Wall clock time and date at job start Mon Mar 30 2020 23:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30847 * 125.41913 * 2 1 4 4 C 1.33324 * 109.68866 * 180.02562 * 3 2 1 5 5 C 1.36665 * 107.78217 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84015 * 179.97438 * 5 4 3 7 7 O 1.21685 * 119.99462 * 184.99322 * 6 5 4 8 8 N 1.34773 * 120.00559 * 4.99786 * 6 5 4 9 9 C 1.46498 * 120.00164 * 174.84860 * 8 6 5 10 10 C 1.53002 * 109.47000 * 180.02562 * 9 8 6 11 11 H 1.08997 * 112.96638 * 53.32303 * 10 9 8 12 12 C 1.53952 * 113.76837 * 184.99968 * 10 9 8 13 13 C 1.53943 * 86.28595 * 137.90843 * 12 10 9 14 14 N 1.47576 * 113.76745 * 281.49447 * 10 9 8 15 15 C 1.36935 * 134.49335 * 41.06419 * 14 10 9 16 16 H 1.07992 * 120.00361 * 359.97438 * 15 14 10 17 17 C 1.38817 * 119.99934 * 180.02562 * 15 14 10 18 18 N 1.31621 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47030 * 89.99672 * 19 17 15 21 21 H 1.48509 * 109.46565 * 209.99299 * 19 17 15 22 22 H 1.48495 * 109.46974 * 329.98985 * 19 17 15 23 23 N 1.34499 * 125.41829 * 180.31662 * 2 1 3 24 24 C 1.46507 * 126.47321 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47707 * 89.97725 * 1 2 3 26 26 H 1.09003 * 109.47449 * 209.97577 * 1 2 3 27 27 H 1.09004 * 109.46990 * 329.97459 * 1 2 3 28 28 H 1.08003 * 126.10754 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99352 * 355.12534 * 8 6 5 30 30 H 1.09002 * 109.47122 * 299.99830 * 9 8 6 31 31 H 1.08997 * 109.47239 * 59.99764 * 9 8 6 32 32 H 1.08998 * 113.73859 * 252.25693 * 12 10 9 33 33 H 1.08997 * 113.73866 * 23.45450 * 12 10 9 34 34 H 1.08997 * 113.77139 * 90.69958 * 13 12 10 35 35 H 1.09008 * 113.76703 * 221.97805 * 13 12 10 36 36 H 0.97002 * 119.99957 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46908 * 275.03819 * 24 23 2 38 38 H 1.09003 * 109.46870 * 35.03524 * 24 23 2 39 39 H 1.08995 * 109.47170 * 155.03450 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0663 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8028 -1.4983 -0.0013 7 8 4.7033 -2.7076 -0.0927 8 7 6.0198 -0.9279 0.0991 9 6 7.2151 -1.7673 0.2119 10 6 8.4557 -0.8774 0.3118 11 1 8.3834 -0.1347 1.1062 12 6 9.7819 -1.6593 0.3121 13 6 10.3109 -0.5661 -0.6338 14 7 8.8975 -0.3253 -0.9835 15 6 8.2544 0.1996 -2.0725 16 1 7.1767 0.2680 -2.0821 17 6 8.9877 0.6429 -3.1647 18 7 10.3012 0.5591 -3.1533 19 14 8.1103 1.3583 -4.6505 20 1 7.9542 2.8246 -4.4747 21 1 8.9081 1.0886 -5.8737 22 1 6.7713 0.7304 -4.7844 23 7 2.2865 -1.0961 -0.0061 24 6 1.8311 -2.4886 -0.0143 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.3978 1.3722 -0.0011 29 1 6.1038 0.0384 0.1008 30 1 7.1406 -2.3877 1.1050 31 1 7.2953 -2.4056 -0.6681 32 1 10.2793 -1.6791 1.2818 33 1 9.7106 -2.6443 -0.1491 34 1 10.7845 0.2694 -0.1183 35 1 10.9101 -0.9514 -1.4589 36 1 10.8136 0.8692 -3.9163 37 1 1.6320 -2.8117 1.0075 38 1 0.9186 -2.5689 -0.6051 39 1 2.6038 -3.1209 -0.4514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038635823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:52 Heat of formation + Delta-G solvation = 77.935434 kcal Electronic energy + Delta-G solvation = -21648.469288 eV Core-core repulsion = 18401.097320 eV Total energy + Delta-G solvation = -3247.371967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.26097 -39.15841 -37.84999 -34.59626 -33.73508 -32.23246 -31.96506 -28.81265 -27.89955 -27.24228 -26.41474 -23.37057 -23.05244 -21.92261 -20.37395 -19.83840 -19.10279 -17.77080 -16.63480 -16.23220 -15.98580 -15.56891 -15.24353 -14.52441 -14.27800 -13.93991 -13.80687 -13.51828 -13.49574 -13.15922 -12.97112 -12.84178 -12.56031 -12.53803 -11.90153 -11.43746 -11.13088 -11.02348 -10.72353 -10.56967 -10.34802 -9.99457 -9.76895 -9.75493 -9.69451 -9.41433 -8.79742 -8.76944 -8.38259 -6.89959 -5.76385 -3.09004 1.34896 2.45792 2.80435 3.39583 3.45738 3.46535 3.49826 3.55833 4.24356 4.43454 4.60019 4.73195 4.94977 5.02533 5.11776 5.22291 5.28324 5.38346 5.40820 5.44034 5.59626 5.61530 5.68026 5.89938 6.01526 6.12314 6.28800 6.38591 6.49932 6.60149 6.66822 6.81991 6.98913 7.24429 7.39779 7.59177 7.74432 7.91026 7.98480 8.40734 9.04495 9.71406 10.58653 11.40229 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.005043 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.328420 B = 5550.448267 C = 6591.740136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.218 3.782 3 N -0.494 5.494 4 C 0.040 3.960 5 C -0.081 4.081 6 C 0.591 3.409 7 O -0.558 6.558 8 N -0.698 5.698 9 C 0.126 3.874 10 C 0.125 3.875 11 H 0.051 0.949 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.906 3.094 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 N -0.426 5.426 24 C 0.064 3.936 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.181 0.819 29 H 0.405 0.595 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 -4.263 9.181 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 N -0.213 5.213 4 C -0.114 4.114 5 C -0.198 4.198 6 C 0.377 3.623 7 O -0.438 6.438 8 N -0.347 5.347 9 C 0.002 3.998 10 C 0.017 3.983 11 H 0.068 0.932 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.328 5.328 15 C -0.348 4.348 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.736 3.264 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.107 5.107 24 C -0.078 4.078 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.198 0.802 29 H 0.241 0.759 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.178 -4.383 8.790 18.079 hybrid contribution -0.034 0.235 -0.897 0.928 sum -15.212 -4.149 7.893 17.633 Atomic orbital electron populations 1.20235 0.84542 1.04177 1.03756 1.23406 0.95852 0.81295 1.03781 1.70087 1.02222 1.28084 1.20907 1.22705 0.95135 0.91444 1.02153 1.20847 0.85352 0.95011 1.18569 1.16745 0.82237 0.86502 0.76796 1.90729 1.86916 1.14273 1.51891 1.45622 1.05204 1.11157 1.72725 1.21832 0.82872 0.93653 1.01467 1.22520 0.91901 0.93469 0.90389 0.93153 1.23773 0.96389 0.99757 0.99483 1.22195 0.88157 0.91988 0.94291 1.46077 1.02389 1.72787 1.11553 1.18941 0.90598 1.33575 0.91637 0.90349 1.24743 0.95536 1.01638 0.98291 1.69818 1.04089 1.52024 1.30700 0.86214 0.78536 0.79010 0.82617 1.21556 1.21657 1.20691 1.45044 1.05195 1.08205 1.52230 1.22303 1.02556 0.79226 1.03730 0.89875 0.90694 0.88848 0.80218 0.75943 0.92007 0.90632 0.92769 0.90492 0.95535 0.90817 0.93698 0.90410 0.89775 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.01 36.00 0.36 -0.17 16 2 C 0.22 2.81 7.88 -155.62 -1.23 1.58 16 3 N -0.49 -7.58 11.20 -10.58 -0.12 -7.69 16 4 C 0.04 0.61 11.37 -17.47 -0.20 0.41 16 5 C -0.08 -1.29 6.91 -82.15 -0.57 -1.85 16 6 C 0.59 10.31 7.78 -12.82 -0.10 10.21 16 7 O -0.56 -10.80 14.77 5.20 0.08 -10.73 16 8 N -0.70 -11.84 5.51 -61.59 -0.34 -12.18 16 9 C 0.13 2.23 5.54 -4.04 -0.02 2.20 16 10 C 0.12 2.34 4.33 -66.86 -0.29 2.05 16 11 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.16 -2.77 7.86 -25.80 -0.20 -2.97 16 13 C 0.16 3.60 7.51 -2.98 -0.02 3.57 16 14 N -0.60 -14.47 3.57 -170.73 -0.61 -15.08 16 15 C -0.22 -5.89 10.51 -15.06 -0.16 -6.04 16 16 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 18 N -0.92 -26.91 11.39 55.49 0.63 -26.27 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 N -0.43 -5.76 3.17 -117.27 -0.37 -6.14 16 24 C 0.06 0.65 10.36 59.85 0.62 1.27 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.41 7.80 -51.93 -0.41 0.01 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.18 2.42 7.46 -52.48 -0.39 2.03 16 29 H 0.41 6.52 7.42 -40.82 -0.30 6.22 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.86 7.16 -51.92 -0.37 1.49 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 39 H 0.11 1.38 6.15 -51.93 -0.32 1.06 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -33.77 329.30 -8.24 -42.01 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.55 Total: 3.86 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.90 Total: 10.02 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.81 Total: -67.37 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.77 -8.24 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038635823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.946 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds