Wall clock time and date at job start Tue Mar 31 2020 00:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46707 * 2 1 4 4 N 1.33317 * 126.10859 * 269.99712 * 3 2 1 5 5 C 1.30850 * 109.68539 * 180.02562 * 4 3 2 6 6 N 1.34497 * 109.16642 * 359.76706 * 5 4 3 7 7 H 0.96996 * 126.47782 * 180.25280 * 6 5 4 8 8 C 1.36669 * 126.10574 * 90.00008 * 3 2 1 9 9 C 1.46765 * 126.84473 * 359.96113 * 8 3 2 10 10 O 1.21683 * 120.00131 * 0.02562 * 9 8 3 11 11 N 1.34778 * 119.99935 * 179.97438 * 9 8 3 12 12 C 1.46494 * 119.99683 * 180.27214 * 11 9 8 13 13 C 1.53008 * 109.46915 * 179.72886 * 12 11 9 14 14 C 1.53947 * 113.74029 * 273.74211 * 13 12 11 15 15 N 1.47808 * 86.03331 * 222.08338 * 14 13 12 16 16 C 1.36948 * 134.45067 * 204.64362 * 15 14 13 17 17 H 1.07999 * 119.99315 * 173.35065 * 16 15 14 18 18 C 1.38810 * 120.00158 * 353.35330 * 16 15 14 19 19 N 1.31614 * 120.00257 * 5.06287 * 18 16 15 20 20 Si 1.86796 * 119.99558 * 185.06355 * 18 16 15 21 21 H 1.48503 * 109.47471 * 94.98980 * 20 18 16 22 22 H 1.48505 * 109.46728 * 214.98528 * 20 18 16 23 23 H 1.48498 * 109.47404 * 334.98290 * 20 18 16 24 24 C 1.47575 * 91.05524 * 24.55489 * 15 14 13 25 25 H 1.08996 * 109.47293 * 60.00307 * 1 2 3 26 26 H 1.09004 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47466 * 299.99700 * 1 2 3 28 28 H 1.09000 * 109.46814 * 239.99968 * 2 1 3 29 29 H 1.09001 * 109.47010 * 120.00074 * 2 1 3 30 30 H 1.08006 * 125.41807 * 180.02562 * 5 4 3 31 31 H 0.96998 * 119.99782 * 0.02562 * 11 9 8 32 32 H 1.08995 * 109.47476 * 299.72894 * 12 11 9 33 33 H 1.09008 * 109.47265 * 59.73411 * 12 11 9 34 34 H 1.09002 * 112.94017 * 45.33394 * 13 12 11 35 35 H 1.08999 * 113.76922 * 336.35409 * 14 13 12 36 36 H 1.09008 * 113.76692 * 107.74610 * 14 13 12 37 37 H 0.96995 * 120.00299 * 180.02562 * 19 18 16 38 38 H 1.09000 * 113.76747 * 221.15317 * 24 15 14 39 39 H 1.08992 * 113.76891 * 89.75010 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2941 2.1616 -1.0771 5 6 2.7129 3.3448 -0.7071 6 7 2.7298 3.4071 0.6363 7 1 2.9946 4.1690 1.1750 8 6 2.3006 2.1802 1.1042 9 6 2.1565 1.7747 2.5073 10 8 1.7610 0.6568 2.7801 11 7 2.4631 2.6404 3.4938 12 6 2.3249 2.2336 4.8944 13 6 2.7408 3.3908 5.8049 14 6 4.2521 3.4399 6.0937 15 7 3.8715 3.7498 7.4879 16 6 4.4868 4.3902 8.5303 17 1 3.9420 4.5834 9.4426 18 6 5.8107 4.7912 8.4143 19 7 6.4444 4.6462 7.2699 20 14 6.6928 5.5366 9.8825 21 1 7.4469 4.4760 10.5978 22 1 7.6356 6.5839 9.4140 23 1 5.6973 6.1427 10.8027 24 6 2.5620 3.0942 7.3050 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9957 4.1456 -1.3744 31 1 2.7787 3.5314 3.2764 32 1 1.2869 1.9684 5.0950 33 1 2.9639 1.3718 5.0872 34 1 2.3220 4.3479 5.4938 35 1 4.7529 2.4787 5.9782 36 1 4.7700 4.2544 5.5870 37 1 7.3695 4.9261 7.1889 38 1 1.7330 3.6331 7.7636 39 1 2.5654 2.0313 7.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032158179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:34 Heat of formation + Delta-G solvation = 41.821480 kcal Electronic energy + Delta-G solvation = -21096.619326 eV Core-core repulsion = 17847.681340 eV Total energy + Delta-G solvation = -3248.937986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.21224 -40.58477 -39.52054 -36.06672 -34.99809 -34.18426 -33.02775 -30.90419 -29.84998 -27.63962 -26.56919 -25.08495 -23.99013 -23.43959 -22.04716 -21.23794 -20.35561 -19.52983 -18.74152 -17.24389 -17.13857 -17.01226 -16.66700 -15.98338 -15.71073 -15.55135 -15.42602 -14.85587 -14.77281 -14.49404 -14.29629 -13.99335 -13.33525 -13.28181 -13.12468 -12.90482 -12.56638 -12.38372 -12.24389 -11.98932 -11.83531 -11.61094 -11.48058 -11.28630 -11.01363 -10.89291 -10.84449 -10.20424 -9.49794 -8.92443 -7.94670 -5.26335 0.27666 1.44279 1.46306 1.54714 1.87131 1.91423 2.16820 2.26847 2.45785 3.26384 3.38226 3.52465 3.69421 3.81523 4.01047 4.13343 4.23183 4.32601 4.51279 4.56055 4.59780 4.70234 4.77288 4.78439 4.85890 4.86991 5.07352 5.10378 5.23262 5.24743 5.30840 5.36833 5.52169 5.55365 5.61896 5.91574 6.33154 6.45144 6.90380 6.93975 7.08841 7.58654 8.54718 9.22981 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032239 B = 0.003281 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.309293 B = 8532.409934 C = 9118.695808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.084 3.916 4 N -0.533 5.533 5 C 0.239 3.761 6 N -0.543 5.543 7 H 0.439 0.561 8 C -0.108 4.108 9 C 0.591 3.409 10 O -0.558 6.558 11 N -0.713 5.713 12 C 0.143 3.857 13 C -0.114 4.114 14 C 0.168 3.832 15 N -0.645 5.645 16 C -0.237 4.237 17 H 0.084 0.916 18 C -0.066 4.066 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.266 1.266 24 C 0.125 3.875 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.262 0.738 31 H 0.407 0.593 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.011 0.989 36 H 0.042 0.958 37 H 0.248 0.752 38 H 0.063 0.937 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -1.249 -15.790 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.051 4.051 4 N -0.253 5.253 5 C -0.045 4.045 6 N -0.148 5.148 7 H 0.281 0.719 8 C -0.225 4.225 9 C 0.378 3.622 10 O -0.436 6.436 11 N -0.364 5.364 12 C 0.019 3.981 13 C -0.134 4.134 14 C 0.043 3.957 15 N -0.372 5.372 16 C -0.365 4.365 17 H 0.101 0.899 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.804 3.196 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.191 1.191 24 C 0.000 4.000 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.278 0.722 31 H 0.242 0.758 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.029 0.971 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.384 -2.139 -16.151 19.320 hybrid contribution 1.437 1.353 1.876 2.723 sum -8.947 -0.786 -14.275 16.865 Atomic orbital electron populations 1.21538 0.93665 1.02451 1.01017 1.20045 0.96865 0.88852 1.03147 1.21236 0.99091 0.97455 0.87269 1.70128 1.20337 1.04221 1.30620 1.26086 0.98363 0.97745 0.82323 1.43315 1.49706 1.12641 1.09178 0.71922 1.20734 1.17732 0.89815 0.94186 1.17035 0.77271 0.84540 0.83305 1.90794 1.48282 1.21067 1.83501 1.45790 1.67431 1.17018 1.06112 1.21241 1.01650 0.96571 0.78631 1.23425 0.96898 0.98561 0.94507 1.22218 0.92621 0.96457 0.84427 1.46387 1.16628 1.63347 1.10843 1.19441 0.94222 1.28755 0.94087 0.89859 1.25622 0.97278 1.03062 0.99911 1.69988 1.10969 1.54076 1.24951 0.85107 0.78363 0.77285 0.78889 1.21794 1.21970 1.19068 1.22702 0.88478 0.96286 0.92524 0.92643 0.90838 0.94093 0.90037 0.90399 0.72197 0.75754 0.90160 0.92614 0.87532 0.97111 0.93979 0.94261 0.91861 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.89 71.98 0.71 -2.05 16 2 C -0.05 -1.23 5.93 29.85 0.18 -1.05 16 3 C 0.08 2.13 6.40 41.97 0.27 2.40 16 4 N -0.53 -12.07 11.20 -187.58 -2.10 -14.17 16 5 C 0.24 3.40 13.01 180.33 2.35 5.75 16 6 N -0.54 -8.16 6.07 -188.04 -1.14 -9.31 16 7 H 0.44 3.78 8.32 -92.71 -0.77 3.01 16 8 C -0.11 -2.57 7.08 40.01 0.28 -2.29 16 9 C 0.59 16.33 7.79 86.47 0.67 17.00 16 10 O -0.56 -18.83 14.82 -4.29 -0.06 -18.89 16 11 N -0.71 -17.36 5.55 -466.99 -2.59 -19.95 16 12 C 0.14 4.00 5.51 86.38 0.48 4.47 16 13 C -0.11 -3.67 3.93 -10.13 -0.04 -3.71 16 14 C 0.17 7.49 6.99 86.44 0.60 8.10 16 15 N -0.65 -32.07 3.70 -716.22 -2.65 -34.72 16 16 C -0.24 -13.07 10.70 84.03 0.90 -12.17 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 19 N -0.95 -56.22 11.51 21.65 0.25 -55.97 16 20 Si 0.98 45.02 29.56 68.60 2.03 47.05 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.13 4.68 8.51 86.49 0.74 5.41 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.13 6.48 -2.39 -0.02 2.11 16 30 H 0.26 0.86 8.06 -2.91 -0.02 0.83 16 31 H 0.41 7.86 7.72 -92.71 -0.72 7.14 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.77 7.88 -2.38 -0.02 1.76 16 34 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.01 0.53 7.92 -2.39 -0.02 0.51 16 36 H 0.04 2.06 7.37 -2.38 -0.02 2.05 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -75.20 329.94 0.92 -74.28 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.41 Total: 13.03 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.60 Total: 18.65 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -8.24 Total: -134.11 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.20 0.92 -74.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032158179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.097 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds