Wall clock time and date at job start Tue Mar 31 2020 00:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50710 * 109.46667 * 2 1 4 4 C 1.35360 * 126.38259 * 85.00118 * 3 2 1 5 5 C 1.41509 * 105.49772 * 179.97438 * 4 3 2 6 6 C 1.47716 * 126.51459 * 180.02562 * 5 4 3 7 7 O 1.21573 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99720 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47237 * 179.72043 * 9 8 6 11 11 H 1.09000 * 112.73741 * 56.23743 * 10 9 8 12 12 C 1.53499 * 113.46773 * 187.05566 * 10 9 8 13 13 C 1.53492 * 83.34104 * 140.85030 * 12 10 9 14 14 N 1.47058 * 113.46845 * 285.49490 * 10 9 8 15 15 C 1.36945 * 136.06066 * 38.06655 * 14 10 9 16 16 H 1.08002 * 119.99447 * 359.97438 * 15 14 10 17 17 C 1.38813 * 120.00109 * 180.02562 * 15 14 10 18 18 N 1.31617 * 119.99859 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47192 * 60.00138 * 19 17 15 21 21 H 1.48501 * 109.46992 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47369 * 299.99733 * 19 17 15 23 23 N 1.31801 * 106.96504 * 0.25878 * 5 4 3 24 24 N 1.28471 * 110.07196 * 359.56047 * 23 5 4 25 25 H 0.97004 * 124.88255 * 180.16079 * 24 23 5 26 26 H 1.08991 * 109.46936 * 60.00321 * 1 2 3 27 27 H 1.09003 * 109.46430 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47321 * 299.99753 * 1 2 3 29 29 H 1.09001 * 109.47321 * 240.00247 * 2 1 3 30 30 H 1.08996 * 109.47361 * 119.99812 * 2 1 3 31 31 H 1.07997 * 127.25356 * 359.97438 * 4 3 2 32 32 H 0.97005 * 120.00161 * 359.71797 * 8 6 5 33 33 H 1.09001 * 109.46512 * 299.72412 * 9 8 6 34 34 H 1.08998 * 109.47174 * 59.71534 * 9 8 6 35 35 H 1.08999 * 114.20392 * 254.43968 * 12 10 9 36 36 H 1.09000 * 114.20290 * 27.26155 * 12 10 9 37 37 H 1.09000 * 113.46970 * 219.15320 * 13 12 10 38 38 H 1.09002 * 113.47037 * 88.71759 * 13 12 10 39 39 H 0.97007 * 119.99519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2103 2.2096 1.0856 5 6 2.6929 3.4413 0.5831 6 6 3.0430 4.6374 1.3760 7 8 2.9245 4.6208 2.5858 8 7 3.4927 5.7475 0.7581 9 6 3.8394 6.9341 1.5444 10 6 4.3254 8.0423 0.6081 11 1 3.5978 8.2900 -0.1647 12 6 4.8756 9.2697 1.3476 13 6 5.9169 9.2598 0.2200 14 7 5.6808 7.8145 0.0850 15 6 6.4048 6.7326 -0.3400 16 1 5.9612 5.7479 -0.3289 17 6 7.7091 6.9013 -0.7840 18 7 8.2498 8.1012 -0.7969 19 14 8.6969 5.4254 -1.3630 20 1 8.0063 4.7877 -2.5127 21 1 10.0501 5.8696 -1.7835 22 1 8.8195 4.4457 -0.2538 23 7 2.7659 3.3200 -0.7273 24 7 2.3891 2.1443 -1.0829 25 1 2.3607 1.8240 -1.9981 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0234 1.9530 2.1178 32 1 3.5904 5.7597 -0.2069 33 1 2.9603 7.2783 2.0894 34 1 4.6299 6.6831 2.2516 35 1 4.2113 10.1339 1.3351 36 1 5.2834 9.0512 2.3346 37 1 6.9239 9.5055 0.5569 38 1 5.6134 9.8329 -0.6562 39 1 9.1612 8.2192 -1.1075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038068532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:21 Heat of formation + Delta-G solvation = 61.289666 kcal Electronic energy + Delta-G solvation = -21340.033812 eV Core-core repulsion = 18091.940030 eV Total energy + Delta-G solvation = -3248.093782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.71654 -40.66985 -39.61670 -35.60605 -35.14033 -34.24656 -32.94804 -30.43956 -29.95231 -29.17733 -25.39531 -25.25887 -24.61612 -23.16763 -22.05990 -21.33471 -20.75397 -18.73346 -18.65459 -17.84071 -17.16141 -16.97300 -16.76792 -16.02287 -15.66020 -15.52638 -15.27821 -14.85604 -14.79385 -14.54962 -14.17277 -13.64427 -13.35168 -13.29012 -12.96557 -12.71524 -12.60538 -12.50365 -12.35129 -12.08623 -11.87445 -11.72640 -11.65097 -11.41130 -10.94333 -10.82812 -10.51019 -10.00128 -9.97440 -8.88938 -7.87945 -5.19138 0.49393 1.10192 1.40528 1.43392 1.49281 1.87063 2.25265 2.37032 2.46764 3.32586 3.36283 3.48181 3.67495 3.91506 4.00228 4.13035 4.34689 4.35816 4.42460 4.52300 4.63755 4.68944 4.71977 4.81388 4.89761 5.06712 5.08155 5.09520 5.20154 5.29358 5.32944 5.40454 5.42246 5.59234 5.75089 5.97741 6.09683 6.45891 6.85159 6.94611 7.14435 7.63738 8.63762 9.29417 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004743 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.432914 B = 5901.598269 C = 7082.957844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.037 3.963 4 C -0.199 4.199 5 C -0.036 4.036 6 C 0.594 3.406 7 O -0.575 6.575 8 N -0.700 5.700 9 C 0.128 3.872 10 C 0.131 3.869 11 H 0.067 0.933 12 C -0.131 4.131 13 C 0.143 3.857 14 N -0.630 5.630 15 C -0.207 4.207 16 H 0.080 0.920 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.967 3.033 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.285 1.285 23 N -0.275 5.275 24 N -0.364 5.364 25 H 0.460 0.540 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.023 0.977 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 -13.837 -0.411 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.090 4.090 4 C -0.227 4.227 5 C -0.196 4.196 6 C 0.380 3.620 7 O -0.454 6.454 8 N -0.349 5.349 9 C 0.004 3.996 10 C 0.025 3.975 11 H 0.084 0.916 12 C -0.170 4.170 13 C 0.018 3.982 14 N -0.356 5.356 15 C -0.336 4.336 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.796 3.204 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.212 1.212 23 N -0.112 5.112 24 N -0.081 5.081 25 H 0.308 0.692 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.182 0.818 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.205 -13.370 -0.611 21.017 hybrid contribution 0.929 -0.866 -0.694 1.448 sum -15.276 -14.236 -1.305 20.922 Atomic orbital electron populations 1.21774 0.93348 1.03298 1.02095 1.20312 0.96779 0.86027 1.05821 1.21946 1.03032 0.97952 0.86050 1.21684 1.08014 0.92078 1.00952 1.21857 1.09956 0.97224 0.90545 1.17261 0.76685 0.81868 0.86201 1.90716 1.56564 1.83658 1.14415 1.45858 1.64293 1.13001 1.11702 1.21721 0.99424 0.84336 0.94132 1.22583 0.88046 0.93017 0.93852 0.91557 1.23476 0.98255 0.97309 0.97942 1.22054 0.97464 0.84591 0.94122 1.45999 1.10396 1.03575 1.75597 1.19117 0.93835 0.86687 1.33931 0.90242 1.25483 0.98366 0.98923 1.03321 1.69995 1.14264 1.21709 1.54216 0.85325 0.77887 0.79040 0.78171 1.20378 1.21865 1.21190 1.73552 1.18619 1.04277 1.14723 1.43423 1.46092 1.07579 1.11020 0.69207 0.92807 0.89804 0.92989 0.88092 0.87947 0.81812 0.75599 0.89663 0.93542 0.87977 0.90030 0.94436 0.95957 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 71.98 0.71 -0.57 16 2 C -0.05 -0.49 6.49 29.85 0.19 -0.30 16 3 C 0.04 0.70 6.48 41.41 0.27 0.97 16 4 C -0.20 -5.31 10.73 22.41 0.24 -5.07 16 5 C -0.04 -1.21 7.13 42.46 0.30 -0.90 16 6 C 0.59 23.06 7.83 86.75 0.68 23.74 16 7 O -0.57 -24.92 16.93 -3.94 -0.07 -24.99 16 8 N -0.70 -26.59 5.33 -466.09 -2.48 -29.08 16 9 C 0.13 4.82 5.52 86.38 0.48 5.30 16 10 C 0.13 5.09 4.10 41.78 0.17 5.26 16 11 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 12 C -0.13 -4.64 8.03 30.93 0.25 -4.39 16 13 C 0.14 6.72 7.39 83.17 0.61 7.33 16 14 N -0.63 -31.73 3.65 -714.00 -2.61 -34.34 16 15 C -0.21 -11.63 10.55 84.03 0.89 -10.75 16 16 H 0.08 4.36 7.51 -2.91 -0.02 4.34 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 18 N -0.95 -58.43 11.51 21.65 0.25 -58.18 16 19 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 N -0.27 -8.18 11.92 -48.17 -0.57 -8.75 16 24 N -0.36 -7.39 6.83 -47.93 -0.33 -7.72 16 25 H 0.46 5.55 8.96 -219.99 -1.97 3.58 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.41 15.59 8.10 -92.70 -0.75 14.84 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.79 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.08 2.89 8.12 -2.39 -0.02 2.87 16 37 H 0.04 2.00 7.12 -2.39 -0.02 1.99 16 38 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -76.02 334.29 -0.17 -76.19 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -1.65 Total: 20.39 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.26 Total: 17.12 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -5.74 Total: -138.08 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.07 Total: -24.99 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -76.02 -0.17 -76.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038068532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.483 kcal (2) G-P(sol) polarization free energy of solvation -76.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds