Wall clock time and date at job start Mon Mar 30 2020 23:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30847 * 125.41913 * 2 1 4 4 C 1.33324 * 109.68866 * 180.02562 * 3 2 1 5 5 C 1.36665 * 107.78217 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84015 * 179.97438 * 5 4 3 7 7 O 1.21685 * 119.99462 * 184.99322 * 6 5 4 8 8 N 1.34773 * 120.00559 * 4.99786 * 6 5 4 9 9 C 1.46498 * 120.00164 * 174.84860 * 8 6 5 10 10 C 1.53002 * 109.47000 * 180.02562 * 9 8 6 11 11 H 1.08997 * 112.96638 * 53.32303 * 10 9 8 12 12 C 1.53952 * 113.76837 * 184.99968 * 10 9 8 13 13 C 1.53943 * 86.28595 * 137.90843 * 12 10 9 14 14 N 1.47576 * 113.76745 * 281.49447 * 10 9 8 15 15 C 1.36935 * 134.49335 * 41.06419 * 14 10 9 16 16 H 1.07992 * 120.00361 * 359.97438 * 15 14 10 17 17 C 1.38817 * 119.99934 * 180.02562 * 15 14 10 18 18 N 1.31621 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47030 * 89.99672 * 19 17 15 21 21 H 1.48509 * 109.46565 * 209.99299 * 19 17 15 22 22 H 1.48495 * 109.46974 * 329.98985 * 19 17 15 23 23 N 1.34499 * 125.41829 * 180.31662 * 2 1 3 24 24 C 1.46507 * 126.47321 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47707 * 89.97725 * 1 2 3 26 26 H 1.09003 * 109.47449 * 209.97577 * 1 2 3 27 27 H 1.09004 * 109.46990 * 329.97459 * 1 2 3 28 28 H 1.08003 * 126.10754 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99352 * 355.12534 * 8 6 5 30 30 H 1.09002 * 109.47122 * 299.99830 * 9 8 6 31 31 H 1.08997 * 109.47239 * 59.99764 * 9 8 6 32 32 H 1.08998 * 113.73859 * 252.25693 * 12 10 9 33 33 H 1.08997 * 113.73866 * 23.45450 * 12 10 9 34 34 H 1.08997 * 113.77139 * 90.69958 * 13 12 10 35 35 H 1.09008 * 113.76703 * 221.97805 * 13 12 10 36 36 H 0.97002 * 119.99957 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46908 * 275.03819 * 24 23 2 38 38 H 1.09003 * 109.46870 * 35.03524 * 24 23 2 39 39 H 1.08995 * 109.47170 * 155.03450 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0663 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5975 -0.6609 -0.0004 6 6 4.8028 -1.4983 -0.0013 7 8 4.7033 -2.7076 -0.0927 8 7 6.0198 -0.9279 0.0991 9 6 7.2151 -1.7673 0.2119 10 6 8.4557 -0.8774 0.3118 11 1 8.3834 -0.1347 1.1062 12 6 9.7819 -1.6593 0.3121 13 6 10.3109 -0.5661 -0.6338 14 7 8.8975 -0.3253 -0.9835 15 6 8.2544 0.1996 -2.0725 16 1 7.1767 0.2680 -2.0821 17 6 8.9877 0.6429 -3.1647 18 7 10.3012 0.5591 -3.1533 19 14 8.1103 1.3583 -4.6505 20 1 7.9542 2.8246 -4.4747 21 1 8.9081 1.0886 -5.8737 22 1 6.7713 0.7304 -4.7844 23 7 2.2865 -1.0961 -0.0061 24 6 1.8311 -2.4886 -0.0143 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 4.3978 1.3722 -0.0011 29 1 6.1038 0.0384 0.1008 30 1 7.1406 -2.3877 1.1050 31 1 7.2953 -2.4056 -0.6681 32 1 10.2793 -1.6791 1.2818 33 1 9.7106 -2.6443 -0.1491 34 1 10.7845 0.2694 -0.1183 35 1 10.9101 -0.9514 -1.4589 36 1 10.8136 0.8692 -3.9163 37 1 1.6320 -2.8117 1.0075 38 1 0.9186 -2.5689 -0.6051 39 1 2.6038 -3.1209 -0.4514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038635823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:51 Heat of formation + Delta-G solvation = 54.729350 kcal Electronic energy + Delta-G solvation = -21649.475579 eV Core-core repulsion = 18401.097320 eV Total energy + Delta-G solvation = -3248.378259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.31431 -40.57763 -39.46125 -35.86399 -34.90641 -34.19841 -32.91902 -30.11882 -29.73279 -28.27482 -27.47773 -25.27789 -24.37753 -23.33871 -21.58032 -21.02975 -20.66048 -19.12387 -18.29877 -17.32421 -17.20594 -16.99207 -16.85588 -16.10404 -15.66059 -15.56094 -15.11206 -14.81602 -14.65158 -14.20829 -14.14271 -13.71801 -13.63387 -13.34098 -13.22747 -13.16304 -12.95588 -12.68731 -12.57058 -12.32556 -11.86203 -11.58108 -11.47917 -11.24926 -10.92493 -10.81476 -10.76981 -10.15651 -9.50803 -8.86757 -7.86348 -5.17147 0.21185 1.42918 1.43616 1.44719 1.51287 1.71841 2.23616 2.31878 2.47974 3.32559 3.36716 3.41198 3.65332 3.85253 3.94115 4.00823 4.12425 4.31072 4.35323 4.37421 4.57976 4.61961 4.69119 4.71631 4.72779 4.88539 5.03036 5.08375 5.09972 5.13368 5.34803 5.36316 5.43858 5.63334 5.76934 5.99862 6.06327 6.41962 6.82782 6.97194 7.07998 7.66765 8.61174 9.30456 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.005043 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.328420 B = 5550.448267 C = 6591.740136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.229 3.771 3 N -0.527 5.527 4 C 0.037 3.963 5 C -0.110 4.110 6 C 0.591 3.409 7 O -0.582 6.582 8 N -0.698 5.698 9 C 0.136 3.864 10 C 0.131 3.869 11 H 0.074 0.926 12 C -0.129 4.129 13 C 0.149 3.851 14 N -0.629 5.629 15 C -0.210 4.210 16 H 0.082 0.918 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.278 1.278 23 N -0.430 5.430 24 C 0.060 3.940 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.188 0.812 29 H 0.409 0.591 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.038 0.962 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 -4.644 10.587 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 N -0.246 5.246 4 C -0.117 4.117 5 C -0.226 4.226 6 C 0.379 3.621 7 O -0.465 6.465 8 N -0.347 5.347 9 C 0.011 3.989 10 C 0.025 3.975 11 H 0.091 0.909 12 C -0.167 4.167 13 C 0.024 3.976 14 N -0.356 5.356 15 C -0.339 4.339 16 H 0.100 0.900 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.792 3.208 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.203 1.203 23 N -0.111 5.111 24 C -0.080 4.080 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.205 0.795 29 H 0.245 0.755 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.632 -4.782 10.232 20.938 hybrid contribution 0.625 0.331 -1.256 1.442 sum -17.006 -4.450 8.975 19.738 Atomic orbital electron populations 1.20513 0.80834 1.06021 1.05314 1.24384 0.97673 0.80432 1.00790 1.70119 1.02359 1.29497 1.22656 1.22934 0.95785 0.91539 1.01472 1.20671 0.85934 0.94999 1.20992 1.16952 0.82729 0.86345 0.76077 1.90712 1.87315 1.15309 1.53144 1.45587 1.05074 1.11269 1.72746 1.21635 0.82784 0.93238 1.01211 1.22706 0.92841 0.93641 0.88289 0.90897 1.23556 0.95057 0.98002 1.00101 1.22176 0.87402 0.93613 0.94417 1.46424 1.03522 1.72643 1.12972 1.19259 0.90959 1.31297 0.92404 0.89998 1.25430 0.96198 1.03474 1.00917 1.69987 1.05190 1.54060 1.30995 0.85317 0.77452 0.78338 0.79709 1.21289 1.22432 1.20296 1.45305 1.04413 1.09565 1.51776 1.22497 1.02983 0.77181 1.05376 0.88259 0.87828 0.88059 0.79497 0.75505 0.89548 0.93587 0.88631 0.90265 0.95954 0.94333 0.94599 0.88612 0.86211 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.01 71.24 0.71 -0.10 16 2 C 0.23 5.36 7.88 138.20 1.09 6.44 16 3 N -0.53 -15.43 11.20 -187.39 -2.10 -17.53 16 4 C 0.04 1.12 11.37 84.10 0.96 2.07 16 5 C -0.11 -3.38 6.91 40.01 0.28 -3.10 16 6 C 0.59 20.35 7.78 86.47 0.67 21.03 16 7 O -0.58 -22.44 14.77 -4.30 -0.06 -22.50 16 8 N -0.70 -23.11 5.51 -467.01 -2.58 -25.69 16 9 C 0.14 4.61 5.54 86.38 0.48 5.09 16 10 C 0.13 4.69 4.33 45.10 0.20 4.88 16 11 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 12 C -0.13 -4.31 7.86 31.25 0.25 -4.06 16 13 C 0.15 6.77 7.51 86.48 0.65 7.42 16 14 N -0.63 -30.16 3.57 -694.08 -2.48 -32.64 16 15 C -0.21 -11.33 10.51 84.04 0.88 -10.45 16 16 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 18 N -0.95 -57.39 11.39 21.65 0.25 -57.15 16 19 Si 0.96 46.69 29.55 68.60 2.03 48.72 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 23 N -0.43 -10.86 3.17 -524.94 -1.67 -12.52 16 24 C 0.06 1.09 10.36 127.77 1.32 2.42 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.65 7.80 -2.39 -0.02 0.63 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.19 4.98 7.46 -2.91 -0.02 4.96 16 29 H 0.41 12.85 7.42 -92.71 -0.69 12.16 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 2.01 7.16 -2.38 -0.02 1.99 16 36 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.26 7.89 -2.39 -0.02 1.24 16 39 H 0.08 2.04 6.15 -2.39 -0.01 2.03 16 Total: -1.00 -74.85 329.30 1.71 -73.14 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.37 Total: 17.90 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 7.95 Total: 28.28 kcal Atomic # 7 Polarization: -136.96 SS G_CDS: -8.57 Total: -145.53 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.85 1.71 -73.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038635823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.869 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds