Wall clock time and date at job start Tue Mar 31 2020 00:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46667 * 2 1 4 4 C 1.35360 * 126.38259 * 85.00118 * 3 2 1 5 5 C 1.41509 * 105.49772 * 179.97438 * 4 3 2 6 6 C 1.47716 * 126.51459 * 180.02562 * 5 4 3 7 7 O 1.21573 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47237 * 179.72043 * 9 8 6 11 11 H 1.09000 * 112.73741 * 56.23743 * 10 9 8 12 12 C 1.53499 * 113.46773 * 187.05566 * 10 9 8 13 13 C 1.53492 * 83.34104 * 140.85030 * 12 10 9 14 14 N 1.47058 * 113.46845 * 285.49490 * 10 9 8 15 15 C 1.36945 * 136.06066 * 38.06655 * 14 10 9 16 16 H 1.08002 * 119.99447 * 359.97438 * 15 14 10 17 17 C 1.38813 * 120.00109 * 180.02562 * 15 14 10 18 18 N 1.31617 * 119.99859 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47192 * 60.00138 * 19 17 15 21 21 H 1.48501 * 109.46992 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47369 * 299.99733 * 19 17 15 23 23 N 1.31801 * 106.96504 * 0.25878 * 5 4 3 24 24 N 1.28471 * 110.07196 * 359.56047 * 23 5 4 25 25 H 0.97004 * 124.88255 * 180.16079 * 24 23 5 26 26 H 1.08991 * 109.46936 * 60.00321 * 1 2 3 27 27 H 1.09003 * 109.46430 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47321 * 299.99753 * 1 2 3 29 29 H 1.09001 * 109.47321 * 240.00247 * 2 1 3 30 30 H 1.08996 * 109.47361 * 119.99812 * 2 1 3 31 31 H 1.07997 * 127.25356 * 359.97438 * 4 3 2 32 32 H 0.97005 * 120.00161 * 359.71797 * 8 6 5 33 33 H 1.09001 * 109.46512 * 299.72412 * 9 8 6 34 34 H 1.08998 * 109.47174 * 59.71534 * 9 8 6 35 35 H 1.08999 * 114.20392 * 254.43968 * 12 10 9 36 36 H 1.09000 * 114.20290 * 27.26155 * 12 10 9 37 37 H 1.09000 * 113.46970 * 219.15320 * 13 12 10 38 38 H 1.09002 * 113.47037 * 88.71759 * 13 12 10 39 39 H 0.97007 * 119.99519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2103 2.2096 1.0856 5 6 2.6929 3.4413 0.5831 6 6 3.0430 4.6374 1.3760 7 8 2.9245 4.6208 2.5858 8 7 3.4927 5.7475 0.7581 9 6 3.8394 6.9341 1.5444 10 6 4.3254 8.0423 0.6081 11 1 3.5978 8.2900 -0.1647 12 6 4.8756 9.2697 1.3476 13 6 5.9169 9.2598 0.2200 14 7 5.6808 7.8145 0.0850 15 6 6.4048 6.7326 -0.3400 16 1 5.9612 5.7479 -0.3289 17 6 7.7091 6.9013 -0.7840 18 7 8.2498 8.1012 -0.7969 19 14 8.6969 5.4254 -1.3630 20 1 8.0063 4.7877 -2.5127 21 1 10.0501 5.8696 -1.7835 22 1 8.8195 4.4457 -0.2538 23 7 2.7659 3.3200 -0.7273 24 7 2.3891 2.1443 -1.0829 25 1 2.3607 1.8240 -1.9981 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0234 1.9530 2.1178 32 1 3.5904 5.7597 -0.2069 33 1 2.9603 7.2783 2.0894 34 1 4.6299 6.6831 2.2516 35 1 4.2113 10.1339 1.3351 36 1 5.2834 9.0512 2.3346 37 1 6.9239 9.5055 0.5569 38 1 5.6134 9.8329 -0.6562 39 1 9.1612 8.2192 -1.1075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038068532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:23 Heat of formation + Delta-G solvation = 86.180682 kcal Electronic energy + Delta-G solvation = -21338.954457 eV Core-core repulsion = 18091.940030 eV Total energy + Delta-G solvation = -3247.014427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.67983 -39.10166 -37.92883 -34.57258 -33.91980 -32.18645 -31.82591 -29.52669 -28.03988 -27.58903 -24.04497 -23.80817 -23.42028 -21.59064 -21.10489 -19.81141 -19.07060 -17.73300 -17.02537 -16.30425 -15.82417 -15.43974 -15.10921 -14.71323 -14.31649 -14.24375 -13.86715 -13.68805 -13.44713 -13.11617 -12.80934 -12.71191 -11.92595 -11.84184 -11.50439 -11.48004 -11.06598 -10.93483 -10.78395 -10.73064 -10.54890 -10.02851 -9.79504 -9.73268 -9.36993 -9.18014 -9.01450 -8.76703 -8.46422 -6.85513 -5.72555 -3.04603 1.70261 2.10449 2.80904 3.41417 3.45744 3.46676 3.59718 3.75058 4.38082 4.47760 4.51246 4.69767 4.91695 5.16434 5.24029 5.31079 5.43290 5.46602 5.55277 5.61492 5.63464 5.80213 5.82344 5.90492 5.97545 6.15727 6.34634 6.40409 6.45367 6.64413 6.77391 6.90757 6.98276 7.27577 7.43879 7.62444 7.77662 8.02313 8.08826 8.62147 9.08200 9.74825 10.67332 11.44749 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004743 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.432914 B = 5901.598269 C = 7082.957844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.010 3.990 4 C -0.177 4.177 5 C -0.004 4.004 6 C 0.597 3.403 7 O -0.545 6.545 8 N -0.698 5.698 9 C 0.121 3.879 10 C 0.127 3.873 11 H 0.049 0.951 12 C -0.160 4.160 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.211 4.211 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 N -0.253 5.253 24 N -0.382 5.382 25 H 0.443 0.557 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 -11.980 0.140 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.205 4.205 5 C -0.165 4.165 6 C 0.381 3.619 7 O -0.422 6.422 8 N -0.348 5.348 9 C -0.004 4.004 10 C 0.019 3.981 11 H 0.066 0.934 12 C -0.199 4.199 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.338 4.338 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.212 1.212 23 N -0.089 5.089 24 N -0.096 5.096 25 H 0.287 0.713 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.352 -11.511 -0.044 18.398 hybrid contribution 0.469 -1.388 -0.846 1.691 sum -13.883 -12.898 -0.890 18.971 Atomic orbital electron populations 1.21783 0.94102 1.02121 1.02680 1.20099 0.96345 0.88798 1.03942 1.21414 1.05840 0.96849 0.87485 1.21482 1.06879 0.92431 0.99667 1.22073 1.07549 0.97112 0.89812 1.16893 0.77461 0.81279 0.86277 1.90753 1.55223 1.83015 1.13166 1.45849 1.64291 1.12818 1.11843 1.21866 0.99355 0.84390 0.94759 1.22423 0.89860 0.92256 0.93550 0.93404 1.23661 0.99957 0.96488 0.99841 1.22028 0.97768 0.85279 0.92343 1.45679 1.07967 1.03436 1.75590 1.18846 0.93562 0.85681 1.35753 0.90180 1.24746 0.97100 0.96604 1.01916 1.69820 1.14422 1.20031 1.52437 0.86261 0.79423 0.81882 0.78595 1.21314 1.21567 1.21161 1.73645 1.17596 1.02335 1.15275 1.43317 1.47814 1.08652 1.09789 0.71321 0.92716 0.91835 0.91842 0.90706 0.89071 0.82180 0.75512 0.92048 0.90874 0.92325 0.90148 0.90978 0.95780 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.52 16 2 C -0.05 -0.35 6.49 -27.88 -0.18 -0.53 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -2.43 10.73 -39.36 -0.42 -2.85 16 5 C 0.00 -0.07 7.13 -82.76 -0.59 -0.66 16 6 C 0.60 11.48 7.83 -12.39 -0.10 11.39 16 7 O -0.55 -11.65 16.93 5.30 0.09 -11.56 16 8 N -0.70 -13.30 5.33 -61.29 -0.33 -13.62 16 9 C 0.12 2.31 5.52 -4.04 -0.02 2.29 16 10 C 0.13 2.54 4.10 -72.41 -0.30 2.24 16 11 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.16 -2.99 8.03 -26.22 -0.21 -3.20 16 13 C 0.15 3.54 7.39 -8.52 -0.06 3.48 16 14 N -0.60 -15.09 3.65 -177.03 -0.65 -15.74 16 15 C -0.21 -5.86 10.55 -15.06 -0.16 -6.02 16 16 H 0.08 2.18 7.51 -52.49 -0.39 1.78 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -27.50 11.51 55.49 0.64 -26.86 16 19 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 N -0.25 -3.88 11.92 33.42 0.40 -3.48 16 24 N -0.38 -4.28 6.83 33.50 0.23 -4.05 16 25 H 0.44 3.29 8.96 -190.43 -1.71 1.58 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 32 H 0.41 7.82 8.10 -40.82 -0.33 7.49 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.49 8.12 -51.93 -0.42 1.06 16 37 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -34.20 334.29 -8.92 -43.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.01 Total: 4.64 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.30 Total: 4.88 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: 0.29 Total: -63.76 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.20 -8.92 -43.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038068532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.292 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds