.29 -56.32 -0.41 -6.88 16 6 H 0.46 3.06 8.96 -213.43 -1.91 1.14 16 7 C 0.13 1.98 11.52 84.27 0.97 2.95 16 8 C -0.32 -7.43 6.13 -20.15 -0.12 -7.55 16 9 C 0.59 16.54 7.81 86.66 0.68 17.21 16 10 O -0.58 -20.18 14.92 -4.04 -0.06 -20.24 16 11 N -0.71 -17.67 5.54 -466.38 -2.59 -20.26 16 12 C 0.15 4.17 5.51 86.38 0.48 4.64 16 13 C -0.11 -3.68 3.93 -10.13 -0.04 -3.72 16 14 C 0.17 7.43 7.08 86.44 0.61 8.04 16 15 N -0.65 -32.36 3.70 -716.00 -2.65 -35.01 16 16 C -0.23 -12.98 10.70 84.04 0.90 -12.09 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 19 N -0.95 -56.27 11.39 21.65 0.25 -56.03 16 20 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 C 0.12 4.71 8.51 86.49 0.74 5.45 16 25 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 2.23 6.56 -2.39 -0.02 2.21 16 30 H 0.23 1.34 7.46 -2.91 -0.02 1.32 16 31 H 0.41 7.86 7.40 -92.71 -0.69 7.18 16 32 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 1.67 7.88 -2.39 -0.02 1.65 16 34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.01 0.47 7.92 -2.38 -0.02 0.46 16 36 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 37 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -75.83 329.99 0.31 -75.53 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -1.52 Total: 11.44 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.85 Total: 12.03 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.99 Total: -125.99 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -75.83 0.31 -75.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031806237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.690 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds