Wall clock time and date at job start Mon Mar 30 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.41531 * 2 1 4 4 C 1.33321 * 109.68052 * 180.02562 * 3 2 1 5 5 C 1.36665 * 107.78696 * 359.97438 * 4 3 2 6 6 C 1.46764 * 126.84312 * 180.02562 * 5 4 3 7 7 O 1.21682 * 120.00112 * 185.00531 * 6 5 4 8 8 N 1.34780 * 120.00006 * 4.99630 * 6 5 4 9 9 C 1.46497 * 119.99768 * 185.02645 * 8 6 5 10 10 C 1.53005 * 109.47100 * 180.02562 * 9 8 6 11 11 C 1.53495 * 114.20908 * 175.00024 * 10 9 8 12 12 N 1.47064 * 87.98365 * 87.71387 * 11 10 9 13 13 C 1.36939 * 136.05488 * 207.08300 * 12 11 10 14 14 H 1.08006 * 119.99872 * 354.88772 * 13 12 11 15 15 C 1.38802 * 120.00053 * 174.89317 * 13 12 11 16 16 N 1.31628 * 120.00177 * 184.55348 * 15 13 12 17 17 Si 1.86802 * 120.00059 * 4.55177 * 15 13 12 18 18 H 1.48501 * 109.47269 * 174.36887 * 17 15 13 19 19 H 1.48500 * 109.47134 * 294.36578 * 17 15 13 20 20 H 1.48494 * 109.47080 * 54.36932 * 17 15 13 21 21 C 1.47064 * 87.88747 * 27.34258 * 12 11 10 22 22 N 1.34489 * 125.41790 * 180.31683 * 2 1 3 23 23 C 1.46503 * 126.47491 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47254 * 90.02037 * 1 2 3 25 25 H 1.09000 * 109.47453 * 210.02494 * 1 2 3 26 26 H 1.09003 * 109.47023 * 330.02611 * 1 2 3 27 27 H 1.07994 * 126.10368 * 180.02562 * 4 3 2 28 28 H 0.96998 * 120.00303 * 5.02260 * 8 6 5 29 29 H 1.09003 * 109.47533 * 60.00154 * 9 8 6 30 30 H 1.09002 * 109.47295 * 299.99766 * 9 8 6 31 31 H 1.08997 * 113.27966 * 41.92943 * 10 9 8 32 32 H 1.09000 * 113.46549 * 332.93139 * 11 10 9 33 33 H 1.08996 * 113.51989 * 202.50699 * 11 10 9 34 34 H 0.96997 * 119.99510 * 5.00643 * 16 15 13 35 35 H 1.09004 * 113.46187 * 87.43635 * 21 12 11 36 36 H 1.08998 * 113.46951 * 217.87418 * 21 12 11 37 37 H 1.08995 * 109.46524 * 275.05658 * 23 22 2 38 38 H 1.09000 * 109.46957 * 35.05930 * 23 22 2 39 39 H 1.09004 * 109.46857 * 155.06161 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5975 -0.6608 -0.0004 6 6 4.8028 -1.4982 -0.0003 7 8 4.7035 -2.7075 -0.0920 8 7 6.0197 -0.9278 0.1013 9 6 7.2262 -1.7514 -0.0092 10 6 8.4643 -0.8651 0.1412 11 6 9.7914 -1.6361 0.1637 12 7 9.8106 -1.5428 -1.3038 13 6 10.3393 -2.2772 -2.3316 14 1 10.9733 -3.1253 -2.1190 15 6 10.0603 -1.9316 -3.6467 16 7 10.4938 -2.6888 -4.6323 17 14 9.0697 -0.3920 -4.0179 18 1 9.0265 -0.1731 -5.4860 19 1 7.6872 -0.5564 -3.5011 20 1 9.7077 0.7773 -3.3616 21 6 9.0179 -0.3101 -1.1815 22 7 2.2864 -1.0960 -0.0061 23 6 1.8311 -2.4885 -0.0143 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 4.3977 1.3722 -0.0003 28 1 6.0967 0.0280 0.2474 29 1 7.2449 -2.2398 -0.9835 30 1 7.2234 -2.5072 0.7762 31 1 8.3671 -0.1196 0.9304 32 1 9.6940 -2.6571 0.5326 33 1 10.6034 -1.0903 0.6441 34 1 10.9449 -3.5254 -4.4388 35 1 9.6256 0.5860 -1.0558 36 1 8.2615 -0.2015 -1.9588 37 1 1.6317 -2.8114 1.0074 38 1 0.9188 -2.5689 -0.6054 39 1 2.6041 -3.1209 -0.4510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031925409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:29 Heat of formation + Delta-G solvation = 88.549466 kcal Electronic energy + Delta-G solvation = -21476.168931 eV Core-core repulsion = 18229.257222 eV Total energy + Delta-G solvation = -3246.911709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42710 -39.52924 -38.44013 -34.85539 -33.97484 -32.46015 -32.09807 -29.37413 -27.92403 -27.06894 -25.62171 -25.39545 -22.93032 -21.85141 -20.60545 -20.04109 -19.12351 -17.76367 -17.38789 -16.37489 -16.27751 -15.96213 -15.33187 -14.99675 -14.67806 -14.10076 -13.89869 -13.73613 -13.61887 -13.29424 -13.12794 -13.00919 -12.84699 -12.66224 -12.55040 -11.74050 -11.62725 -11.17051 -10.80886 -10.51146 -10.41698 -10.26382 -9.92720 -9.85147 -9.20103 -9.12257 -8.96161 -8.90412 -8.57601 -7.14939 -6.29579 -3.22474 1.17554 2.29669 2.63453 3.27045 3.34105 3.39328 3.43729 3.65140 4.10081 4.46312 4.58652 4.59780 4.74111 4.77669 4.93027 4.94909 5.08883 5.12325 5.14683 5.24960 5.34895 5.46916 5.49936 5.72543 5.85551 5.97128 6.11024 6.20347 6.25417 6.30996 6.34343 6.36576 6.50852 6.81684 6.83065 7.10903 7.48893 7.73022 8.18459 8.24609 8.98554 9.50985 10.36043 11.22145 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.004200 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.218554 B = 6665.193326 C = 6902.958311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.222 3.778 3 N -0.494 5.494 4 C 0.038 3.962 5 C -0.083 4.083 6 C 0.592 3.408 7 O -0.546 6.546 8 N -0.711 5.711 9 C 0.149 3.851 10 C -0.146 4.146 11 C 0.133 3.867 12 N -0.627 5.627 13 C -0.303 4.303 14 H 0.082 0.918 15 C -0.024 4.024 16 N -0.936 5.936 17 Si 1.073 2.927 18 H -0.296 1.296 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.092 3.908 22 N -0.424 5.424 23 C 0.062 3.938 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.180 0.820 28 H 0.401 0.599 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 5.832 13.160 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 N -0.213 5.213 4 C -0.116 4.116 5 C -0.200 4.200 6 C 0.378 3.622 7 O -0.425 6.425 8 N -0.361 5.361 9 C 0.026 3.974 10 C -0.166 4.166 11 C 0.006 3.994 12 N -0.356 5.356 13 C -0.429 4.429 14 H 0.100 0.900 15 C -0.223 4.223 16 N -0.578 5.578 17 Si 0.906 3.094 18 H -0.224 1.224 19 H -0.220 1.220 20 H -0.217 1.217 21 C -0.033 4.033 22 N -0.105 5.105 23 C -0.080 4.080 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.197 0.803 28 H 0.236 0.764 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.805 6.331 11.623 23.820 hybrid contribution 1.204 -1.248 1.321 2.180 sum -18.601 5.083 12.944 23.224 Atomic orbital electron populations 1.20258 0.84418 1.04300 1.03881 1.23431 0.95914 0.81216 1.03407 1.70099 1.02153 1.28093 1.20987 1.22648 0.95203 0.91264 1.02501 1.20803 0.85375 0.94963 1.18881 1.16726 0.82101 0.86573 0.76768 1.90778 1.86729 1.14079 1.50950 1.45684 1.05161 1.12225 1.73051 1.21106 0.80420 0.92391 1.03440 1.23160 0.95097 0.99167 0.99193 1.22272 0.92377 0.97954 0.86837 1.46159 1.64338 1.23940 1.01191 1.20162 1.28067 1.09627 0.85031 0.90014 1.25670 1.00852 1.05234 0.90527 1.70915 1.41267 1.13775 1.31841 0.83688 0.75459 0.75474 0.74779 1.22351 1.21989 1.21690 1.22951 0.94383 0.91356 0.94599 1.45072 1.05157 1.08360 1.51876 1.22345 1.02728 0.79015 1.03911 0.89755 0.90587 0.88773 0.80303 0.76432 0.89702 0.91161 0.90063 0.93314 0.93989 0.92925 0.93774 0.92526 0.90248 0.89585 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.01 36.01 0.36 -0.09 16 2 C 0.22 2.48 7.88 -155.61 -1.23 1.25 16 3 N -0.49 -6.49 11.20 -10.58 -0.12 -6.61 16 4 C 0.04 0.48 11.36 -17.47 -0.20 0.28 16 5 C -0.08 -1.14 6.91 -82.14 -0.57 -1.71 16 6 C 0.59 9.17 7.78 -12.81 -0.10 9.07 16 7 O -0.55 -10.03 14.77 5.21 0.08 -9.96 16 8 N -0.71 -9.96 5.53 -61.59 -0.34 -10.30 16 9 C 0.15 2.45 5.52 -4.04 -0.02 2.43 16 10 C -0.15 -2.33 4.17 -89.97 -0.37 -2.70 16 11 C 0.13 2.48 8.25 -8.51 -0.07 2.41 16 12 N -0.63 -15.16 3.53 -184.61 -0.65 -15.81 16 13 C -0.30 -8.75 11.09 -15.06 -0.17 -8.92 16 14 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 15 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 16 N -0.94 -29.95 13.70 55.49 0.76 -29.19 16 17 Si 1.07 27.22 25.12 -169.99 -4.27 22.95 16 18 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 19 H -0.29 -7.00 6.28 56.52 0.36 -6.65 16 20 H -0.29 -6.83 6.71 56.52 0.38 -6.45 16 21 C 0.09 1.87 5.45 -8.37 -0.05 1.82 16 22 N -0.42 -5.07 3.17 -117.27 -0.37 -5.45 16 23 C 0.06 0.57 10.37 59.85 0.62 1.19 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.33 7.80 -51.93 -0.41 -0.07 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.18 1.71 7.50 -52.49 -0.39 1.31 16 28 H 0.40 4.37 7.46 -40.82 -0.30 4.07 16 29 H 0.08 1.75 7.93 -51.93 -0.41 1.34 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 35 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.06 1.22 4.00 -51.93 -0.21 1.01 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.53 7.89 -51.93 -0.41 0.12 16 39 H 0.11 1.30 6.15 -51.93 -0.32 0.98 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -36.74 322.00 -7.42 -44.16 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.47 Total: 1.14 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.89 Total: 4.20 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.72 Total: -67.35 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -4.27 Total: 22.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.74 -7.42 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031925409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.714 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds