Wall clock time and date at job start Mon Mar 30 2020 23:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30853 * 125.42449 * 2 1 4 4 C 1.33319 * 109.68699 * 179.78458 * 3 2 1 5 5 C 1.36657 * 107.78631 * 0.38482 * 4 3 2 6 6 C 1.46765 * 126.84662 * 179.89606 * 5 4 3 7 7 O 1.21686 * 119.99624 * 10.00720 * 6 5 4 8 8 N 1.34774 * 120.00107 * 190.01512 * 6 5 4 9 9 C 1.46496 * 120.00026 * 359.01062 * 8 6 5 10 10 C 1.46499 * 120.00045 * 179.02082 * 8 6 5 11 11 H 1.09003 * 110.78043 * 1.77821 * 10 8 6 12 12 C 1.55156 * 110.72548 * 125.01582 * 10 8 6 13 13 C 1.55134 * 101.48039 * 82.69433 * 12 10 8 14 14 N 1.47428 * 104.72354 * 37.30166 * 13 12 10 15 15 C 1.36931 * 125.64783 * 155.81893 * 14 13 12 16 16 H 1.08008 * 119.99817 * 188.12717 * 15 14 13 17 17 C 1.38815 * 120.00337 * 8.12436 * 15 14 13 18 18 N 1.31613 * 119.99843 * 34.54391 * 17 15 14 19 19 Si 1.86797 * 119.99937 * 214.54234 * 17 15 14 20 20 H 1.48499 * 109.46978 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 299.99889 * 19 17 15 22 22 H 1.48500 * 109.47286 * 59.99902 * 19 17 15 23 23 C 1.47022 * 108.69827 * 335.54760 * 14 13 12 24 24 N 1.34501 * 125.41558 * 180.02562 * 2 1 3 25 25 H 0.97003 * 126.47084 * 359.95648 * 24 2 1 26 26 H 1.09001 * 109.46954 * 269.97710 * 1 2 3 27 27 H 1.09000 * 109.46814 * 29.96844 * 1 2 3 28 28 H 1.08992 * 109.47741 * 149.97297 * 1 2 3 29 29 H 1.08002 * 126.10820 * 180.27401 * 4 3 2 30 30 H 1.08997 * 109.47245 * 276.06052 * 9 8 6 31 31 H 1.09000 * 109.46990 * 36.06643 * 9 8 6 32 32 H 1.09005 * 109.46728 * 156.05766 * 9 8 6 33 33 H 1.08998 * 111.00794 * 200.93043 * 12 10 8 34 34 H 1.09002 * 111.00243 * 324.75552 * 12 10 8 35 35 H 1.08995 * 110.50184 * 278.45220 * 13 12 10 36 36 H 1.09002 * 110.33971 * 156.06231 * 13 12 10 37 37 H 0.97004 * 119.99967 * 357.16686 * 18 17 15 38 38 H 1.09008 * 109.87914 * 120.71114 * 23 14 13 39 39 H 1.09001 * 109.88148 * 241.86708 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7047 0.0047 5 6 3.5975 -0.6610 -0.0009 6 6 4.8027 -1.4985 -0.0007 7 8 5.8940 -0.9942 0.1879 8 7 4.7008 -2.8261 -0.2096 9 6 3.3850 -3.4363 -0.4153 10 6 5.9059 -3.6589 -0.2308 11 1 6.7940 -3.0592 -0.0314 12 6 5.7880 -4.8213 0.7901 13 6 4.9684 -5.8608 -0.0188 14 7 5.4699 -5.7406 -1.4000 15 6 5.4120 -6.7173 -2.3579 16 1 5.9229 -6.5811 -3.2997 17 6 4.6968 -7.8827 -2.1186 18 7 3.5942 -7.8425 -1.4011 19 14 5.2993 -9.5080 -2.8149 20 1 4.3656 -10.5927 -2.4189 21 1 5.3576 -9.4207 -4.2962 22 1 6.6540 -9.8028 -2.2827 23 6 6.0365 -4.3960 -1.5803 24 7 2.2864 -1.0961 -0.0005 25 1 1.9848 -2.0181 -0.0003 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8896 -0.5142 29 1 4.3979 1.3719 0.0100 30 1 2.9249 -3.6421 0.5511 31 1 2.7519 -2.7528 -0.9810 32 1 3.4993 -4.3682 -0.9692 33 1 6.7711 -5.2123 1.0522 34 1 5.2452 -4.5053 1.6810 35 1 3.9054 -5.6233 0.0209 36 1 5.1480 -6.8655 0.3638 37 1 3.3034 -7.0061 -1.0051 38 1 7.0870 -4.4711 -1.8616 39 1 5.4818 -3.8602 -2.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032959356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:20 Heat of formation + Delta-G solvation = 76.925389 kcal Electronic energy + Delta-G solvation = -22230.012636 eV Core-core repulsion = 18982.596870 eV Total energy + Delta-G solvation = -3247.415766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45231 -39.83242 -37.67913 -34.99013 -33.11109 -32.30422 -31.75241 -29.33362 -28.46312 -27.76205 -26.31466 -24.37154 -22.99717 -21.55354 -20.37858 -20.31832 -19.51792 -17.84371 -17.52647 -16.67021 -16.00181 -15.95911 -14.97439 -14.59960 -14.40099 -14.09319 -13.76672 -13.54643 -13.35050 -13.12310 -12.88191 -12.86531 -12.69091 -12.33815 -12.14590 -11.87705 -11.19184 -10.93267 -10.76933 -10.54841 -10.39935 -10.33319 -10.23739 -10.06495 -9.83424 -9.76183 -8.77243 -8.45878 -8.37173 -7.08646 -6.33226 -3.17714 1.21916 2.66572 2.68969 3.03456 3.31900 3.43327 3.49203 3.65761 4.15348 4.44662 4.48207 4.77181 4.89976 5.06426 5.09998 5.13405 5.18840 5.19399 5.32712 5.38347 5.47714 5.57983 5.59821 5.68986 5.79751 5.90524 5.98791 6.23379 6.26286 6.43210 6.49534 6.73153 6.81343 6.85044 7.02430 7.36150 7.66353 7.77524 8.11146 8.37973 8.86430 9.71213 10.24661 11.07768 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.004503 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.266469 B = 6216.555107 C = 6881.712586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.228 3.772 3 N -0.498 5.498 4 C 0.066 3.934 5 C -0.082 4.082 6 C 0.593 3.407 7 O -0.532 6.532 8 N -0.592 5.592 9 C 0.048 3.952 10 C 0.127 3.873 11 H 0.108 0.892 12 C -0.145 4.145 13 C 0.134 3.866 14 N -0.602 5.602 15 C -0.349 4.349 16 H 0.070 0.930 17 C -0.022 4.022 18 N -0.911 5.911 19 Si 1.065 2.935 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.128 3.872 24 N -0.556 5.556 25 H 0.428 0.572 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.183 0.817 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.039 0.961 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 11.444 4.622 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 N -0.218 5.218 4 C -0.087 4.087 5 C -0.198 4.198 6 C 0.381 3.619 7 O -0.409 6.409 8 N -0.323 5.323 9 C -0.096 4.096 10 C 0.024 3.976 11 H 0.126 0.874 12 C -0.185 4.185 13 C 0.009 3.991 14 N -0.330 5.330 15 C -0.476 4.476 16 H 0.087 0.913 17 C -0.224 4.224 18 N -0.552 5.552 19 Si 0.895 3.105 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.001 3.999 24 N -0.169 5.169 25 H 0.275 0.725 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.200 0.800 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.236 10.763 4.486 12.782 hybrid contribution 0.447 0.314 0.030 0.547 sum -4.789 11.077 4.515 12.885 Atomic orbital electron populations 1.20299 0.84328 1.04580 1.04014 1.23514 0.95990 0.82013 1.02096 1.70164 1.02078 1.28436 1.21110 1.22621 0.94746 0.91121 1.00254 1.21169 0.83802 0.95899 1.18891 1.16949 0.86915 0.81162 0.76888 1.90815 1.26677 1.72823 1.50622 1.47675 1.08062 1.06409 1.70196 1.22505 0.84038 1.01680 1.01353 1.22201 0.86981 0.91415 0.97044 0.87385 1.23213 1.01821 0.96263 0.97176 1.21819 0.95072 0.97173 0.85070 1.44631 1.70564 1.09962 1.07884 1.19702 1.33391 0.96431 0.98035 0.91255 1.25685 0.93712 1.01309 1.01667 1.70908 1.16285 1.31149 1.36847 0.83477 0.75765 0.75920 0.75343 1.21160 1.21991 1.22126 1.21644 0.97741 0.86845 0.93626 1.44428 1.06155 1.10908 1.55361 0.72481 0.89631 0.88697 0.90352 0.79974 0.92415 0.91952 0.86454 0.90151 0.91517 0.95272 0.92732 0.92275 0.94268 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 36.00 0.38 -0.12 16 2 C 0.23 2.56 8.12 -155.61 -1.26 1.30 16 3 N -0.50 -6.84 11.20 -10.58 -0.12 -6.96 16 4 C 0.07 0.94 11.67 -17.48 -0.20 0.74 16 5 C -0.08 -1.17 6.65 -82.15 -0.55 -1.72 16 6 C 0.59 9.75 7.65 -12.82 -0.10 9.65 16 7 O -0.53 -10.06 16.29 5.20 0.08 -9.97 16 8 N -0.59 -9.47 2.82 -173.35 -0.49 -9.96 16 9 C 0.05 0.68 7.17 59.84 0.43 1.10 16 10 C 0.13 2.21 3.58 -66.10 -0.24 1.97 16 11 H 0.11 1.88 7.00 -51.93 -0.36 1.52 16 12 C -0.15 -2.51 6.54 -24.46 -0.16 -2.67 16 13 C 0.13 2.84 4.33 -2.41 -0.01 2.83 16 14 N -0.60 -14.29 2.94 -169.92 -0.50 -14.79 16 15 C -0.35 -9.42 10.00 -15.06 -0.15 -9.58 16 16 H 0.07 1.90 8.02 -52.48 -0.42 1.48 16 17 C -0.02 -0.59 4.95 -17.43 -0.09 -0.68 16 18 N -0.91 -25.83 12.99 55.49 0.72 -25.11 16 19 Si 1.07 24.56 30.03 -169.99 -5.11 19.45 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.13 2.61 6.30 -3.07 -0.02 2.59 16 24 N -0.56 -6.43 5.12 -7.02 -0.04 -6.47 16 25 H 0.43 4.13 5.12 -40.82 -0.21 3.92 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.18 2.33 8.06 -52.49 -0.42 1.90 16 30 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 31 H 0.06 0.77 5.10 -51.93 -0.26 0.50 16 32 H 0.12 2.09 4.73 -51.93 -0.25 1.84 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.62 4.37 -51.93 -0.23 0.40 16 36 H 0.05 1.30 7.63 -51.93 -0.40 0.91 16 37 H 0.27 7.33 5.89 -40.82 -0.24 7.09 16 38 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -32.47 310.79 -7.67 -40.15 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.94 Total: 3.55 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.97 Total: 5.42 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.42 Total: -63.29 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.11 Total: 19.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.47 -7.67 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032959356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.072 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds