Wall clock time and date at job start Mon Mar 30 2020 23:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30853 * 125.42449 * 2 1 4 4 C 1.33319 * 109.68699 * 179.78458 * 3 2 1 5 5 C 1.36657 * 107.78631 * 0.38482 * 4 3 2 6 6 C 1.46765 * 126.84662 * 179.89606 * 5 4 3 7 7 O 1.21686 * 119.99624 * 10.00720 * 6 5 4 8 8 N 1.34774 * 120.00107 * 190.01512 * 6 5 4 9 9 C 1.46496 * 120.00026 * 359.01062 * 8 6 5 10 10 C 1.46499 * 120.00045 * 179.02082 * 8 6 5 11 11 H 1.09003 * 110.78043 * 1.77821 * 10 8 6 12 12 C 1.55156 * 110.72548 * 125.01582 * 10 8 6 13 13 C 1.55134 * 101.48039 * 82.69433 * 12 10 8 14 14 N 1.47428 * 104.72354 * 37.30166 * 13 12 10 15 15 C 1.36931 * 125.64783 * 155.81893 * 14 13 12 16 16 H 1.08008 * 119.99817 * 188.12717 * 15 14 13 17 17 C 1.38815 * 120.00337 * 8.12436 * 15 14 13 18 18 N 1.31613 * 119.99843 * 34.54391 * 17 15 14 19 19 Si 1.86797 * 119.99937 * 214.54234 * 17 15 14 20 20 H 1.48499 * 109.46978 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 299.99889 * 19 17 15 22 22 H 1.48500 * 109.47286 * 59.99902 * 19 17 15 23 23 C 1.47022 * 108.69827 * 335.54760 * 14 13 12 24 24 N 1.34501 * 125.41558 * 180.02562 * 2 1 3 25 25 H 0.97003 * 126.47084 * 359.95648 * 24 2 1 26 26 H 1.09001 * 109.46954 * 269.97710 * 1 2 3 27 27 H 1.09000 * 109.46814 * 29.96844 * 1 2 3 28 28 H 1.08992 * 109.47741 * 149.97297 * 1 2 3 29 29 H 1.08002 * 126.10820 * 180.27401 * 4 3 2 30 30 H 1.08997 * 109.47245 * 276.06052 * 9 8 6 31 31 H 1.09000 * 109.46990 * 36.06643 * 9 8 6 32 32 H 1.09005 * 109.46728 * 156.05766 * 9 8 6 33 33 H 1.08998 * 111.00794 * 200.93043 * 12 10 8 34 34 H 1.09002 * 111.00243 * 324.75552 * 12 10 8 35 35 H 1.08995 * 110.50184 * 278.45220 * 13 12 10 36 36 H 1.09002 * 110.33971 * 156.06231 * 13 12 10 37 37 H 0.97004 * 119.99967 * 357.16686 * 18 17 15 38 38 H 1.09008 * 109.87914 * 120.71114 * 23 14 13 39 39 H 1.09001 * 109.88148 * 241.86708 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7047 0.0047 5 6 3.5975 -0.6610 -0.0009 6 6 4.8027 -1.4985 -0.0007 7 8 5.8940 -0.9942 0.1879 8 7 4.7008 -2.8261 -0.2096 9 6 3.3850 -3.4363 -0.4153 10 6 5.9059 -3.6589 -0.2308 11 1 6.7940 -3.0592 -0.0314 12 6 5.7880 -4.8213 0.7901 13 6 4.9684 -5.8608 -0.0188 14 7 5.4699 -5.7406 -1.4000 15 6 5.4120 -6.7173 -2.3579 16 1 5.9229 -6.5811 -3.2997 17 6 4.6968 -7.8827 -2.1186 18 7 3.5942 -7.8425 -1.4011 19 14 5.2993 -9.5080 -2.8149 20 1 4.3656 -10.5927 -2.4189 21 1 5.3576 -9.4207 -4.2962 22 1 6.6540 -9.8028 -2.2827 23 6 6.0365 -4.3960 -1.5803 24 7 2.2864 -1.0961 -0.0005 25 1 1.9848 -2.0181 -0.0003 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8896 -0.5142 29 1 4.3979 1.3719 0.0100 30 1 2.9249 -3.6421 0.5511 31 1 2.7519 -2.7528 -0.9810 32 1 3.4993 -4.3682 -0.9692 33 1 6.7711 -5.2123 1.0522 34 1 5.2452 -4.5053 1.6810 35 1 3.9054 -5.6233 0.0209 36 1 5.1480 -6.8655 0.3638 37 1 3.3034 -7.0061 -1.0051 38 1 7.0870 -4.4711 -1.8616 39 1 5.4818 -3.8602 -2.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032959356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:19 Heat of formation + Delta-G solvation = 55.980837 kcal Electronic energy + Delta-G solvation = -22230.920860 eV Core-core repulsion = 18982.596870 eV Total energy + Delta-G solvation = -3248.323990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.45535 -41.18825 -39.19768 -36.45301 -34.61283 -33.51664 -32.76743 -31.04643 -29.95145 -28.74451 -27.64322 -26.18355 -24.23740 -22.60463 -22.09878 -21.49075 -20.78286 -19.69478 -18.80692 -17.96979 -17.21929 -17.06640 -16.37853 -16.03294 -15.81534 -15.61745 -15.13063 -15.03540 -14.58853 -14.33463 -14.20798 -13.81373 -13.67785 -13.52294 -13.36651 -13.24328 -12.75312 -12.62911 -12.47933 -12.22100 -12.01800 -11.88430 -11.68923 -11.44857 -11.24806 -11.11452 -10.39276 -10.02762 -9.54823 -9.03205 -8.46354 -5.25955 0.14603 1.56113 1.58356 1.65214 1.65431 1.84234 1.94209 2.16304 2.59438 3.15136 3.21352 3.42059 3.51009 3.62575 3.75490 3.81298 3.98976 4.11890 4.19210 4.25719 4.37149 4.39792 4.52717 4.57635 4.72431 4.73323 4.81534 4.84075 4.89949 5.03973 5.08441 5.17671 5.34429 5.43943 5.64907 6.08904 6.17461 6.32049 6.77550 6.85207 6.86855 7.69442 8.26370 8.97073 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.004503 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.266469 B = 6216.555107 C = 6881.712586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.243 3.757 3 N -0.525 5.525 4 C 0.064 3.936 5 C -0.102 4.102 6 C 0.595 3.405 7 O -0.563 6.563 8 N -0.592 5.592 9 C 0.052 3.948 10 C 0.139 3.861 11 H 0.113 0.887 12 C -0.129 4.129 13 C 0.139 3.861 14 N -0.619 5.619 15 C -0.360 4.360 16 H 0.057 0.943 17 C -0.066 4.066 18 N -0.934 5.934 19 Si 1.112 2.888 20 H -0.290 1.290 21 H -0.278 1.278 22 H -0.285 1.285 23 C 0.129 3.871 24 N -0.549 5.549 25 H 0.436 0.564 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.187 0.813 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.033 0.967 36 H 0.022 0.978 37 H 0.260 0.740 38 H 0.038 0.962 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 11.930 5.205 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 N -0.245 5.245 4 C -0.091 4.091 5 C -0.218 4.218 6 C 0.385 3.615 7 O -0.442 6.442 8 N -0.323 5.323 9 C -0.091 4.091 10 C 0.035 3.965 11 H 0.131 0.869 12 C -0.168 4.168 13 C 0.014 3.986 14 N -0.347 5.347 15 C -0.488 4.488 16 H 0.075 0.925 17 C -0.263 4.263 18 N -0.577 5.577 19 Si 0.937 3.063 20 H -0.216 1.216 21 H -0.204 1.204 22 H -0.212 1.212 23 C 0.003 3.997 24 N -0.163 5.163 25 H 0.286 0.714 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.204 0.796 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.358 11.259 5.069 13.888 hybrid contribution 0.717 0.253 -0.178 0.781 sum -5.641 11.512 4.891 13.721 Atomic orbital electron populations 1.20568 0.80961 1.06061 1.05690 1.24398 0.97610 0.81158 0.98935 1.70215 1.02022 1.29625 1.22665 1.22827 0.95394 0.91302 0.99541 1.20831 0.84191 0.95638 1.21152 1.17140 0.87219 0.81036 0.76113 1.90792 1.27994 1.73281 1.52121 1.47664 1.08173 1.06359 1.70143 1.22502 0.83637 1.00345 1.02593 1.21972 0.88063 0.91380 0.95116 0.86922 1.23113 1.01819 0.94594 0.97237 1.21782 0.95912 0.96593 0.84329 1.44769 1.70754 1.10733 1.08413 1.19868 1.32756 0.97696 0.98502 0.92501 1.26853 0.93447 1.03990 1.02024 1.70984 1.17391 1.31022 1.38261 0.82851 0.75322 0.72438 0.75667 1.21584 1.20438 1.21205 1.21678 0.97029 0.85744 0.95218 1.44340 1.05165 1.11544 1.55216 0.71450 0.87700 0.87968 0.88121 0.79605 0.89828 0.90014 0.89898 0.89406 0.89115 0.94910 0.95980 0.92856 0.94445 0.96569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.51 71.23 0.75 0.01 16 2 C 0.24 4.84 8.12 138.20 1.12 5.96 16 3 N -0.52 -13.51 11.20 -187.40 -2.10 -15.61 16 4 C 0.06 1.74 11.67 84.10 0.98 2.72 16 5 C -0.10 -2.80 6.65 40.01 0.27 -2.54 16 6 C 0.59 18.99 7.65 86.47 0.66 19.65 16 7 O -0.56 -20.98 16.29 -4.30 -0.07 -21.05 16 8 N -0.59 -18.28 2.82 -820.58 -2.32 -20.60 16 9 C 0.05 1.40 7.17 127.77 0.92 2.32 16 10 C 0.14 4.72 3.58 46.18 0.17 4.88 16 11 H 0.11 3.81 7.00 -2.39 -0.02 3.79 16 12 C -0.13 -4.26 6.54 32.06 0.21 -4.05 16 13 C 0.14 5.89 4.33 86.93 0.38 6.26 16 14 N -0.62 -29.72 2.94 -691.52 -2.03 -31.75 16 15 C -0.36 -19.77 10.00 84.04 0.84 -18.93 16 16 H 0.06 3.18 8.02 -2.91 -0.02 3.16 16 17 C -0.07 -3.59 4.95 84.86 0.42 -3.17 16 18 N -0.93 -53.48 12.99 21.65 0.28 -53.20 16 19 Si 1.11 49.67 30.03 68.60 2.06 51.73 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.13 5.31 6.30 86.73 0.55 5.85 16 24 N -0.55 -11.42 5.12 -176.12 -0.90 -12.32 16 25 H 0.44 7.21 5.12 -92.71 -0.47 6.73 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.19 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.08 1.81 7.81 -2.39 -0.02 1.80 16 31 H 0.08 1.86 5.10 -2.39 -0.01 1.84 16 32 H 0.08 2.92 4.73 -2.38 -0.01 2.91 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.03 1.39 4.37 -2.39 -0.01 1.38 16 36 H 0.02 1.07 7.63 -2.39 -0.02 1.05 16 37 H 0.26 14.61 5.89 -92.71 -0.55 14.06 16 38 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.02 0.70 8.04 -2.39 -0.02 0.69 16 Total: -1.00 -70.54 310.79 3.01 -67.53 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.83 Total: 16.29 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 7.25 Total: 18.97 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -7.07 Total: -133.47 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.07 Total: -21.05 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.06 Total: 51.73 kcal Total: -70.54 3.01 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032959356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.516 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds