Wall clock time and date at job start Mon Mar 30 2020 23:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.41531 * 2 1 4 4 C 1.33321 * 109.68052 * 180.02562 * 3 2 1 5 5 C 1.36665 * 107.78696 * 359.97438 * 4 3 2 6 6 C 1.46764 * 126.84312 * 180.02562 * 5 4 3 7 7 O 1.21682 * 120.00112 * 185.00531 * 6 5 4 8 8 N 1.34780 * 120.00006 * 4.99630 * 6 5 4 9 9 C 1.46497 * 119.99768 * 185.02645 * 8 6 5 10 10 C 1.53005 * 109.47100 * 180.02562 * 9 8 6 11 11 C 1.53495 * 114.20908 * 175.00024 * 10 9 8 12 12 N 1.47064 * 87.98365 * 87.71387 * 11 10 9 13 13 C 1.36939 * 136.05488 * 207.08300 * 12 11 10 14 14 H 1.08006 * 119.99872 * 354.88772 * 13 12 11 15 15 C 1.38802 * 120.00053 * 174.89317 * 13 12 11 16 16 N 1.31628 * 120.00177 * 184.55348 * 15 13 12 17 17 Si 1.86802 * 120.00059 * 4.55177 * 15 13 12 18 18 H 1.48501 * 109.47269 * 174.36887 * 17 15 13 19 19 H 1.48500 * 109.47134 * 294.36578 * 17 15 13 20 20 H 1.48494 * 109.47080 * 54.36932 * 17 15 13 21 21 C 1.47064 * 87.88747 * 27.34258 * 12 11 10 22 22 N 1.34489 * 125.41790 * 180.31683 * 2 1 3 23 23 C 1.46503 * 126.47491 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47254 * 90.02037 * 1 2 3 25 25 H 1.09000 * 109.47453 * 210.02494 * 1 2 3 26 26 H 1.09003 * 109.47023 * 330.02611 * 1 2 3 27 27 H 1.07994 * 126.10368 * 180.02562 * 4 3 2 28 28 H 0.96998 * 120.00303 * 5.02260 * 8 6 5 29 29 H 1.09003 * 109.47533 * 60.00154 * 9 8 6 30 30 H 1.09002 * 109.47295 * 299.99766 * 9 8 6 31 31 H 1.08997 * 113.27966 * 41.92943 * 10 9 8 32 32 H 1.09000 * 113.46549 * 332.93139 * 11 10 9 33 33 H 1.08996 * 113.51989 * 202.50699 * 11 10 9 34 34 H 0.96997 * 119.99510 * 5.00643 * 16 15 13 35 35 H 1.09004 * 113.46187 * 87.43635 * 21 12 11 36 36 H 1.08998 * 113.46951 * 217.87418 * 21 12 11 37 37 H 1.08995 * 109.46524 * 275.05658 * 23 22 2 38 38 H 1.09000 * 109.46957 * 35.05930 * 23 22 2 39 39 H 1.09004 * 109.46857 * 155.06161 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5975 -0.6608 -0.0004 6 6 4.8028 -1.4982 -0.0003 7 8 4.7035 -2.7075 -0.0920 8 7 6.0197 -0.9278 0.1013 9 6 7.2262 -1.7514 -0.0092 10 6 8.4643 -0.8651 0.1412 11 6 9.7914 -1.6361 0.1637 12 7 9.8106 -1.5428 -1.3038 13 6 10.3393 -2.2772 -2.3316 14 1 10.9733 -3.1253 -2.1190 15 6 10.0603 -1.9316 -3.6467 16 7 10.4938 -2.6888 -4.6323 17 14 9.0697 -0.3920 -4.0179 18 1 9.0265 -0.1731 -5.4860 19 1 7.6872 -0.5564 -3.5011 20 1 9.7077 0.7773 -3.3616 21 6 9.0179 -0.3101 -1.1815 22 7 2.2864 -1.0960 -0.0061 23 6 1.8311 -2.4885 -0.0143 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 4.3977 1.3722 -0.0003 28 1 6.0967 0.0280 0.2474 29 1 7.2449 -2.2398 -0.9835 30 1 7.2234 -2.5072 0.7762 31 1 8.3671 -0.1196 0.9304 32 1 9.6940 -2.6571 0.5326 33 1 10.6034 -1.0903 0.6441 34 1 10.9449 -3.5254 -4.4388 35 1 9.6256 0.5860 -1.0558 36 1 8.2615 -0.2015 -1.9588 37 1 1.6317 -2.8114 1.0074 38 1 0.9188 -2.5689 -0.6054 39 1 2.6041 -3.1209 -0.4510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031925409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:28 Heat of formation + Delta-G solvation = 60.398740 kcal Electronic energy + Delta-G solvation = -21477.389638 eV Core-core repulsion = 18229.257222 eV Total energy + Delta-G solvation = -3248.132416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.30789 -40.87348 -39.86839 -36.04804 -34.99537 -34.50820 -32.93312 -30.88392 -29.06956 -27.96855 -26.97827 -26.92904 -24.12862 -23.48864 -21.65077 -21.12076 -20.53785 -19.50486 -18.70937 -17.42819 -17.28306 -17.14049 -16.94762 -16.33686 -15.93416 -15.74365 -15.16398 -15.02855 -14.84182 -14.26570 -14.20760 -14.09782 -13.71866 -13.40910 -13.29653 -13.21875 -13.14899 -13.03838 -12.38157 -12.21812 -11.91909 -11.51409 -11.27001 -11.07175 -10.97200 -10.84122 -10.76794 -10.23996 -9.49932 -9.17506 -8.63828 -5.46140 0.21602 1.34290 1.41991 1.45796 1.64963 1.72172 2.20983 2.28297 2.53096 3.06461 3.18741 3.37950 3.46005 3.66522 3.81245 3.87250 3.94224 4.29320 4.35939 4.41622 4.45120 4.58186 4.65965 4.68524 4.71642 4.72362 4.74792 4.85076 4.94132 5.04326 5.14827 5.18926 5.26969 5.44181 5.47417 5.95977 6.04845 6.41120 6.71011 6.84773 7.08173 7.34058 8.28516 8.90856 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.004200 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.218554 B = 6665.193326 C = 6902.958311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.230 3.770 3 N -0.525 5.525 4 C 0.047 3.953 5 C -0.116 4.116 6 C 0.590 3.410 7 O -0.585 6.585 8 N -0.698 5.698 9 C 0.156 3.844 10 C -0.110 4.110 11 C 0.127 3.873 12 N -0.665 5.665 13 C -0.285 4.285 14 H 0.047 0.953 15 C -0.090 4.090 16 N -0.977 5.977 17 Si 1.113 2.887 18 H -0.310 1.310 19 H -0.276 1.276 20 H -0.256 1.256 21 C 0.083 3.917 22 N -0.432 5.432 23 C 0.060 3.940 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.204 0.796 28 H 0.419 0.581 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 8.563 15.471 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 N -0.244 5.244 4 C -0.108 4.108 5 C -0.232 4.232 6 C 0.378 3.622 7 O -0.467 6.467 8 N -0.350 5.350 9 C 0.033 3.967 10 C -0.129 4.129 11 C 0.001 3.999 12 N -0.394 5.394 13 C -0.413 4.413 14 H 0.065 0.935 15 C -0.281 4.281 16 N -0.623 5.623 17 Si 0.940 3.060 18 H -0.239 1.239 19 H -0.203 1.203 20 H -0.181 1.181 21 C -0.041 4.041 22 N -0.112 5.112 23 C -0.081 4.081 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.221 0.779 28 H 0.257 0.743 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.064 9.100 14.020 27.680 hybrid contribution 1.863 -2.159 0.726 2.943 sum -20.201 6.941 14.747 25.956 Atomic orbital electron populations 1.20508 0.81175 1.05941 1.05257 1.24330 0.97598 0.80495 1.00777 1.70161 1.02564 1.29110 1.22583 1.23112 0.95975 0.91078 1.00667 1.20651 0.85544 0.95229 1.21765 1.17041 0.82965 0.86293 0.75904 1.90761 1.87332 1.15832 1.52798 1.45463 1.04037 1.12901 1.72587 1.20830 0.81933 0.93028 1.00939 1.22934 0.92827 0.98822 0.98360 1.22582 0.94805 0.98894 0.83573 1.46269 1.64593 1.25818 1.02761 1.20023 1.25744 1.08728 0.86780 0.93506 1.27014 1.02332 1.07850 0.90857 1.71017 1.44097 1.14159 1.33020 0.83224 0.75256 0.73433 0.74059 1.23862 1.20324 1.18056 1.23230 0.93863 0.90613 0.96378 1.45319 1.04772 1.09437 1.51710 1.22466 1.02923 0.77454 1.05278 0.88333 0.88173 0.87933 0.77897 0.74320 0.94572 0.90705 0.84301 0.93604 0.91254 0.94631 0.91353 0.93721 0.88729 0.86328 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.01 71.24 0.71 0.05 16 2 C 0.23 4.54 7.88 138.20 1.09 5.63 16 3 N -0.52 -12.53 11.20 -187.39 -2.10 -14.63 16 4 C 0.05 1.06 11.36 84.10 0.96 2.01 16 5 C -0.12 -3.00 6.91 40.01 0.28 -2.72 16 6 C 0.59 17.81 7.78 86.47 0.67 18.48 16 7 O -0.59 -21.83 14.77 -4.29 -0.06 -21.89 16 8 N -0.70 -18.04 5.53 -466.99 -2.58 -20.62 16 9 C 0.16 4.89 5.52 86.38 0.48 5.36 16 10 C -0.11 -3.07 4.17 -10.37 -0.04 -3.11 16 11 C 0.13 4.41 8.25 83.18 0.69 5.09 16 12 N -0.66 -31.42 3.53 -737.97 -2.61 -34.03 16 13 C -0.28 -16.90 11.09 84.03 0.93 -15.97 16 14 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 15 C -0.09 -5.52 5.50 84.86 0.47 -5.05 16 16 N -0.98 -65.33 13.70 21.65 0.30 -65.03 16 17 Si 1.11 55.09 25.12 68.60 1.72 56.81 16 18 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 19 H -0.28 -12.75 6.28 99.48 0.63 -12.13 16 20 H -0.26 -11.08 6.71 99.48 0.67 -10.42 16 21 C 0.08 3.08 5.45 83.27 0.45 3.54 16 22 N -0.43 -9.58 3.17 -524.93 -1.67 -11.24 16 23 C 0.06 1.01 10.37 127.77 1.32 2.33 16 24 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 0.47 7.80 -2.39 -0.02 0.45 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.20 3.21 7.50 -2.91 -0.02 3.19 16 28 H 0.42 7.59 7.46 -92.71 -0.69 6.90 16 29 H 0.04 1.50 7.93 -2.39 -0.02 1.48 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.24 16.44 8.73 -92.71 -0.81 15.63 16 35 H 0.07 2.28 8.08 -2.38 -0.02 2.26 16 36 H 0.04 1.78 4.00 -2.39 -0.01 1.78 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.14 7.89 -2.39 -0.02 1.12 16 39 H 0.08 1.93 6.15 -2.38 -0.01 1.92 16 Total: -1.00 -85.12 322.00 1.22 -83.90 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.22 Total: 11.10 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 8.00 Total: 15.65 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -8.66 Total: -145.56 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 55.09 SS G_CDS: 1.72 Total: 56.81 kcal Total: -85.12 1.22 -83.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031925409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.299 kcal (2) G-P(sol) polarization free energy of solvation -85.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds